data_89R
# 
_chem_comp.id                                    89R 
_chem_comp.name                                  "fluorinated heme" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H33 F3 Fe N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-05-23 
_chem_comp.pdbx_modified_date                    2025-06-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        674.490 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     89R 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   Y 
_chem_comp.pdbx_model_coordinates_db_code        5XL0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
89R C1  C1  C  0 1 N N N N N N 29.648 13.096 15.157 ? ? ? C1  89R 1  
89R C2  C2  C  0 1 N N N N N N 26.300 10.041 17.016 ? ? ? C2  89R 2  
89R C15 C3  C  0 1 N N N N N N 27.590 10.602 16.584 ? ? ? C15 89R 3  
89R C14 C4  C  0 1 N N N N N N 28.887 9.978  16.705 ? ? ? C14 89R 4  
89R C7  C5  C  0 1 N N N N N N 28.984 14.252 14.801 ? ? ? C7  89R 5  
89R C12 C6  C  0 1 N N N N N N 29.063 11.980 15.737 ? ? ? C12 89R 6  
89R C10 C7  C  0 1 N N N N N N 29.378 18.640 14.686 ? ? ? C10 89R 7  
89R C3  C8  C  0 1 N N N N N N 22.827 13.011 15.490 ? ? ? C3  89R 8  
89R C13 C9  C  0 1 N N N N N N 29.823 10.835 16.165 ? ? ? C13 89R 9  
89R C11 C10 C  0 1 N N N N N N 28.495 18.731 15.930 ? ? ? C11 89R 10 
89R C6  C11 C  0 1 N N N N N N 29.654 15.428 14.292 ? ? ? C6  89R 11 
89R C8  C12 C  0 1 N N N N N N 31.137 15.573 14.082 ? ? ? C8  89R 12 
89R C5  C13 C  0 1 N N N N N N 28.669 16.348 14.049 ? ? ? C5  89R 13 
89R C9  C14 C  0 1 N N N N N N 28.848 17.755 13.533 ? ? ? C9  89R 14 
89R C4  C15 C  0 1 N N N N N N 27.412 15.724 14.403 ? ? ? C4  89R 15 
89R O2  O1  O  0 1 N N N N N N 22.301 19.699 11.749 ? ? ? O2  89R 16 
89R O3  O2  O  0 1 N N N N N N 23.753 18.909 10.305 ? ? ? O3  89R 17 
89R O1  O3  O  0 1 N N N N N N 28.927 18.315 17.036 ? ? ? O1  89R 18 
89R N   N1  N  0 1 N N R N N N 27.622 14.453 14.863 ? ? ? N   89R 19 
89R C   C16 C  0 1 N N N N N N 26.159 16.321 14.281 ? ? ? C   89R 20 
89R O   O4  O  0 1 N N N N N N 27.360 19.250 15.858 ? ? ? O   89R 21 
89R C16 C17 C  0 1 Y N N N N N 25.071 10.574 16.705 ? ? ? C16 89R 22 
89R C17 C18 C  0 1 Y N N N N N 23.829 9.872  16.934 ? ? ? C17 89R 23 
89R C18 C19 C  0 1 Y N N N N N 22.837 10.702 16.495 ? ? ? C18 89R 24 
89R C19 C20 C  0 1 Y N N N N N 23.489 11.908 16.013 ? ? ? C19 89R 25 
89R C20 C21 C  0 1 N N N N N N 23.414 14.187 15.042 ? ? ? C20 89R 26 
89R C21 C22 C  0 1 N N N N N N 22.687 15.332 14.525 ? ? ? C21 89R 27 
89R C22 C23 C  0 1 N N N N N N 23.625 16.268 14.163 ? ? ? C22 89R 28 
89R C23 C24 C  0 1 N N N N N N 24.931 15.689 14.466 ? ? ? C23 89R 29 
89R C24 C25 C  0 1 N N N N N N 21.196 15.441 14.415 ? ? ? C24 89R 30 
89R C25 C26 C  0 1 N N N N N N 23.332 17.617 13.551 ? ? ? C25 89R 31 
89R C26 C27 C  0 1 N N N N N N 23.074 17.446 12.047 ? ? ? C26 89R 32 
89R C27 C28 C  0 1 N N N N N N 23.038 18.778 11.322 ? ? ? C27 89R 33 
89R C28 C29 C  0 1 N N N N N N 23.684 8.500  17.541 ? ? ? C28 89R 34 
89R C29 C30 C  0 1 N N N N N N 23.208 7.533  16.474 ? ? ? C29 89R 35 
89R C30 C31 C  0 1 N N N N N N 31.312 10.658 15.990 ? ? ? C30 89R 36 
89R C31 C32 C  0 1 N N N N N N 32.175 11.296 17.054 ? ? ? C31 89R 37 
89R C32 C33 C  0 1 N N N N N N 21.361 10.426 16.512 ? ? ? C32 89R 38 
89R C33 C34 C  0 1 N N N N N N 29.175 8.620  17.246 ? ? ? C33 89R 39 
89R F   F1  F  0 1 N N N N N N 30.434 8.558  17.722 ? ? ? F   89R 40 
89R F1  F2  F  0 1 N N N N N N 28.281 8.227  18.177 ? ? ? F1  89R 41 
89R F2  F3  F  0 1 N N N N N N 29.119 7.766  16.216 ? ? ? F2  89R 42 
89R N1  N2  N  0 1 N N N N N N 27.722 11.835 16.006 ? ? ? N1  89R 43 
89R N2  N3  N  0 1 Y N N N N N 24.842 11.811 16.154 ? ? ? N2  89R 44 
89R N3  N4  N  0 1 N N N N N N 24.762 14.429 14.994 ? ? ? N3  89R 45 
89R FE  FE1 FE 0 0 N N N N N N 26.227 13.156 15.569 ? ? ? FE  89R 46 
89R H1  H1  H  0 1 N N N N N N 30.711 13.057 14.969 ? ? ? H1  89R 47 
89R H2  H2  H  0 1 N N N N N N 26.320 9.146  17.621 ? ? ? H2  89R 48 
89R H3  H3  H  0 1 N N N N N N 30.354 18.238 14.996 ? ? ? H3  89R 49 
89R H4  H4  H  0 1 N N N N N N 29.510 19.659 14.293 ? ? ? H4  89R 50 
89R H5  H5  H  0 1 N N N N N N 21.751 12.948 15.425 ? ? ? H5  89R 51 
89R H6  H6  H  0 1 N N N N N N 31.643 14.642 14.379 ? ? ? H6  89R 52 
89R H7  H7  H  0 1 N N N N N N 31.339 15.777 13.020 ? ? ? H7  89R 53 
89R H8  H8  H  0 1 N N N N N N 31.514 16.406 14.693 ? ? ? H8  89R 54 
89R H9  H9  H  0 1 N N N N N N 29.570 17.756 12.703 ? ? ? H9  89R 55 
89R H10 H10 H  0 1 N N N N N N 27.882 18.146 13.180 ? ? ? H10 89R 56 
89R H11 H11 H  0 1 N N N N N N 22.387 20.460 11.187 ? ? ? H11 89R 57 
89R H12 H12 H  0 1 N N N N N N 28.275 18.469 17.709 ? ? ? H12 89R 58 
89R H13 H13 H  0 1 N N N N N N 26.138 17.369 14.019 ? ? ? H13 89R 59 
89R H14 H14 H  0 1 N N N N N N 20.732 14.518 14.792 ? ? ? H14 89R 60 
89R H15 H15 H  0 1 N N N N N N 20.846 16.297 15.011 ? ? ? H15 89R 61 
89R H16 H16 H  0 1 N N N N N N 20.916 15.589 13.362 ? ? ? H16 89R 62 
89R H17 H17 H  0 1 N N N N N N 24.193 18.284 13.703 ? ? ? H17 89R 63 
89R H18 H18 H  0 1 N N N N N N 22.442 18.052 14.029 ? ? ? H18 89R 64 
89R H19 H19 H  0 1 N N N N N N 22.108 16.940 11.908 ? ? ? H19 89R 65 
89R H20 H20 H  0 1 N N N N N N 23.877 16.829 11.617 ? ? ? H20 89R 66 
89R H21 H21 H  0 1 N N N N N N 22.950 8.535  18.360 ? ? ? H21 89R 67 
89R H22 H22 H  0 1 N N N N N N 24.656 8.166  17.933 ? ? ? H22 89R 68 
89R H23 H23 H  0 1 N N N N N N 23.100 6.529  16.910 ? ? ? H23 89R 69 
89R H24 H24 H  0 1 N N N N N N 22.237 7.869  16.082 ? ? ? H24 89R 70 
89R H25 H25 H  0 1 N N N N N N 23.942 7.500  15.655 ? ? ? H25 89R 71 
89R H26 H26 H  0 1 N N N N N N 31.526 9.579  15.983 ? ? ? H26 89R 72 
89R H27 H27 H  0 1 N N N N N N 31.593 11.094 15.020 ? ? ? H27 89R 73 
89R H28 H28 H  0 1 N N N N N N 33.235 11.106 16.829 ? ? ? H28 89R 74 
89R H29 H29 H  0 1 N N N N N N 31.992 12.381 17.072 ? ? ? H29 89R 75 
89R H30 H30 H  0 1 N N N N N N 31.926 10.866 18.035 ? ? ? H30 89R 76 
89R H31 H31 H  0 1 N N N N N N 21.067 9.941  15.569 ? ? ? H31 89R 77 
89R H32 H32 H  0 1 N N N N N N 21.122 9.762  17.356 ? ? ? H32 89R 78 
89R H33 H33 H  0 1 N N N N N N 20.812 11.373 16.624 ? ? ? H33 89R 79 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
89R O3  C27 DOUB N N 1  
89R C27 O2  SING N N 2  
89R C27 C26 SING N N 3  
89R C26 C25 SING N N 4  
89R C9  C5  SING N N 5  
89R C9  C10 SING N N 6  
89R C25 C22 SING N N 7  
89R C5  C6  DOUB N N 8  
89R C5  C4  SING N N 9  
89R C8  C6  SING N N 10 
89R C22 C23 SING N N 11 
89R C22 C21 DOUB N N 12 
89R C   C4  DOUB N N 13 
89R C   C23 SING N N 14 
89R C6  C7  SING N N 15 
89R C4  N   SING N N 16 
89R C24 C21 SING N N 17 
89R C23 N3  DOUB N N 18 
89R C21 C20 SING N N 19 
89R C10 C11 SING N N 20 
89R C7  N   SING N N 21 
89R C7  C1  DOUB N N 22 
89R N   FE  SING N N 23 
89R N3  C20 SING N N 24 
89R N3  FE  SING N N 25 
89R C20 C3  DOUB N N 26 
89R C1  C12 SING N N 27 
89R C3  C19 SING N N 28 
89R FE  N1  SING N N 29 
89R FE  N2  SING N N 30 
89R C12 N1  DOUB N N 31 
89R C12 C13 SING N N 32 
89R O   C11 DOUB N N 33 
89R C11 O1  SING N N 34 
89R C30 C13 SING N N 35 
89R C30 C31 SING N N 36 
89R N1  C15 SING N N 37 
89R C19 N2  SING Y N 38 
89R C19 C18 DOUB Y N 39 
89R N2  C16 SING Y N 40 
89R C13 C14 DOUB N N 41 
89R F2  C33 SING N N 42 
89R C29 C28 SING N N 43 
89R C18 C32 SING N N 44 
89R C18 C17 SING Y N 45 
89R C15 C14 SING N N 46 
89R C15 C2  DOUB N N 47 
89R C14 C33 SING N N 48 
89R C16 C17 DOUB Y N 49 
89R C16 C2  SING N N 50 
89R C17 C28 SING N N 51 
89R C33 F   SING N N 52 
89R C33 F1  SING N N 53 
89R C1  H1  SING N N 54 
89R C2  H2  SING N N 55 
89R C10 H3  SING N N 56 
89R C10 H4  SING N N 57 
89R C3  H5  SING N N 58 
89R C8  H6  SING N N 59 
89R C8  H7  SING N N 60 
89R C8  H8  SING N N 61 
89R C9  H9  SING N N 62 
89R C9  H10 SING N N 63 
89R O2  H11 SING N N 64 
89R O1  H12 SING N N 65 
89R C   H13 SING N N 66 
89R C24 H14 SING N N 67 
89R C24 H15 SING N N 68 
89R C24 H16 SING N N 69 
89R C25 H17 SING N N 70 
89R C25 H18 SING N N 71 
89R C26 H19 SING N N 72 
89R C26 H20 SING N N 73 
89R C28 H21 SING N N 74 
89R C28 H22 SING N N 75 
89R C29 H23 SING N N 76 
89R C29 H24 SING N N 77 
89R C29 H25 SING N N 78 
89R C30 H26 SING N N 79 
89R C30 H27 SING N N 80 
89R C31 H28 SING N N 81 
89R C31 H29 SING N N 82 
89R C31 H30 SING N N 83 
89R C32 H31 SING N N 84 
89R C32 H32 SING N N 85 
89R C32 H33 SING N N 86 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
89R SMILES           ACDLabs              14.52   "FC(F)(F)C1=C(CC)C=2C=C3C(C)=C(CCC(=O)O)C4=CC=5C(CCC(=O)O)=C(C)C6=Cc7c(C)c(CC)c8C=C1N=2[Fe](n78)(N6=5)N34"                                                                                                                                                                                      
89R InChI            InChI                1.06    "InChI=1S/C34H35F3N4O4.Fe/c1-6-19-16(3)23-12-24-17(4)21(8-10-31(42)43)28(39-24)14-29-22(9-11-32(44)45)18(5)25(40-29)13-27-20(7-2)33(34(35,36)37)30(41-27)15-26(19)38-23;/h12-15H,6-11H2,1-5H3,(H4,38,39,40,41,42,43,44,45);/q;+2/p-2/b23-12-,24-12-,25-13-,26-15-,27-13-,28-14-,29-14-,30-15-;" 
89R InChIKey         InChI                1.06    CNPAYGPAEWLGQO-MZUFGXIUSA-L                                                                                                                                                                                                                                                                     
89R SMILES_CANONICAL CACTVS               3.385   "CCc1c(C)c2C=C3N=C(C=C4[N@@]5[Fe]n2c1C=C6N=C(C=C5C(=C4CCC(O)=O)C)C(=C6C(F)(F)F)CC)C(=C3C)CCC(O)=O"                                                                                                                                                                                              
89R SMILES           CACTVS               3.385   "CCc1c(C)c2C=C3N=C(C=C4[N]5[Fe]n2c1C=C6N=C(C=C5C(=C4CCC(O)=O)C)C(=C6C(F)(F)F)CC)C(=C3C)CCC(O)=O"                                                                                                                                                                                                
89R SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCc1c(c2n3c1C=C4C(=C(C5=[N]4[Fe]36[N]7=C(C=C8N6C(=C5)C(=C8CCC(=O)O)C)C(=C(C7=C2)C)CCC(=O)O)CC)C(F)(F)F)C"                                                                                                                                                                                      
89R SMILES           "OpenEye OEToolkits" 3.1.0.0 "CCc1c(c2n3c1C=C4C(=C(C5=[N]4[Fe]36[N]7=C(C=C8N6C(=C5)C(=C8CCC(=O)O)C)C(=C(C7=C2)C)CCC(=O)O)CC)C(F)(F)F)C"                                                                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
89R "SYSTEMATIC NAME" ACDLabs              14.52   "(SP-4-2)-[(21R,23S)-2,18-bis(2-carboxyethyl)-7,12-diethyl-3,13,17-trimethyl-8-(trifluoromethyl)porphine-21,23-diido-kappa~4~N~21~,N~22~,N~23~,N~24~]iron"                                                                                                                          
89R "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "3-[10,15-diethyl-20-(3-hydroxy-3-oxopropyl)-5,9,19-trimethyl-14-(trifluoromethyl)-2$l^{4},22,23$l^{4},25-tetraza-1$l^{4}-ferraoctacyclo[11.9.1.1^{1,8}.1^{3,21}.0^{2,6}.0^{16,23}.0^{18,22}.0^{11,25}]pentacosa-2,4,6,8,10,12,14,16(23),17,19,21(24)-undecaen-4-yl]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
89R "Create component"  2017-05-23 RCSB 
89R "Initial release"   2017-08-16 RCSB 
89R "Modify identifier" 2025-06-11 RCSB 
# 
