data_BDR
#

_chem_comp.id                                   BDR
_chem_comp.name                                 beta-D-ribofuranose
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C5 H10 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "beta-D-ribose; D-ribose; ribose; BETA-D-RIBOFURANOSYL"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       150.130
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    BDR
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1AT8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  BDR  beta-D-ribose         PDB  ?  
2  BDR  D-ribose              PDB  ?  
3  BDR  ribose                PDB  ?  
4  BDR  BETA-D-RIBOFURANOSYL  PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BDR  C4   C4   C  0  1  N  N  R  -4.330  -2.538  4.714   0.289  -0.315   0.986  C4   BDR   1  
BDR  O4   O    O  0  1  N  N  N  -3.076  -1.837  4.556  -1.069  -0.337   0.516  O4   BDR   2  
BDR  C1   C1   C  0  1  N  N  R  -2.062  -2.772  4.202  -1.015  -0.388  -0.925  C1   BDR   3  
BDR  O1   O1   O  0  1  N  Y  N  -0.803  -2.340  4.571  -2.244   0.072  -1.491  O1   BDR   4  
BDR  C2   C2   C  0  1  N  N  R  -2.502  -4.036  4.948   0.147   0.573  -1.279  C2   BDR   5  
BDR  O2   O2   O  0  1  N  N  N  -1.797  -5.278  4.800   0.718   0.238  -2.545  O2   BDR   6  
BDR  C3   C3   C  0  1  N  N  S  -3.998  -4.041  4.547   1.153   0.302  -0.130  C3   BDR   7  
BDR  O3   O3   O  0  1  N  N  N  -4.147  -4.337  3.155   2.163  -0.615  -0.555  O3   BDR   8  
BDR  C5   C5   C  0  1  N  N  N  -4.986  -2.061  6.023   0.387   0.536   2.252  C5   BDR   9  
BDR  O5   O5   O  0  1  N  N  N  -6.210  -2.713  6.332  -0.422  -0.039   3.279  O5   BDR  10  
BDR  H4   H4   H  0  1  N  N  N  -4.994  -2.238  3.890   0.624  -1.331   1.195  H4   BDR  11  
BDR  H1   H1   H  0  1  N  N  N  -2.137  -2.940  3.121  -0.793  -1.400  -1.265  H1   BDR  12  
BDR  HO1  HO1  H  0  1  N  Y  N  -0.126  -2.963  4.334  -2.937  -0.525  -1.180  HO1  BDR  13  
BDR  H2   H2   H  0  1  N  N  N  -2.475  -3.770  6.024  -0.188   1.609  -1.267  H2   BDR  14  
BDR  HO2  HO2  H  0  1  N  Y  N  -1.410  -5.424  5.695   0.017   0.339  -3.203  HO2  BDR  15  
BDR  H3   H3   H  0  1  N  N  N  -4.568  -4.742  5.177   1.604   1.234   0.209  H3   BDR  16  
BDR  HO3  HO3  H  0  1  N  Y  N  -3.943  -5.259  3.052   2.629  -0.196  -1.291  HO3  BDR  17  
BDR  H51  H51  H  0  1  N  N  N  -5.135  -0.966  5.970   0.039   1.547   2.039  H51  BDR  18  
BDR  H52  H52  H  0  1  N  N  N  -4.299  -2.247  6.858   1.425   0.573   2.586  H52  BDR  19  
BDR  HO5  H5   H  0  1  N  Y  N  -6.834  -2.451  5.611  -0.331   0.526   4.057  HO5  BDR  20  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BDR  C4  O4   SING  N  N   1  
BDR  C4  C3   SING  N  N   2  
BDR  C4  C5   SING  N  N   3  
BDR  C4  H4   SING  N  N   4  
BDR  O4  C1   SING  N  N   5  
BDR  C1  O1   SING  N  N   6  
BDR  C1  C2   SING  N  N   7  
BDR  C1  H1   SING  N  N   8  
BDR  O1  HO1  SING  N  N   9  
BDR  C2  O2   SING  N  N  10  
BDR  C2  C3   SING  N  N  11  
BDR  C2  H2   SING  N  N  12  
BDR  O2  HO2  SING  N  N  13  
BDR  C3  O3   SING  N  N  14  
BDR  C3  H3   SING  N  N  15  
BDR  O3  HO3  SING  N  N  16  
BDR  C5  O5   SING  N  N  17  
BDR  C5  H51  SING  N  N  18  
BDR  C5  H52  SING  N  N  19  
BDR  O5  HO5  SING  N  N  20  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BDR  SMILES            ACDLabs               10.04  "OC1C(OC(O)C1O)CO"  
BDR  SMILES_CANONICAL  CACTVS                3.341  "OC[C@H]1O[C@@H](O)[C@H](O)[C@@H]1O"  
BDR  SMILES            CACTVS                3.341  "OC[CH]1O[CH](O)[CH](O)[CH]1O"  
BDR  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C([C@@H]1[C@H]([C@H]([C@@H](O1)O)O)O)O"  
BDR  SMILES            "OpenEye OEToolkits"  1.5.0  "C(C1C(C(C(O1)O)O)O)O"  
BDR  InChI             InChI                 1.03   "InChI=1S/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4-,5-/m1/s1"  
BDR  InChIKey          InChI                 1.03   HMFHBZSHGGEWLO-TXICZTDVSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BDR  "SYSTEMATIC NAME"                      ACDLabs               10.04  beta-D-ribofuranose  
BDR  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  1.5.0  "(2R,3R,4S,5R)-5-(hydroxymethyl)oxolane-2,3,4-triol"  
BDR  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    DRibfb  
BDR  "COMMON NAME"                          GMML                  1.0    b-D-ribofuranose  
BDR  "IUPAC CARBOHYDRATE SYMBOL"            PDB-CARE              1.0    b-D-Ribf  
BDR  "SNFG CARBOHYDRATE SYMBOL"             GMML                  1.0    Rib  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
BDR  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
BDR  "CARBOHYDRATE RING"                    furanose  PDB  ?  
BDR  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
BDR  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BDR  "Create component"          1999-07-08  EBI   
BDR  "Modify descriptor"         2011-06-04  RCSB  
BDR  "Other modification"        2019-08-12  RCSB  
BDR  "Other modification"        2019-12-19  RCSB  
BDR  "Other modification"        2020-07-03  RCSB  
BDR  "Modify name"               2020-07-17  RCSB  
BDR  "Modify synonyms"           2020-07-17  RCSB  
BDR  "Modify atom id"            2020-07-17  RCSB  
BDR  "Modify component atom id"  2020-07-17  RCSB  
##
