data_4JR
# 
_chem_comp.id                                    4JR 
_chem_comp.name                                  "2-(biphenyl-4-yl)-8-[(1-methyl-1H-imidazol-2-yl)methyl]-2,8-diazaspiro[4.5]decan-1-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H28 N4 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-04-11 
_chem_comp.pdbx_modified_date                    2013-10-25 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        400.516 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     4JR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4JZR 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
4JR N1  N1  N 0 1 Y N N 40.709 18.884 -4.567  -6.857 -0.386 1.008  N1  4JR 1  
4JR N3  N3  N 0 1 N N N 42.383 21.992 -4.508  -4.214 0.394  -0.802 N3  4JR 2  
4JR C4  C4  C 0 1 Y N N 41.116 20.052 -4.026  -6.511 -0.205 -0.285 C4  4JR 3  
4JR C5  C5  C 0 1 N N N 42.485 20.638 -4.051  -5.601 0.877  -0.807 C5  4JR 4  
4JR C6  C6  C 0 1 N N N 43.530 22.777 -3.937  -3.331 1.322  -1.520 C6  4JR 5  
4JR C7  C7  C 0 1 N N N 44.915 22.516 -4.506  -1.931 0.711  -1.631 C7  4JR 6  
4JR C8  C8  C 0 1 N N N 44.953 22.597 -6.032  -1.395 0.419  -0.233 C8  4JR 7  
4JR C10 C10 C 0 1 N N N 46.382 22.760 -7.915  0.304  2.027  0.271  C10 4JR 8  
4JR C13 C13 C 0 1 Y N N 45.424 25.703 -9.441  3.181  1.512  0.222  C13 4JR 9  
4JR C15 C15 C 0 1 Y N N 46.968 27.554 -9.825  5.011  -0.035 0.083  C15 4JR 10 
4JR C17 C17 C 0 1 Y N N 47.326 25.937 -8.025  2.757  -0.831 -0.140 C17 4JR 11 
4JR C20 C20 C 0 1 Y N N 47.122 30.316 -12.354 8.304  -1.845 -0.040 C20 4JR 12 
4JR C21 C21 C 0 1 Y N N 48.318 30.942 -12.021 9.193  -0.803 0.157  C21 4JR 13 
4JR C22 C22 C 0 1 Y N N 49.064 30.450 -10.962 8.726  0.488  0.331  C22 4JR 14 
4JR C24 C24 C 0 1 N N N 43.770 21.773 -6.571  -2.356 -0.489 0.528  C24 4JR 15 
4JR C1  C1  C 0 1 N N N 41.445 17.852 -5.313  -6.424 0.428  2.146  C1  4JR 16 
4JR C2  C2  C 0 1 Y N N 39.406 18.796 -4.311  -7.692 -1.469 1.056  C2  4JR 17 
4JR C3  C3  C 0 1 Y N N 38.997 19.857 -3.632  -7.828 -1.912 -0.208 C3  4JR 18 
4JR N2  N2  N 0 1 Y N N 40.083 20.666 -3.458  -7.096 -1.121 -1.006 N2  4JR 19 
4JR C25 C25 C 0 1 N N N 42.435 22.141 -5.922  -3.743 0.161  0.569  C25 4JR 20 
4JR C11 C11 C 0 1 N N N 44.994 24.023 -6.544  -0.023 -0.200 -0.307 C11 4JR 21 
4JR O   O   O 0 1 N N N 44.411 24.984 -6.052  0.205  -1.357 -0.591 O   4JR 22 
4JR C9  C9  C 0 1 N N N 46.261 22.021 -6.584  -1.190 1.737  0.540  C9  4JR 23 
4JR N4  N4  N 0 1 N N N 45.805 24.081 -7.611  0.913  0.721  -0.010 N4  4JR 24 
4JR C12 C12 C 0 1 Y N N 46.170 25.248 -8.361  2.287  0.467  0.024  C12 4JR 25 
4JR C14 C14 C 0 1 Y N N 45.808 26.835 -10.164 4.537  1.265  0.252  C14 4JR 26 
4JR C16 C16 C 0 1 Y N N 47.718 27.070 -8.740  4.113  -1.082 -0.116 C16 4JR 27 
4JR C18 C18 C 0 1 Y N N 47.395 28.693 -10.556 6.470  -0.303 0.108  C18 4JR 28 
4JR C23 C23 C 0 1 Y N N 48.602 29.345 -10.258 7.370  0.743  0.307  C23 4JR 29 
4JR C19 C19 C 0 1 Y N N 46.667 29.208 -11.637 6.946  -1.601 -0.065 C19 4JR 30 
4JR H2  H2  H 0 1 N N N 43.125 20.061 -4.735  -5.681 1.758  -0.170 H2  4JR 31 
4JR H3  H3  H 0 1 N N N 42.917 20.618 -3.040  -5.892 1.136  -1.825 H3  4JR 32 
4JR H4  H4  H 0 1 N N N 43.307 23.843 -4.090  -3.729 1.503  -2.519 H4  4JR 33 
4JR H5  H5  H 0 1 N N N 43.571 22.562 -2.859  -3.274 2.264  -0.975 H5  4JR 34 
4JR H6  H6  H 0 1 N N N 45.237 21.510 -4.199  -1.983 -0.216 -2.202 H6  4JR 35 
4JR H7  H7  H 0 1 N N N 45.610 23.264 -4.097  -1.267 1.413  -2.136 H7  4JR 36 
4JR H8  H8  H 0 1 N N N 45.810 22.250 -8.704  0.411  2.687  -0.590 H8  4JR 37 
4JR H9  H9  H 0 1 N N N 47.434 22.849 -8.224  0.765  2.476  1.151  H9  4JR 38 
4JR H10 H10 H 0 1 N N N 44.529 25.171 -9.727  2.814  2.520  0.349  H10 4JR 39 
4JR H11 H11 H 0 1 N N N 47.931 25.592 -7.199  2.061  -1.642 -0.293 H11 4JR 40 
4JR H12 H12 H 0 1 N N N 46.536 30.693 -13.180 8.674  -2.850 -0.179 H12 4JR 41 
4JR H13 H13 H 0 1 N N N 48.661 31.800 -12.580 10.255 -0.998 0.177  H13 4JR 42 
4JR H14 H14 H 0 1 N N N 49.996 30.921 -10.686 9.424  1.297  0.485  H14 4JR 43 
4JR H15 H15 H 0 1 N N N 43.691 21.943 -7.655  -2.421 -1.454 0.024  H15 4JR 44 
4JR H16 H16 H 0 1 N N N 43.970 20.708 -6.380  -1.992 -0.634 1.545  H16 4JR 45 
4JR H17 H17 H 0 1 N N N 42.502 18.144 -5.398  -5.506 0.012  2.563  H17 4JR 46 
4JR H18 H18 H 0 1 N N N 41.372 16.892 -4.780  -6.241 1.450  1.813  H18 4JR 47 
4JR H19 H19 H 0 1 N N N 41.012 17.747 -6.319  -7.201 0.429  2.910  H19 4JR 48 
4JR H20 H20 H 0 1 N N N 38.772 17.976 -4.614  -8.153 -1.888 1.938  H20 4JR 49 
4JR H21 H21 H 0 1 N N N 37.993 20.047 -3.282  -8.423 -2.757 -0.524 H21 4JR 50 
4JR H22 H22 H 0 1 N N N 42.220 23.193 -6.161  -3.683 1.111  1.099  H22 4JR 51 
4JR H23 H23 H 0 1 N N N 41.656 21.499 -6.360  -4.439 -0.501 1.085  H23 4JR 52 
4JR H24 H24 H 0 1 N N N 46.190 20.934 -6.733  -1.821 2.529  0.136  H24 4JR 53 
4JR H25 H25 H 0 1 N N N 47.110 22.245 -5.921  -1.375 1.597  1.605  H25 4JR 54 
4JR H26 H26 H 0 1 N N N 45.204 27.163 -10.997 5.232  2.078  0.406  H26 4JR 55 
4JR H27 H27 H 0 1 N N N 48.621 27.588 -8.452  4.478  -2.090 -0.247 H27 4JR 56 
4JR H28 H28 H 0 1 N N N 49.201 28.969 -9.441  7.006  1.751  0.443  H28 4JR 57 
4JR H29 H29 H 0 1 N N N 45.736 28.739 -11.921 6.253  -2.415 -0.220 H29 4JR 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4JR C20 C21 DOUB Y N 1  
4JR C20 C19 SING Y N 2  
4JR C21 C22 SING Y N 3  
4JR C19 C18 DOUB Y N 4  
4JR C22 C23 DOUB Y N 5  
4JR C18 C23 SING Y N 6  
4JR C18 C15 SING N N 7  
4JR C14 C15 DOUB Y N 8  
4JR C14 C13 SING Y N 9  
4JR C15 C16 SING Y N 10 
4JR C13 C12 DOUB Y N 11 
4JR C16 C17 DOUB Y N 12 
4JR C12 C17 SING Y N 13 
4JR C12 N4  SING N N 14 
4JR C10 N4  SING N N 15 
4JR C10 C9  SING N N 16 
4JR N4  C11 SING N N 17 
4JR C9  C8  SING N N 18 
4JR C24 C8  SING N N 19 
4JR C24 C25 SING N N 20 
4JR C11 O   DOUB N N 21 
4JR C11 C8  SING N N 22 
4JR C8  C7  SING N N 23 
4JR C25 N3  SING N N 24 
4JR C1  N1  SING N N 25 
4JR N1  C2  SING Y N 26 
4JR N1  C4  SING Y N 27 
4JR N3  C5  SING N N 28 
4JR N3  C6  SING N N 29 
4JR C7  C6  SING N N 30 
4JR C2  C3  DOUB Y N 31 
4JR C5  C4  SING N N 32 
4JR C4  N2  DOUB Y N 33 
4JR C3  N2  SING Y N 34 
4JR C5  H2  SING N N 35 
4JR C5  H3  SING N N 36 
4JR C6  H4  SING N N 37 
4JR C6  H5  SING N N 38 
4JR C7  H6  SING N N 39 
4JR C7  H7  SING N N 40 
4JR C10 H8  SING N N 41 
4JR C10 H9  SING N N 42 
4JR C13 H10 SING N N 43 
4JR C17 H11 SING N N 44 
4JR C20 H12 SING N N 45 
4JR C21 H13 SING N N 46 
4JR C22 H14 SING N N 47 
4JR C24 H15 SING N N 48 
4JR C24 H16 SING N N 49 
4JR C1  H17 SING N N 50 
4JR C1  H18 SING N N 51 
4JR C1  H19 SING N N 52 
4JR C2  H20 SING N N 53 
4JR C3  H21 SING N N 54 
4JR C25 H22 SING N N 55 
4JR C25 H23 SING N N 56 
4JR C9  H24 SING N N 57 
4JR C9  H25 SING N N 58 
4JR C14 H26 SING N N 59 
4JR C16 H27 SING N N 60 
4JR C23 H28 SING N N 61 
4JR C19 H29 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
4JR SMILES           ACDLabs              12.01 "O=C3N(c2ccc(c1ccccc1)cc2)CCC34CCN(CC4)Cc5nccn5C"                                                                                                       
4JR InChI            InChI                1.03  "InChI=1S/C25H28N4O/c1-27-18-14-26-23(27)19-28-15-11-25(12-16-28)13-17-29(24(25)30)22-9-7-21(8-10-22)20-5-3-2-4-6-20/h2-10,14,18H,11-13,15-17,19H2,1H3" 
4JR InChIKey         InChI                1.03  QFZKAEGCEQQJEP-UHFFFAOYSA-N                                                                                                                             
4JR SMILES_CANONICAL CACTVS               3.370 "Cn1ccnc1CN2CCC3(CC2)CCN(c4ccc(cc4)c5ccccc5)C3=O"                                                                                                       
4JR SMILES           CACTVS               3.370 "Cn1ccnc1CN2CCC3(CC2)CCN(c4ccc(cc4)c5ccccc5)C3=O"                                                                                                       
4JR SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cn1ccnc1CN2CCC3(CC2)CCN(C3=O)c4ccc(cc4)c5ccccc5"                                                                                                       
4JR SMILES           "OpenEye OEToolkits" 1.7.6 "Cn1ccnc1CN2CCC3(CC2)CCN(C3=O)c4ccc(cc4)c5ccccc5"                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
4JR "SYSTEMATIC NAME" ACDLabs              12.01 "2-(biphenyl-4-yl)-8-[(1-methyl-1H-imidazol-2-yl)methyl]-2,8-diazaspiro[4.5]decan-1-one" 
4JR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "8-[(1-methylimidazol-2-yl)methyl]-2-(4-phenylphenyl)-2,8-diazaspiro[4.5]decan-1-one"    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
4JR "Create component" 2013-04-11 PDBJ 
4JR "Initial release"  2013-10-30 RCSB 
# 
