data_C8R
# 
_chem_comp.id                                    C8R 
_chem_comp.name                                  
;8-Amino-N1-Cyclic Inosine 5'-Diphosphoribose
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H21 N5 O14 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-10-12 
_chem_comp.pdbx_modified_date                    2012-10-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        557.300 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     C8R 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3U4H 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
C8R N1    N1    N 0 1 N N R -1.218 0.844  -0.878 -1.218 0.844  -0.878 N1    C8R 1  
C8R C2    C2    C 0 1 N N N -2.480 0.838  -1.342 -2.480 0.838  -1.342 C2    C8R 2  
C8R N3    N3    N 0 1 N N N -2.957 -0.060 -2.222 -2.957 -0.060 -2.222 N3    C8R 3  
C8R C4    C4    C 0 1 Y N N -2.163 -1.048 -2.715 -2.163 -1.048 -2.715 C4    C8R 4  
C8R C5    C5    C 0 1 Y N N -0.763 -1.146 -2.275 -0.763 -1.146 -2.275 C5    C8R 5  
C8R C6    C6    C 0 1 N N N -0.303 -0.129 -1.321 -0.303 -0.129 -1.321 C6    C8R 6  
C8R O6    O6    O 0 1 N N N 0.958  -0.191 -0.875 0.958  -0.191 -0.875 O6    C8R 7  
C8R N7    N7    N 0 1 Y N N -0.187 -2.197 -2.892 -0.187 -2.197 -2.892 N7    C8R 8  
C8R C8    C8    C 0 1 Y N N -1.174 -2.692 -3.646 -1.174 -2.692 -3.646 C8    C8R 9  
C8R N8    N8    N 0 1 N N N -0.973 -3.769 -4.436 -0.973 -3.769 -4.436 N8    C8R 10 
C8R N9    N9    N 0 1 Y N N -2.349 -2.059 -3.559 -2.349 -2.059 -3.559 N9    C8R 11 
C8R PA    PA    P 0 1 N N N -4.327 2.998  -6.217 -4.327 2.998  -6.217 PA    C8R 12 
C8R PB    PB    P 0 1 N N N -4.140 4.140  -3.533 -4.140 4.140  -3.533 PB    C8R 13 
C8R "C1'" "C1'" C 0 1 N N R -3.581 -2.336 -4.302 -3.581 -2.336 -4.302 "C1'" C8R 14 
C8R O1A   O1A   O 0 1 N N N -5.768 3.390  -6.420 -5.768 3.390  -6.420 O1A   C8R 15 
C8R O1B   O1B   O 0 1 N N N -5.565 3.630  -3.339 -5.565 3.630  -3.339 O1B   C8R 16 
C8R C1D   C1D   C 0 1 N N R -0.798 1.912  0.049  -0.798 1.912  0.049  C1D   C8R 17 
C8R "C2'" "C2'" C 0 1 N N R -4.821 -1.944 -3.525 -4.821 -1.944 -3.525 "C2'" C8R 18 
C8R "O2'" "O2'" O 0 1 N N N -5.746 -3.013 -3.707 -5.746 -3.013 -3.707 "O2'" C8R 19 
C8R O2A   O2A   O 0 1 N N N -3.412 3.106  -7.401 -3.412 3.106  -7.401 O2A   C8R 20 
C8R O2B   O2B   O 0 1 N N N -3.773 5.578  -3.230 -3.773 5.578  -3.230 O2B   C8R 21 
C8R C2D   C2D   C 0 1 N N R 0.554  2.412  -0.453 0.554  2.412  -0.453 C2D   C8R 22 
C8R O2D   O2D   O 0 1 N N N 1.431  2.713  0.639  1.431  2.713  0.639  O2D   C8R 23 
C8R "C3'" "C3'" C 0 1 N N S -5.361 -0.708 -4.219 -5.361 -0.708 -4.219 "C3'" C8R 24 
C8R "O3'" "O3'" O 0 1 N N N -6.786 -0.716 -4.260 -6.786 -0.716 -4.260 "O3'" C8R 25 
C8R O3A   O3A   O 0 1 N N N -3.634 3.915  -5.059 -3.634 3.915  -5.059 O3A   C8R 26 
C8R C3D   C3D   C 0 1 N N S 0.305  3.668  -1.280 0.305  3.668  -1.280 C3D   C8R 27 
C8R O3D   O3D   O 0 1 N N N 0.900  4.834  -0.689 0.900  4.834  -0.689 O3D   C8R 28 
C8R "C4'" "C4'" C 0 1 N N R -4.789 -0.847 -5.614 -4.789 -0.847 -5.614 "C4'" C8R 29 
C8R "O4'" "O4'" O 0 1 N N N -3.497 -1.426 -5.406 -3.497 -1.426 -5.406 "O4'" C8R 30 
C8R C4D   C4D   C 0 1 N N R -1.206 3.830  -1.298 -1.206 3.830  -1.298 C4D   C8R 31 
C8R O4D   O4D   O 0 1 N N N -1.687 3.005  -0.221 -1.687 3.005  -0.221 O4D   C8R 32 
C8R "C5'" "C5'" C 0 1 N N N -4.740 0.462  -6.392 -4.740 0.462  -6.392 "C5'" C8R 33 
C8R "O5'" "O5'" O 0 1 N N N -4.232 1.529  -5.600 -4.232 1.529  -5.600 "O5'" C8R 34 
C8R C5D   C5D   C 0 1 N N N -1.731 3.433  -2.683 -1.731 3.433  -2.683 C5D   C8R 35 
C8R O5D   O5D   O 0 1 N N N -3.143 3.167  -2.715 -3.143 3.167  -2.715 O5D   C8R 36 
C8R H1    H1    H 0 1 N N N -3.153 1.603  -0.985 -3.154 1.603  -0.985 H1    C8R 37 
C8R H2    H2    H 0 1 N N N -0.027 -4.080 -4.342 -0.027 -4.080 -4.342 H2    C8R 38 
C8R H3    H3    H 0 1 N N N -1.594 -4.504 -4.162 -1.594 -4.504 -4.162 H3    C8R 39 
C8R H4    H4    H 0 1 N N N -3.634 -3.385 -4.628 -3.634 -3.385 -4.628 H4    C8R 40 
C8R H5    H5    H 0 1 N N N -5.898 3.665  -7.320 -5.898 3.665  -7.320 H5    C8R 41 
C8R H6    H6    H 0 1 N N N -0.772 1.597  1.103  -0.772 1.597  1.103  H6    C8R 42 
C8R H7    H7    H 0 1 N N N -4.592 -1.747 -2.467 -4.592 -1.747 -2.467 H7    C8R 43 
C8R H8    H8    H 0 1 N N N -6.549 -2.820 -3.238 -6.549 -2.820 -3.238 H8    C8R 44 
C8R H9    H9    H 0 1 N N N -4.543 6.044  -2.925 -4.543 6.044  -2.925 H9    C8R 45 
C8R H10   H10   H 0 1 N N N 1.002  1.642  -1.099 1.002  1.642  -1.099 H10   C8R 46 
C8R H11   H11   H 0 1 N N N 1.582  1.927  1.150  1.582  1.927  1.150  H11   C8R 47 
C8R H12   H12   H 0 1 N N N -4.974 0.201  -3.736 -4.974 0.201  -3.736 H12   C8R 48 
C8R H13   H13   H 0 1 N N N -7.129 -0.628 -3.378 -7.129 -0.628 -3.378 H13   C8R 49 
C8R H14   H14   H 0 1 N N N 0.674  3.515  -2.305 0.674  3.515  -2.305 H14   C8R 50 
C8R H15   H15   H 0 1 N N N 1.845  4.736  -0.676 1.845  4.736  -0.676 H15   C8R 51 
C8R H16   H16   H 0 1 N N N -5.418 -1.554 -6.175 -5.418 -1.554 -6.174 H16   C8R 52 
C8R H17   H17   H 0 1 N N N -1.457 4.884  -1.110 -1.457 4.884  -1.110 H17   C8R 53 
C8R H18   H18   H 0 1 N N N -4.091 0.330  -7.270 -4.091 0.330  -7.270 H18   C8R 54 
C8R H19   H19   H 0 1 N N N -5.757 0.718  -6.723 -5.757 0.718  -6.723 H19   C8R 55 
C8R H20   H20   H 0 1 N N N -1.200 2.526  -3.008 -1.200 2.526  -3.008 H20   C8R 56 
C8R H21   H21   H 0 1 N N N -1.517 4.254  -3.383 -1.517 4.254  -3.383 H21   C8R 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
C8R O2A   PA    DOUB N N 1  
C8R O1A   PA    SING N N 2  
C8R "C5'" "C4'" SING N N 3  
C8R "C5'" "O5'" SING N N 4  
C8R PA    "O5'" SING N N 5  
C8R PA    O3A   SING N N 6  
C8R "C4'" "O4'" SING N N 7  
C8R "C4'" "C3'" SING N N 8  
C8R "O4'" "C1'" SING N N 9  
C8R O3A   PB    SING N N 10 
C8R N8    C8    SING N N 11 
C8R "C1'" N9    SING N N 12 
C8R "C1'" "C2'" SING N N 13 
C8R "O3'" "C3'" SING N N 14 
C8R "C3'" "C2'" SING N N 15 
C8R "O2'" "C2'" SING N N 16 
C8R C8    N9    SING Y N 17 
C8R C8    N7    DOUB Y N 18 
C8R N9    C4    SING Y N 19 
C8R PB    O1B   DOUB N N 20 
C8R PB    O2B   SING N N 21 
C8R PB    O5D   SING N N 22 
C8R N7    C5    SING Y N 23 
C8R O5D   C5D   SING N N 24 
C8R C4    C5    DOUB Y N 25 
C8R C4    N3    SING N N 26 
C8R C5D   C4D   SING N N 27 
C8R C5    C6    SING N N 28 
C8R N3    C2    DOUB N N 29 
C8R C2    N1    SING N N 30 
C8R C6    N1    SING N N 31 
C8R C6    O6    DOUB N N 32 
C8R C4D   C3D   SING N N 33 
C8R C4D   O4D   SING N N 34 
C8R C3D   O3D   SING N N 35 
C8R C3D   C2D   SING N N 36 
C8R N1    C1D   SING N N 37 
C8R C2D   C1D   SING N N 38 
C8R C2D   O2D   SING N N 39 
C8R O4D   C1D   SING N N 40 
C8R C2    H1    SING N N 41 
C8R N8    H2    SING N N 42 
C8R N8    H3    SING N N 43 
C8R "C1'" H4    SING N N 44 
C8R O1A   H5    SING N N 45 
C8R C1D   H6    SING N N 46 
C8R "C2'" H7    SING N N 47 
C8R "O2'" H8    SING N N 48 
C8R O2B   H9    SING N N 49 
C8R C2D   H10   SING N N 50 
C8R O2D   H11   SING N N 51 
C8R "C3'" H12   SING N N 52 
C8R "O3'" H13   SING N N 53 
C8R C3D   H14   SING N N 54 
C8R O3D   H15   SING N N 55 
C8R "C4'" H16   SING N N 56 
C8R C4D   H17   SING N N 57 
C8R "C5'" H18   SING N N 58 
C8R "C5'" H19   SING N N 59 
C8R C5D   H20   SING N N 60 
C8R C5D   H21   SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
C8R SMILES           ACDLabs              12.01 "O=C2N3C=Nc1n(c(nc12)N)C5OC(COP(=O)(O)OP(=O)(O)OCC4OC3C(O)C4O)C(O)C5O" 
C8R InChI            InChI                1.03  
"InChI=1S/C15H21N5O14P2/c16-15-18-6-11-17-3-19(12(6)25)13-9(23)7(21)4(32-13)1-30-35(26,27)34-36(28,29)31-2-5-8(22)10(24)14(33-5)20(11)15/h3-5,7-10,13-14,21-24H,1-2H2,(H2,16,18)(H,26,27)(H,28,29)/t4-,5-,7-,8-,9-,10-,13-,14-/m1/s1" 
C8R InChIKey         InChI                1.03  RNYBVHDVCKIICB-AIKIOGRUSA-N 
C8R SMILES_CANONICAL CACTVS               3.370 "Nc1nc2C(=O)[N@]3C=Nc2n1[C@@H]4O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]5O[C@@H]3[C@H](O)[C@@H]5O)[C@@H](O)[C@H]4O" 
C8R SMILES           CACTVS               3.370 "Nc1nc2C(=O)[N]3C=Nc2n1[CH]4O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]5O[CH]3[CH](O)[CH]5O)[CH](O)[CH]4O" 
C8R SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@@H]2[C@H]([C@H]([C@@H](O2)n3c4c(nc3N)C(=O)N(C=N4)[C@H]5[C@@H]([C@@H]([C@H](O5)COP(=O)(OP(=O)(O1)O)O)O)O)O)O" 
C8R SMILES           "OpenEye OEToolkits" 1.7.6 "C1C2C(C(C(O2)n3c4c(nc3N)C(=O)N(C=N4)C5C(C(C(O5)COP(=O)(OP(=O)(O1)O)O)O)O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
C8R "SYSTEMATIC NAME" ACDLabs 12.01 
"(2R,3R,4S,5R,8R,10R,13R,14S,15R,16R)-18-amino-3,4,8,10,14,15-hexahydroxy-7,9,11,25,26-pentaoxa-1,17,19,22-tetraaza-8,10-diphosphapentacyclo[18.3.1.1~2,5~.1~13,16~.0~17,21~]hexacosa-18,20,22-trien-24-one 8,10-dioxide (non-preferred name)" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
C8R "Create component"              2011-10-12 PDBJ 
C8R "Modify model coordinates code" 2011-10-13 PDBJ 
C8R "Modify atom id"                2011-10-13 PDBJ 
C8R "Initial release"               2012-10-05 RCSB 
# 
