data_5YR
# 
_chem_comp.id                                    5YR 
_chem_comp.name                                  "10-{[3,17beta-dihydroxyestra-1,3,5(10)-trien-7beta-yl]sulfanyl}-N-methyl-N-propyldecanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C32 H51 N O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-07-27 
_chem_comp.pdbx_modified_date                    2022-07-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        529.817 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5YR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7N9O 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5YR CAA C1  C 0 1 Y N N 28.009 -33.093 -13.863 5.617   -2.760 1.437  CAA 5YR 1  
5YR CAB C2  C 0 1 Y N N 26.700 -33.468 -13.995 5.383   -4.102 1.232  CAB 5YR 2  
5YR CAC C3  C 0 1 Y N N 26.319 -34.892 -14.326 4.702   -4.515 0.096  CAC 5YR 3  
5YR CAD C4  C 0 1 Y N N 27.279 -35.832 -14.484 4.268   -3.576 -0.823 CAD 5YR 4  
5YR CAE C5  C 0 1 Y N N 28.746 -35.380 -14.314 4.509   -2.224 -0.618 CAE 5YR 5  
5YR CAF C6  C 0 1 Y N N 29.094 -34.112 -14.017 5.177   -1.816 0.518  CAF 5YR 6  
5YR CAG C7  C 0 1 N N N 29.887 -36.551 -14.519 4.028   -1.262 -1.673 CAG 5YR 7  
5YR CAH C8  C 0 1 N N R 31.330 -35.832 -14.601 4.018   0.174  -1.149 CAH 5YR 8  
5YR CAI C9  C 0 1 N N R 31.420 -34.719 -13.604 5.369   0.452  -0.489 CAI 5YR 9  
5YR CAJ C10 C 0 1 N N R 30.331 -33.704 -13.946 5.437   -0.367 0.807  CAJ 5YR 10 
5YR CAK C11 C 0 1 N N S 32.729 -34.081 -13.757 5.517   1.908  -0.100 CAK 5YR 11 
5YR CAL C12 C 0 1 N N S 33.025 -32.967 -12.851 6.951   2.065  0.479  CAL 5YR 12 
5YR CAM C13 C 0 1 N N N 32.250 -31.794 -13.183 7.004   1.335  1.804  CAM 5YR 13 
5YR CAN C14 C 0 1 N N N 30.576 -32.194 -12.972 6.763   -0.160 1.525  CAN 5YR 14 
5YR CAO C15 C 0 1 N N N 33.898 -35.117 -13.523 5.541   2.914  -1.256 CAO 5YR 15 
5YR CAP C16 C 0 1 N N N 35.195 -34.101 -13.217 6.286   4.131  -0.643 CAP 5YR 16 
5YR CAQ C17 C 0 1 N N S 34.542 -32.721 -13.041 7.152   3.575  0.515  CAQ 5YR 17 
5YR CAS C18 C 0 1 N N N 32.754 -33.311 -11.404 7.964   1.448  -0.488 CAS 5YR 18 
5YR CAV C19 C 0 1 N N N 32.263 -36.738 -17.180 1.189   0.120  -0.918 CAV 5YR 19 
5YR CAW C20 C 0 1 N N N 32.231 -36.623 -18.729 -0.042  0.257  -0.020 CAW 5YR 20 
5YR CAX C21 C 0 1 N N N 32.309 -38.009 -19.465 -1.308  0.044  -0.853 CAX 5YR 21 
5YR CAY C22 C 0 1 N N N 31.494 -37.992 -20.808 -2.539  0.181  0.045  CAY 5YR 22 
5YR CAZ C23 C 0 1 N N N 31.700 -39.238 -21.730 -3.804  -0.031 -0.788 CAZ 5YR 23 
5YR CBA C24 C 0 1 N N N 31.427 -38.816 -23.236 -5.035  0.106  0.110  CBA 5YR 24 
5YR CBB C25 C 0 1 N N N 31.728 -39.946 -24.265 -6.300  -0.107 -0.723 CBB 5YR 25 
5YR CBC C26 C 0 1 N N N 32.936 -39.559 -25.199 -7.531  0.030  0.175  CBC 5YR 26 
5YR CBD C27 C 0 1 N N N 33.355 -40.767 -26.033 -8.797  -0.183 -0.659 CBD 5YR 27 
5YR CBE C28 C 0 1 N N N 33.693 -40.362 -27.476 -10.009 -0.048 0.226  CBE 5YR 28 
5YR CBH C29 C 0 1 N N N 33.847 -42.791 -28.165 -11.406 -0.490 -1.721 CBH 5YR 29 
5YR CBI C30 C 0 1 N N N 34.249 -40.989 -29.868 -12.422 -0.066 0.565  CBI 5YR 30 
5YR CBJ C31 C 0 1 N N N 35.731 -40.999 -30.191 -12.883 1.393  0.580  CBJ 5YR 31 
5YR CBK C32 C 0 1 N N N 36.579 -40.598 -29.007 -14.114 1.530  1.479  CBK 5YR 32 
5YR NBF N1  N 0 1 N N N 33.940 -41.392 -28.505 -11.244 -0.197 -0.295 NBF 5YR 33 
5YR OAR O1  O 0 1 N N N 24.934 -35.170 -14.476 4.462   -5.837 -0.114 OAR 5YR 34 
5YR OAT O2  O 0 1 N N N 35.110 -32.065 -11.961 8.528   3.897  0.304  OAT 5YR 35 
5YR OBG O3  O 0 1 N N N 33.768 -39.171 -27.790 -9.875  0.194  1.407  OBG 5YR 36 
5YR SAU S1  S 0 1 N N N 31.558 -35.317 -16.262 2.689   0.372  0.069  SAU 5YR 37 
5YR H1  H1  H 0 1 N N N 28.259 -32.064 -13.648 6.143   -2.438 2.323  H1  5YR 38 
5YR H2  H2  H 0 1 N N N 25.923 -32.731 -13.860 5.728   -4.830 1.952  H2  5YR 39 
5YR H3  H3  H 0 1 N N N 27.030 -36.856 -14.719 3.738   -3.897 -1.707 H3  5YR 40 
5YR H4  H4  H 0 1 N N N 29.865 -37.247 -13.668 4.688   -1.321 -2.538 H4  5YR 41 
5YR H5  H5  H 0 1 N N N 29.692 -37.104 -15.450 3.018   -1.538 -1.975 H5  5YR 42 
5YR H6  H6  H 0 1 N N N 32.104 -36.585 -14.391 3.865   0.866  -1.977 H6  5YR 43 
5YR H7  H7  H 0 1 N N N 31.280 -35.100 -12.582 6.174   0.151  -1.159 H7  5YR 44 
5YR H8  H8  H 0 1 N N N 30.600 -33.361 -14.956 4.650   -0.011 1.471  H8  5YR 45 
5YR H10 H10 H 0 1 N N N 32.821 -33.720 -14.792 4.770   2.181  0.646  H10 5YR 46 
5YR H11 H11 H 0 1 N N N 32.524 -30.963 -12.517 7.983   1.473  2.263  H11 5YR 47 
5YR H12 H12 H 0 1 N N N 32.437 -31.504 -14.227 6.227   1.717  2.467  H12 5YR 48 
5YR H13 H13 H 0 1 N N N 30.353 -32.378 -11.911 6.748   -0.705 2.470  H13 5YR 49 
5YR H14 H14 H 0 1 N N N 29.934 -31.383 -13.347 7.572   -0.544 0.903  H14 5YR 50 
5YR H16 H16 H 0 1 N N N 33.689 -35.770 -12.663 6.093   2.512  -2.106 H16 5YR 51 
5YR H17 H17 H 0 1 N N N 34.073 -35.733 -14.417 4.528   3.190  -1.549 H17 5YR 52 
5YR H18 H18 H 0 1 N N N 35.724 -34.405 -12.301 6.923   4.598  -1.395 H18 5YR 53 
5YR H19 H19 H 0 1 N N N 35.899 -34.097 -14.063 5.568   4.855  -0.259 H19 5YR 54 
5YR H20 H20 H 0 1 N N N 34.687 -32.144 -13.966 6.811   3.979  1.469  H20 5YR 55 
5YR H21 H21 H 0 1 N N N 32.992 -32.444 -10.770 7.858   1.910  -1.469 H21 5YR 56 
5YR H22 H22 H 0 1 N N N 31.693 -33.574 -11.282 8.973   1.618  -0.113 H22 5YR 57 
5YR H23 H23 H 0 1 N N N 33.380 -34.165 -11.107 7.782   0.376  -0.569 H23 5YR 58 
5YR H24 H24 H 0 1 N N N 31.697 -37.638 -16.896 1.208   -0.876 -1.360 H24 5YR 59 
5YR H25 H25 H 0 1 N N N 33.313 -36.852 -16.871 1.146   0.868  -1.711 H25 5YR 60 
5YR H26 H26 H 0 1 N N N 31.294 -36.126 -19.021 0.001   -0.490 0.772  H26 5YR 61 
5YR H27 H27 H 0 1 N N N 33.086 -36.010 -19.050 -0.061  1.254  0.421  H27 5YR 62 
5YR H28 H28 H 0 1 N N N 33.362 -38.237 -19.688 -1.351  0.792  -1.646 H28 5YR 63 
5YR H29 H29 H 0 1 N N N 31.897 -38.788 -18.806 -1.289  -0.952 -1.295 H29 5YR 64 
5YR H30 H30 H 0 1 N N N 30.425 -37.929 -20.556 -2.495  -0.566 0.837  H30 5YR 65 
5YR H31 H31 H 0 1 N N N 31.791 -37.097 -21.375 -2.557  1.178  0.486  H31 5YR 66 
5YR H32 H32 H 0 1 N N N 32.733 -39.604 -21.631 -3.847  0.716  -1.581 H32 5YR 67 
5YR H33 H33 H 0 1 N N N 30.999 -40.034 -21.437 -3.785  -1.028 -1.230 H33 5YR 68 
5YR H34 H34 H 0 1 N N N 30.369 -38.532 -23.331 -4.992  -0.642 0.902  H34 5YR 69 
5YR H35 H35 H 0 1 N N N 32.062 -37.950 -23.475 -5.054  1.102  0.551  H35 5YR 70 
5YR H36 H36 H 0 1 N N N 31.976 -40.869 -23.721 -6.344  0.640  -1.516 H36 5YR 71 
5YR H37 H37 H 0 1 N N N 30.835 -40.114 -24.885 -6.282  -1.104 -1.165 H37 5YR 72 
5YR H38 H38 H 0 1 N N N 32.632 -38.741 -25.869 -7.488  -0.718 0.967  H38 5YR 73 
5YR H39 H39 H 0 1 N N N 33.784 -39.230 -24.581 -7.550  1.026  0.616  H39 5YR 74 
5YR H40 H40 H 0 1 N N N 34.242 -41.229 -25.574 -8.840  0.564  -1.451 H40 5YR 75 
5YR H41 H41 H 0 1 N N N 32.530 -41.494 -26.049 -8.778  -1.179 -1.100 H41 5YR 76 
5YR H42 H42 H 0 1 N N N 34.063 -43.400 -29.055 -11.411 -1.569 -1.872 H42 5YR 77 
5YR H43 H43 H 0 1 N N N 34.576 -43.025 -27.375 -12.349 -0.069 -2.073 H43 5YR 78 
5YR H44 H44 H 0 1 N N N 32.832 -43.014 -27.805 -10.581 -0.048 -2.279 H44 5YR 79 
5YR H45 H45 H 0 1 N N N 33.868 -39.969 -30.022 -12.169 -0.377 1.579  H45 5YR 80 
5YR H46 H46 H 0 1 N N N 33.740 -41.679 -30.557 -13.224 -0.696 0.181  H46 5YR 81 
5YR H47 H47 H 0 1 N N N 36.018 -42.014 -30.504 -12.081 2.024  0.965  H47 5YR 82 
5YR H48 H48 H 0 1 N N N 35.918 -40.295 -31.015 -13.136 1.705  -0.433 H48 5YR 83 
5YR H49 H49 H 0 1 N N N 37.641 -40.621 -29.292 -14.916 0.900  1.094  H49 5YR 84 
5YR H50 H50 H 0 1 N N N 36.307 -39.581 -28.689 -13.861 1.219  2.492  H50 5YR 85 
5YR H51 H51 H 0 1 N N N 36.406 -41.300 -28.178 -14.442 2.570  1.489  H51 5YR 86 
5YR H52 H52 H 0 1 N N N 24.816 -36.090 -14.682 3.626   -6.148 0.260  H52 5YR 87 
5YR H53 H53 H 0 1 N N N 36.038 -31.936 -12.121 8.717   4.845  0.317  H53 5YR 88 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5YR CAA CAB DOUB Y N 1  
5YR CAA CAF SING Y N 2  
5YR CAB CAC SING Y N 3  
5YR CAC CAD DOUB Y N 4  
5YR CAC OAR SING N N 5  
5YR CAD CAE SING Y N 6  
5YR CAE CAF DOUB Y N 7  
5YR CAE CAG SING N N 8  
5YR CAF CAJ SING N N 9  
5YR CAG CAH SING N N 10 
5YR CAH CAI SING N N 11 
5YR CAH SAU SING N N 12 
5YR CAI CAJ SING N N 13 
5YR CAI CAK SING N N 14 
5YR CAK CAL SING N N 15 
5YR CAK CAO SING N N 16 
5YR CAL CAM SING N N 17 
5YR CAL CAQ SING N N 18 
5YR CAL CAS SING N N 19 
5YR CAO CAP SING N N 20 
5YR CAP CAQ SING N N 21 
5YR CAQ OAT SING N N 22 
5YR CAV CAW SING N N 23 
5YR CAV SAU SING N N 24 
5YR CAW CAX SING N N 25 
5YR CAX CAY SING N N 26 
5YR CAY CAZ SING N N 27 
5YR CAZ CBA SING N N 28 
5YR CBA CBB SING N N 29 
5YR CBB CBC SING N N 30 
5YR CBC CBD SING N N 31 
5YR CBD CBE SING N N 32 
5YR CBE NBF SING N N 33 
5YR CBE OBG DOUB N N 34 
5YR CBH NBF SING N N 35 
5YR CBI CBJ SING N N 36 
5YR CBI NBF SING N N 37 
5YR CBJ CBK SING N N 38 
5YR CAM CAN SING N N 39 
5YR CAA H1  SING N N 40 
5YR CAB H2  SING N N 41 
5YR CAD H3  SING N N 42 
5YR CAG H4  SING N N 43 
5YR CAG H5  SING N N 44 
5YR CAH H6  SING N N 45 
5YR CAI H7  SING N N 46 
5YR CAJ H8  SING N N 47 
5YR CAK H10 SING N N 48 
5YR CAM H11 SING N N 49 
5YR CAM H12 SING N N 50 
5YR CAN H13 SING N N 51 
5YR CAN H14 SING N N 52 
5YR CAO H16 SING N N 53 
5YR CAO H17 SING N N 54 
5YR CAP H18 SING N N 55 
5YR CAP H19 SING N N 56 
5YR CAQ H20 SING N N 57 
5YR CAS H21 SING N N 58 
5YR CAS H22 SING N N 59 
5YR CAS H23 SING N N 60 
5YR CAV H24 SING N N 61 
5YR CAV H25 SING N N 62 
5YR CAW H26 SING N N 63 
5YR CAW H27 SING N N 64 
5YR CAX H28 SING N N 65 
5YR CAX H29 SING N N 66 
5YR CAY H30 SING N N 67 
5YR CAY H31 SING N N 68 
5YR CAZ H32 SING N N 69 
5YR CAZ H33 SING N N 70 
5YR CBA H34 SING N N 71 
5YR CBA H35 SING N N 72 
5YR CBB H36 SING N N 73 
5YR CBB H37 SING N N 74 
5YR CBC H38 SING N N 75 
5YR CBC H39 SING N N 76 
5YR CBD H40 SING N N 77 
5YR CBD H41 SING N N 78 
5YR CBH H42 SING N N 79 
5YR CBH H43 SING N N 80 
5YR CBH H44 SING N N 81 
5YR CBI H45 SING N N 82 
5YR CBI H46 SING N N 83 
5YR CBJ H47 SING N N 84 
5YR CBJ H48 SING N N 85 
5YR CBK H49 SING N N 86 
5YR CBK H50 SING N N 87 
5YR CBK H51 SING N N 88 
5YR OAR H52 SING N N 89 
5YR OAT H53 SING N N 90 
5YR CAJ CAN SING N N 91 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5YR SMILES           ACDLabs              12.01 "CCCN(C)C(=O)CCCCCCCCCSC1Cc2cc(O)ccc2C2CCC3(C)C(O)CCC3C21"                                                                                                                                                              
5YR InChI            InChI                1.03  "InChI=1S/C32H51NO3S/c1-4-19-33(3)30(36)12-10-8-6-5-7-9-11-20-37-28-22-23-21-24(34)13-14-25(23)26-17-18-32(2)27(31(26)28)15-16-29(32)35/h13-14,21,26-29,31,34-35H,4-12,15-20,22H2,1-3H3/t26-,27-,28+,29-,31+,32-/m0/s1" 
5YR InChIKey         InChI                1.03  DLPPNYFZXMCJHH-YDJIAOAGSA-N                                                                                                                                                                                             
5YR SMILES_CANONICAL CACTVS               3.385 "CCCN(C)C(=O)CCCCCCCCCS[C@@H]1Cc2cc(O)ccc2[C@@H]3CC[C@]4(C)[C@@H](O)CC[C@H]4[C@H]13"                                                                                                                                    
5YR SMILES           CACTVS               3.385 "CCCN(C)C(=O)CCCCCCCCCS[CH]1Cc2cc(O)ccc2[CH]3CC[C]4(C)[CH](O)CC[CH]4[CH]13"                                                                                                                                             
5YR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCN(C)C(=O)CCCCCCCCCS[C@@H]1Cc2cc(ccc2[C@H]3[C@@H]1[C@@H]4CC[C@@H]([C@]4(CC3)C)O)O"                                                                                                                                   
5YR SMILES           "OpenEye OEToolkits" 2.0.7 "CCCN(C)C(=O)CCCCCCCCCSC1Cc2cc(ccc2C3C1C4CCC(C4(CC3)C)O)O"                                                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5YR "SYSTEMATIC NAME" ACDLabs              12.01 "10-{[3,17beta-dihydroxyestra-1,3,5(10)-trien-7beta-yl]sulfanyl}-N-methyl-N-propyldecanamide"                                                                                              
5YR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-methyl-10-[[(7~{R},8~{R},9~{R},13~{S},14~{S},17~{S})-13-methyl-3,17-bis(oxidanyl)-6,7,8,9,11,12,14,15,16,17-decahydrocyclopenta[a]phenanthren-7-yl]sulfanyl]-~{N}-propyl-decanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5YR "Create component" 2021-07-27 RCSB 
5YR "Initial release"  2022-07-06 RCSB 
# 
