data_2QR
#

_chem_comp.id                                   2QR
_chem_comp.name                                 
;(2R,3R,4S,5S)-3,4-dihydroxy-5-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]tetrahydro-2H-pyr
an-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen
diphosphate
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H33 N4 O20 P3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        PLP-UDP-Ara4N
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2014-01-09
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       766.434
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    2QR
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4OCA
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2QR  O01   O01   O  0  1  N  N  N  -16.027   -2.325  16.510  -10.431  -1.511  -1.841  O01   2QR   1  
2QR  C02   C02   C  0  1  N  N  R  -16.255   -2.949  15.285   -9.393  -0.743  -1.229  C02   2QR   2  
2QR  C03   C03   C  0  1  N  N  S  -17.552   -3.556  15.281   -8.447  -0.141  -2.297  C03   2QR   3  
2QR  O04   O04   O  0  1  N  N  N  -18.432   -2.805  16.088   -8.556  -0.864  -3.525  O04   2QR   4  
2QR  C05   C05   C  0  1  N  N  R  -17.305   -4.871  15.869   -7.039  -0.312  -1.694  C05   2QR   5  
2QR  C06   C06   C  0  1  N  N  N  -18.237   -5.927  15.371   -6.359   1.052  -1.567  C06   2QR   6  
2QR  O07   O07   O  0  1  N  N  N  -18.134   -7.160  16.078   -5.014   0.874  -1.117  O07   2QR   7  
2QR  P08   P08   P  0  1  N  N  N  -19.370   -8.162  16.173   -4.001   2.102  -0.873  P08   2QR   8  
2QR  O09   O09   O  0  1  N  N  N  -20.404   -7.575  17.112   -4.546   3.014   0.337  O09   2QR   9  
2QR  O10   O10   O  0  1  N  N  N  -19.989   -8.285  14.695   -2.544   1.529  -0.498  O10   2QR  10  
2QR  P11   P11   P  0  1  N  N  N  -19.528   -9.285  13.630   -1.070   2.173  -0.440  P11   2QR  11  
2QR  O12   O12   O  0  1  N  N  N  -20.700   -9.559  12.703   -0.886   3.088  -1.590  O12   2QR  12  
2QR  O13   O13   O  0  1  N  N  N  -19.001  -10.600  14.231    0.032   1.000  -0.506  O13   2QR  13  
2QR  C14   C14   C  0  1  N  N  R  -19.711  -11.726  14.207    1.436   1.255  -0.580  C14   2QR  14  
2QR  C15   C15   C  0  1  N  N  R  -19.525  -12.458  15.503    2.121   0.120  -1.345  C15   2QR  15  
2QR  O16   O16   O  0  1  N  N  N  -20.040  -11.703  16.565    1.851  -1.125  -0.697  O16   2QR  16  
2QR  O17   O17   O  0  1  N  N  N  -19.252  -12.561  13.097    1.976   1.330   0.741  O17   2QR  17  
2QR  C18   C18   C  0  1  N  N  N  -17.880  -13.035  13.258    3.377   1.609   0.784  C18   2QR  18  
2QR  C19   C19   C  0  1  N  N  S  -17.533  -13.503  14.651    4.140   0.488   0.072  C19   2QR  19  
2QR  C20   C20   C  0  1  N  N  S  -18.106  -12.704  15.735    3.632   0.369  -1.368  C20   2QR  20  
2QR  O21   O21   O  0  1  N  N  N  -17.952  -13.401  16.963    3.906   1.581  -2.073  O21   2QR  21  
2QR  N22   N22   N  0  1  N  N  N  -18.016  -14.863  14.789    5.575   0.801   0.062  N22   2QR  22  
2QR  C23   C23   C  0  1  N  N  N  -17.218  -15.777  14.312    6.219   0.362   1.308  C23   2QR  23  
2QR  C24   C24   C  0  1  Y  N  N  -17.434  -17.268  14.538    7.687   0.699   1.261  C24   2QR  24  
2QR  C25   C25   C  0  1  Y  N  N  -17.450  -17.734  15.834    8.152   1.922   1.732  C25   2QR  25  
2QR  O26   O26   O  0  1  N  N  N  -17.307  -16.851  16.857    7.288   2.838   2.244  O26   2QR  26  
2QR  C27   C27   C  0  1  Y  N  N  -17.626  -19.085  16.054    9.511   2.194   1.671  C27   2QR  27  
2QR  C28   C28   C  0  1  N  N  N  -17.654  -19.569  17.449   10.031   3.515   2.178  C28   2QR  28  
2QR  N29   N29   N  0  1  Y  N  N  -17.765  -19.935  14.993   10.353   1.309   1.176  N29   2QR  29  
2QR  C30   C30   C  0  1  Y  N  N  -17.739  -19.502  13.697    9.944   0.141   0.722  C30   2QR  30  
2QR  C31   C31   C  0  1  Y  N  N  -17.573  -18.158  13.460    8.607  -0.204   0.753  C31   2QR  31  
2QR  C32   C32   C  0  1  N  N  N  -17.536  -17.603  12.034    8.152  -1.543   0.231  C32   2QR  32  
2QR  O33   O33   O  0  1  N  N  N  -16.264  -17.492  11.477    9.282  -2.278  -0.243  O33   2QR  33  
2QR  P34   P34   P  0  1  N  N  N  -16.127  -16.582  10.221    9.166  -3.756  -0.872  P34   2QR  34  
2QR  O35   O35   O  0  1  N  N  N  -16.687  -15.247  10.565   10.608  -4.222  -1.416  O35   2QR  35  
2QR  O36   O36   O  0  1  N  N  N  -14.648  -16.465   9.848    8.663  -4.783   0.262  O36   2QR  36  
2QR  O37   O37   O  0  1  N  N  N  -16.930  -17.232   9.058    8.197  -3.741  -1.990  O37   2QR  37  
2QR  O38   O38   O  0  1  N  N  N  -18.430   -8.656  12.836   -0.897   2.995   0.933  O38   2QR  38  
2QR  O39   O39   O  0  1  N  N  N  -18.914   -9.542  16.761   -3.909   2.918  -2.104  O39   2QR  39  
2QR  O40   O40   O  0  1  N  N  N  -15.958   -5.221  15.545   -7.200  -0.904  -0.394  O40   2QR  40  
2QR  C41   C41   C  0  1  N  N  R  -15.281   -4.068  15.107   -8.434  -1.654  -0.421  C41   2QR  41  
2QR  N42   N42   N  0  1  N  N  N  -14.875   -4.138  13.757   -8.942  -1.863   0.937  N42   2QR  42  
2QR  C43   C43   C  0  1  N  N  N  -15.656   -4.972  12.842   -9.321  -3.116   1.334  C43   2QR  43  
2QR  C44   C44   C  0  1  N  N  N  -15.252   -5.066  11.411   -9.790  -3.308   2.586  C44   2QR  44  
2QR  C45   C45   C  0  1  N  N  N  -13.694   -3.381  13.310   -9.026  -0.821   1.784  C45   2QR  45  
2QR  N46   N46   N  0  1  N  N  N  -13.331   -3.504  11.889   -9.489  -0.984   3.037  N46   2QR  46  
2QR  C47   C47   C  0  1  N  N  N  -14.061   -4.313  10.926   -9.878  -2.202   3.465  C47   2QR  47  
2QR  O48   O48   O  0  1  N  N  N  -13.706   -4.378   9.729  -10.298  -2.351   4.598  O48   2QR  48  
2QR  O49   O49   O  0  1  N  N  N  -13.012   -2.664  14.070   -8.678   0.283   1.413  O49   2QR  49  
2QR  H011  H011  H  0  0  N  N  N  -16.646   -1.613  16.624  -11.030  -0.992  -2.394  H011  2QR  50  
2QR  H021  H021  H  0  0  N  N  N  -16.158   -2.237  14.452   -9.812   0.039  -0.596  H021  2QR  51  
2QR  H031  H031  H  0  0  N  N  N  -17.937   -3.657  14.256   -8.670   0.914  -2.453  H031  2QR  52  
2QR  H041  H041  H  0  0  N  N  N  -19.291   -3.211  16.083   -9.439  -0.839  -3.919  H041  2QR  53  
2QR  H051  H051  H  0  0  N  N  N  -17.411   -4.799  16.962   -6.441  -0.967  -2.328  H051  2QR  54  
2QR  H061  H061  H  0  0  N  N  N  -19.268   -5.555  15.469   -6.354   1.548  -2.538  H061  2QR  55  
2QR  H062  H062  H  0  0  N  N  N  -18.014   -6.115  14.310   -6.904   1.665  -0.849  H062  2QR  56  
2QR  H1    H1    H  0  1  N  N  N  -20.544   -8.168  17.841   -4.632   2.544   1.177  H1    2QR  57  
2QR  H141  H141  H  0  0  N  N  N  -20.782  -11.513  14.076    1.608   2.198  -1.097  H141  2QR  58  
2QR  H151  H151  H  0  0  N  N  N  -20.051  -13.422  15.439    1.742   0.089  -2.367  H151  2QR  59  
2QR  H161  H161  H  0  0  N  N  N  -19.583  -10.872  16.614    0.911  -1.344  -0.642  H161  2QR  60  
2QR  H182  H182  H  0  0  N  N  N  -17.724  -13.875  12.566    3.575   2.557   0.284  H182  2QR  61  
2QR  H181  H181  H  0  0  N  N  N  -17.200  -12.212  12.994    3.704   1.669   1.821  H181  2QR  62  
2QR  H191  H191  H  0  0  N  N  N  -16.438  -13.501  14.751    3.976  -0.454   0.596  H191  2QR  63  
2QR  H201  H201  H  0  0  N  N  N  -17.578  -11.741  15.788    4.131  -0.464  -1.863  H201  2QR  64  
2QR  H211  H211  H  0  0  N  N  N  -18.323  -12.885  17.669    3.605   1.578  -2.992  H211  2QR  65  
2QR  H2    H2    H  0  1  N  N  N  -18.891  -14.933  14.310    5.730   1.785  -0.097  H2    2QR  66  
2QR  H231  H231  H  0  0  N  N  N  -16.221  -15.550  14.718    5.756   0.870   2.154  H231  2QR  67  
2QR  H4    H4    H  0  1  N  N  N  -17.211  -15.634  13.221    6.097  -0.715   1.420  H4    2QR  68  
2QR  H261  H261  H  0  0  N  N  N  -17.338  -17.317  17.684    7.144   2.753   3.196  H261  2QR  69  
2QR  H282  H282  H  0  0  N  N  N  -17.797  -20.660  17.456   10.279   3.427   3.236  H282  2QR  70  
2QR  H281  H281  H  0  0  N  N  N  -16.703  -19.321  17.942   10.923   3.794   1.617  H281  2QR  71  
2QR  H283  H283  H  0  0  N  N  N  -18.483  -19.087  17.988    9.266   4.281   2.047  H283  2QR  72  
2QR  H301  H301  H  0  0  N  N  N  -17.846  -20.199  12.879   10.665  -0.558   0.323  H301  2QR  73  
2QR  H322  H322  H  0  0  N  N  N  -17.992  -16.602  12.046    7.667  -2.100   1.033  H322  2QR  74  
2QR  H321  H321  H  0  0  N  N  N  -18.132  -18.269  11.393    7.446  -1.394  -0.586  H321  2QR  75  
2QR  H5    H5    H  0  1  N  N  N  -17.428  -15.059  10.001   10.612  -5.105  -1.810  H5    2QR  76  
2QR  H6    H6    H  0  1  N  N  N  -14.512  -16.815   8.975    9.251  -4.844   1.027  H6    2QR  77  
2QR  H7    H7    H  0  1  N  N  N  -18.704   -8.566  11.931   -1.005   2.458   1.729  H7    2QR  78  
2QR  H411  H411  H  0  0  N  N  N  -14.408   -3.880  15.749   -8.291  -2.608  -0.929  H411  2QR  79  
2QR  H431  H431  H  0  0  N  N  N  -16.518   -5.515  13.201   -9.247  -3.948   0.649  H431  2QR  80  
2QR  H441  H441  H  0  0  N  N  N  -15.821   -5.678  10.727  -10.093  -4.292   2.911  H441  2QR  81  
2QR  H461  H461  H  0  0  N  N  N  -12.531   -2.999  11.565   -9.543  -0.222   3.635  H461  2QR  82  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2QR  O37  P34   DOUB  N  N   1  
2QR  O48  C47   DOUB  N  N   2  
2QR  O36  P34   SING  N  N   3  
2QR  P34  O35   SING  N  N   4  
2QR  P34  O33   SING  N  N   5  
2QR  C47  C44   SING  N  N   6  
2QR  C47  N46   SING  N  N   7  
2QR  C44  C43   DOUB  N  N   8  
2QR  O33  C32   SING  N  N   9  
2QR  N46  C45   SING  N  N  10  
2QR  C32  C31   SING  N  N  11  
2QR  O12  P11   DOUB  N  N  12  
2QR  O38  P11   SING  N  N  13  
2QR  C43  N42   SING  N  N  14  
2QR  O17  C18   SING  N  N  15  
2QR  O17  C14   SING  N  N  16  
2QR  C18  C19   SING  N  N  17  
2QR  C45  N42   SING  N  N  18  
2QR  C45  O49   DOUB  N  N  19  
2QR  C31  C30   DOUB  Y  N  20  
2QR  C31  C24   SING  Y  N  21  
2QR  P11  O13   SING  N  N  22  
2QR  P11  O10   SING  N  N  23  
2QR  C30  N29   SING  Y  N  24  
2QR  N42  C41   SING  N  N  25  
2QR  C14  O13   SING  N  N  26  
2QR  C14  C15   SING  N  N  27  
2QR  C23  C24   SING  N  N  28  
2QR  C23  N22   SING  N  N  29  
2QR  C24  C25   DOUB  Y  N  30  
2QR  C19  N22   SING  N  N  31  
2QR  C19  C20   SING  N  N  32  
2QR  O10  P08   SING  N  N  33  
2QR  N29  C27   DOUB  Y  N  34  
2QR  C41  C02   SING  N  N  35  
2QR  C41  O40   SING  N  N  36  
2QR  C03  C02   SING  N  N  37  
2QR  C03  C05   SING  N  N  38  
2QR  C03  O04   SING  N  N  39  
2QR  C02  O01   SING  N  N  40  
2QR  C06  C05   SING  N  N  41  
2QR  C06  O07   SING  N  N  42  
2QR  C15  C20   SING  N  N  43  
2QR  C15  O16   SING  N  N  44  
2QR  O40  C05   SING  N  N  45  
2QR  C20  O21   SING  N  N  46  
2QR  C25  C27   SING  Y  N  47  
2QR  C25  O26   SING  N  N  48  
2QR  C27  C28   SING  N  N  49  
2QR  O07  P08   SING  N  N  50  
2QR  P08  O39   DOUB  N  N  51  
2QR  P08  O09   SING  N  N  52  
2QR  O01  H011  SING  N  N  53  
2QR  C02  H021  SING  N  N  54  
2QR  C03  H031  SING  N  N  55  
2QR  O04  H041  SING  N  N  56  
2QR  C05  H051  SING  N  N  57  
2QR  C06  H061  SING  N  N  58  
2QR  C06  H062  SING  N  N  59  
2QR  O09  H1    SING  N  N  60  
2QR  C14  H141  SING  N  N  61  
2QR  C15  H151  SING  N  N  62  
2QR  O16  H161  SING  N  N  63  
2QR  C18  H182  SING  N  N  64  
2QR  C18  H181  SING  N  N  65  
2QR  C19  H191  SING  N  N  66  
2QR  C20  H201  SING  N  N  67  
2QR  O21  H211  SING  N  N  68  
2QR  N22  H2    SING  N  N  69  
2QR  C23  H231  SING  N  N  70  
2QR  C23  H4    SING  N  N  71  
2QR  O26  H261  SING  N  N  72  
2QR  C28  H282  SING  N  N  73  
2QR  C28  H281  SING  N  N  74  
2QR  C28  H283  SING  N  N  75  
2QR  C30  H301  SING  N  N  76  
2QR  C32  H322  SING  N  N  77  
2QR  C32  H321  SING  N  N  78  
2QR  O35  H5    SING  N  N  79  
2QR  O36  H6    SING  N  N  80  
2QR  O38  H7    SING  N  N  81  
2QR  C41  H411  SING  N  N  82  
2QR  C43  H431  SING  N  N  83  
2QR  C44  H441  SING  N  N  84  
2QR  N46  H461  SING  N  N  85  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2QR  SMILES            ACDLabs               12.01  "O=C1C=CN(C(=O)N1)C2OC(C(O)C2O)COP(=O)(OP(=O)(OC4OCC(NCc3c(cnc(c3O)C)COP(=O)(O)O)C(O)C4O)O)O"  
2QR  InChI             InChI                 1.03   "InChI=1S/C22H33N4O20P3/c1-9-15(28)11(10(4-23-9)6-42-47(34,35)36)5-24-12-7-41-21(19(32)16(12)29)45-49(39,40)46-48(37,38)43-8-13-17(30)18(31)20(44-13)26-3-2-14(27)25-22(26)33/h2-4,12-13,16-21,24,28-32H,5-8H2,1H3,(H,37,38)(H,39,40)(H,25,27,33)(H2,34,35,36)/t12-,13+,16-,17+,18+,19+,20+,21+/m0/s1"  
2QR  InChIKey          InChI                 1.03   SNDXWZNPMTZYQI-LLAQWDROSA-N  
2QR  SMILES_CANONICAL  CACTVS                3.385  "Cc1ncc(CO[P](O)(O)=O)c(CN[C@H]2CO[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)N4C=CC(=O)NC4=O)[C@H](O)[C@H]2O)c1O"  
2QR  SMILES            CACTVS                3.385  "Cc1ncc(CO[P](O)(O)=O)c(CN[CH]2CO[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)N4C=CC(=O)NC4=O)[CH](O)[CH]2O)c1O"  
2QR  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@H]2CO[C@@H]([C@@H]([C@H]2O)O)OP(=O)(O)OP(=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)N4C=CC(=O)NC4=O)O)O)O"  
2QR  SMILES            "OpenEye OEToolkits"  1.7.6  "Cc1c(c(c(cn1)COP(=O)(O)O)CNC2COC(C(C2O)O)OP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)N4C=CC(=O)NC4=O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2QR  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2R,3R,4S,5S)-3,4-dihydroxy-5-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]tetrahydro-2H-pyran-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)"  
2QR  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "[[(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3R,4S,5S)-5-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-3,4-bis(oxidanyl)oxan-2-yl] hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2QR  "Create component"  2014-01-09  RCSB  
2QR  "Initial release"   2014-03-12  RCSB  
2QR  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     2QR
_pdbx_chem_comp_synonyms.name        PLP-UDP-Ara4N
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
