data_7YR
# 
_chem_comp.id                                    7YR 
_chem_comp.name                                  "(2R)-N-[2-[[(2S)-1-[[4-[bis(oxidanyl)amino]phenyl]amino]-5-carbamimidamido-1-oxidanylidene-pentan-2-yl]amino]-2-oxidanylidene-ethyl]-5-oxidanylidene-pyrrolidine-2-carboxamide" 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H28 N8 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-02-15 
_chem_comp.pdbx_modified_date                    2018-07-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        464.476 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     7YR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5WXT 
_chem_comp.pdbx_subcomponent_list                "7YO GLY ARG NIT" 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
7YR C5  C15 C 0 1 N N N 4.724  -32.021 -26.687 -4.799 -1.618 0.481  C5   7YO 1  
7YR O2  O5  O 0 1 N N N 4.091  -32.992 -26.415 -4.696 -2.318 1.465  O2   7YO 2  
7YR C4  C16 C 0 1 N N R 5.159  -31.774 -28.095 -6.143 -1.430 -0.173 C4   7YO 3  
7YR N1  N8  N 0 1 N N N 4.117  -31.599 -29.090 -7.216 -1.821 0.749  N1   7YO 4  
7YR C3  C17 C 0 1 N N N 5.737  -33.085 -28.551 -6.281 -2.369 -1.392 C3   7YO 5  
7YR C2  C18 C 0 1 N N N 4.715  -33.765 -29.415 -7.780 -2.745 -1.332 C2   7YO 6  
7YR C1  C19 C 0 1 N N N 3.936  -32.620 -29.890 -8.152 -2.556 0.125  C1   7YO 7  
7YR O1  O6  O 0 1 N N N 3.268  -32.688 -30.882 -9.149 -3.004 0.651  O1   7YO 8  
7YR N2  N7  N 0 1 N N N 5.050  -31.164 -25.777 -3.711 -1.003 -0.026 N    GLY 9  
7YR C6  C14 C 0 1 N N N 4.756  -31.203 -24.364 -2.405 -1.182 0.613  CA   GLY 10 
7YR C7  C13 C 0 1 N N N 3.402  -31.556 -23.812 -1.365 -0.395 -0.142 C    GLY 11 
7YR O3  O4  O 0 1 N N N 3.363  -32.137 -22.752 -1.683 0.250  -1.118 O    GLY 12 
7YR N3  N6  N 0 1 N N N 2.310  -31.240 -24.425 -0.081 -0.409 0.267  N    ARG 13 
7YR C8  C10 C 0 1 N N S 0.968  -31.526 -23.841 0.931  0.355  -0.467 CA   ARG 14 
7YR C9  C4  C 0 1 N N N 0.468  -30.410 -22.917 2.287  -0.263 -0.244 C    ARG 15 
7YR O4  O1  O 0 1 N N N -0.578 -30.366 -22.323 2.398  -1.245 0.458  O    ARG 16 
7YR C10 C1  C 0 1 N N N 0.846  -32.946 -23.291 0.940  1.801  0.034  CB   ARG 17 
7YR C11 C11 C 0 1 N N N 0.276  -33.895 -24.334 -0.395 2.467  -0.304 CG   ARG 18 
7YR C12 C2  C 0 1 N N N 0.599  -35.352 -24.090 -0.385 3.912  0.197  CD   ARG 19 
7YR N4  N3  N 0 1 N N N 0.387  -36.146 -25.269 -1.664 4.550  -0.127 NE   ARG 20 
7YR C13 C12 C 0 1 N N N 0.014  -37.406 -25.276 -1.888 5.859  0.228  CZ   ARG 21 
7YR N6  N4  N 0 1 N N N -0.341 -38.014 -24.180 -3.088 6.457  -0.076 NH1  ARG 22 
7YR N5  N5  N 0 1 N N N -0.019 -38.048 -26.329 -0.964 6.533  0.852  NH2  ARG 23 
7YR N7  N1  N 0 1 N N N 1.298  -29.429 -22.873 3.377  0.276  -0.826 N1   NIT 24 
7YR C14 C3  C 0 1 Y N N 1.335  -28.185 -22.337 4.649  -0.238 -0.543 C1   NIT 25 
7YR C19 C5  C 0 1 Y N N 2.511  -27.569 -22.657 5.743  0.614  -0.475 C2   NIT 26 
7YR C18 C6  C 0 1 Y N N 2.746  -26.289 -22.274 6.997  0.108  -0.196 C3   NIT 27 
7YR C17 C7  C 0 1 Y N N 1.775  -25.611 -21.593 7.164  -1.255 0.017  C4   NIT 28 
7YR N8  N2  N 0 1 N N N 1.990  -24.299 -21.198 8.434  -1.768 0.300  N4   NIT 29 
7YR O6  O2  O 0 1 N N N 1.538  -24.145 -19.869 8.604  -3.157 0.518  ON1  NIT 30 
7YR O5  O3  O 0 1 N N N 3.372  -23.914 -21.171 9.550  -0.899 0.369  ON2  NIT 31 
7YR C16 C8  C 0 1 Y N N 0.567  -26.216 -21.312 6.069  -2.107 -0.050 C5   NIT 32 
7YR C15 C9  C 0 1 Y N N 0.317  -27.514 -21.697 4.815  -1.599 -0.323 C6   NIT 33 
7YR H23 H23 H 0 1 N N N 5.911  -30.972 -28.144 -6.271 -0.392 -0.481 H23  7YO 34 
7YR H24 H24 H 0 1 N N N 3.577  -30.760 -29.160 -7.245 -1.580 1.688  H24  7YO 35 
7YR H25 H25 H 0 1 N N N 5.968  -33.715 -27.679 -6.048 -1.844 -2.318 H25  7YO 36 
7YR H26 H26 H 0 1 N N N 6.656  -32.907 -29.129 -5.652 -3.252 -1.277 H26  7YO 37 
7YR H27 H27 H 0 1 N N N 4.094  -34.461 -28.832 -8.366 -2.078 -1.964 H27  7YO 38 
7YR H28 H28 H 0 1 N N N 5.187  -34.305 -30.249 -7.926 -3.782 -1.634 H28  7YO 39 
7YR H22 H22 H 0 1 N N N 5.573  -30.372 -26.092 -3.793 -0.444 -0.814 H    GLY 40 
7YR H20 H20 H 0 1 N N N 5.458  -31.930 -23.930 -2.453 -0.826 1.643  HA2  GLY 41 
7YR H21 H21 H 0 1 N N N 4.986  -30.198 -23.980 -2.138 -2.238 0.606  HA3  GLY 42 
7YR H19 H19 H 0 1 N N N 2.366  -30.791 -25.317 0.174  -0.926 1.048  H    ARG 43 
7YR H12 H12 H 0 1 N N N 0.278  -31.503 -24.697 0.695  0.341  -1.531 HA   ARG 44 
7YR H1  H1  H 0 1 N N N 0.181  -32.935 -22.415 1.088  1.810  1.114  HB2  ARG 45 
7YR H2  H2  H 0 1 N N N 1.843  -33.301 -22.990 1.751  2.347  -0.448 HB3  ARG 46 
7YR H13 H13 H 0 1 N N N 0.682  -33.612 -25.316 -0.542 2.457  -1.384 HG2  ARG 47 
7YR H14 H14 H 0 1 N N N -0.818 -33.781 -24.343 -1.206 1.921  0.178  HG3  ARG 48 
7YR H3  H3  H 0 1 N N N -0.047 -35.731 -23.284 -0.238 3.922  1.277  HD2  ARG 49 
7YR H4  H4  H 0 1 N N N 1.653  -35.438 -23.787 0.426  4.458  -0.285 HD3  ARG 50 
7YR H15 H15 H 0 1 N N N 0.535  -35.705 -26.154 -2.352 4.048  -0.592 HE   ARG 51 
7YR H16 H16 H 0 1 N N N -0.333 -37.521 -23.310 -3.776 5.956  -0.541 HH11 ARG 52 
7YR H17 H17 H 0 1 N N N -0.621 -38.973 -24.209 -3.247 7.381  0.174  HH12 ARG 53 
7YR H18 H18 H 0 1 N N N -0.328 -38.988 -26.185 -1.122 7.457  1.102  HH21 ARG 54 
7YR H5  H5  H 0 1 N N N 2.142  -29.641 -23.366 3.280  1.020  -1.441 HN12 NIT 55 
7YR H6  H6  H 0 1 N N N 3.260  -28.106 -23.220 5.614  1.673  -0.641 H2   NIT 56 
7YR H7  H7  H 0 1 N N N 3.688  -25.813 -22.504 7.848  0.770  -0.145 H3   NIT 57 
7YR H8  H8  H 0 1 N N N -0.194 -25.663 -20.782 6.199  -3.166 0.116  H5   NIT 58 
7YR H9  H9  H 0 1 N N N -0.636 -27.985 -21.505 3.963  -2.261 -0.371 H6   NIT 59 
7YR H10 H10 H 0 1 N N N 1.680  -23.249 -19.587 9.516  -3.417 0.707  H10  NIT 60 
7YR H11 H11 H 0 1 N N N 3.444  -23.008 -20.893 10.384 -1.345 0.570  H11  NIT 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
7YR O1  C1  DOUB N N 1  
7YR C1  C2  SING N N 2  
7YR C1  N1  SING N N 3  
7YR C2  C3  SING N N 4  
7YR N1  C4  SING N N 5  
7YR C3  C4  SING N N 6  
7YR C4  C5  SING N N 7  
7YR C5  O2  DOUB N N 8  
7YR C5  N2  SING N N 9  
7YR N5  C13 DOUB N N 10 
7YR N2  C6  SING N N 11 
7YR C13 N4  SING N N 12 
7YR C13 N6  SING N N 13 
7YR N4  C12 SING N N 14 
7YR N3  C8  SING N N 15 
7YR N3  C7  SING N N 16 
7YR C6  C7  SING N N 17 
7YR C11 C12 SING N N 18 
7YR C11 C10 SING N N 19 
7YR C8  C10 SING N N 20 
7YR C8  C9  SING N N 21 
7YR C7  O3  DOUB N N 22 
7YR C9  N7  SING N N 23 
7YR C9  O4  DOUB N N 24 
7YR N7  C14 SING N N 25 
7YR C19 C14 DOUB Y N 26 
7YR C19 C18 SING Y N 27 
7YR C14 C15 SING Y N 28 
7YR C18 C17 DOUB Y N 29 
7YR C15 C16 DOUB Y N 30 
7YR C17 C16 SING Y N 31 
7YR C17 N8  SING N N 32 
7YR N8  O5  SING N N 33 
7YR N8  O6  SING N N 34 
7YR C10 H1  SING N N 35 
7YR C10 H2  SING N N 36 
7YR C12 H3  SING N N 37 
7YR C12 H4  SING N N 38 
7YR N7  H5  SING N N 39 
7YR C19 H6  SING N N 40 
7YR C18 H7  SING N N 41 
7YR C16 H8  SING N N 42 
7YR C15 H9  SING N N 43 
7YR O6  H10 SING N N 44 
7YR O5  H11 SING N N 45 
7YR C8  H12 SING N N 46 
7YR C11 H13 SING N N 47 
7YR C11 H14 SING N N 48 
7YR N4  H15 SING N N 49 
7YR N6  H16 SING N N 50 
7YR N6  H17 SING N N 51 
7YR N5  H18 SING N N 52 
7YR N3  H19 SING N N 53 
7YR C6  H20 SING N N 54 
7YR C6  H21 SING N N 55 
7YR N2  H22 SING N N 56 
7YR C4  H23 SING N N 57 
7YR N1  H24 SING N N 58 
7YR C3  H25 SING N N 59 
7YR C3  H26 SING N N 60 
7YR C2  H27 SING N N 61 
7YR C2  H28 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
7YR InChI            InChI                1.03  
"InChI=1S/C19H28N8O6/c20-19(21)22-9-1-2-13(18(31)24-11-3-5-12(6-4-11)27(32)33)26-16(29)10-23-17(30)14-7-8-15(28)25-14/h3-6,13-14,32-33H,1-2,7-10H2,(H,23,30)(H,24,31)(H,25,28)(H,26,29)(H4,20,21,22)/t13-,14+/m0/s1" 
7YR InChIKey         InChI                1.03  SMBOPPKPUARFHS-UONOGXRCSA-N 
7YR SMILES_CANONICAL CACTVS               3.385 "NC(=N)NCCC[C@H](NC(=O)CNC(=O)[C@H]1CCC(=O)N1)C(=O)Nc2ccc(cc2)N(O)O" 
7YR SMILES           CACTVS               3.385 "NC(=N)NCCC[CH](NC(=O)CNC(=O)[CH]1CCC(=O)N1)C(=O)Nc2ccc(cc2)N(O)O" 
7YR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "[H]/N=C(\N)/NCCC[C@@H](C(=O)Nc1ccc(cc1)N(O)O)NC(=O)CNC(=O)[C@H]2CCC(=O)N2" 
7YR SMILES           "OpenEye OEToolkits" 2.0.6 "c1cc(ccc1NC(=O)C(CCCNC(=N)N)NC(=O)CNC(=O)C2CCC(=O)N2)N(O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
7YR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R})-~{N}-[2-[[(2~{S})-1-[[4-[bis(oxidanyl)amino]phenyl]amino]-5-carbamimidamido-1-oxidanylidene-pentan-2-yl]amino]-2-oxidanylidene-ethyl]-5-oxidanylidene-pyrrolidine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
7YR "Create component" 2017-02-15 PDBJ 
7YR "Initial release"  2018-07-11 RCSB 
# 
