data_HDQ
#

_chem_comp.id                                   HDQ
_chem_comp.name                                 "3-[(3~{S},4~{R})-4-azanyl-4-carboxy-1-[[(2~{S})-piperidin-2-yl]methyl]pyrrolidin-3-yl]propyl-tris(oxidanyl)boranuide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C14 H29 B N3 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   -1
_chem_comp.pdbx_initial_date                    2018-12-04
_chem_comp.pdbx_modified_date                   2019-08-23
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       330.208
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    HDQ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6Q39
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HDQ  C11  C1   C   0  1  N  N  N  35.405  85.556  71.150   0.044  -0.000   1.448  C11  HDQ   1  
HDQ  C13  C2   C   0  1  N  N  N  34.068  88.753  71.630   0.079  -2.529  -0.991  C13  HDQ   2  
HDQ  B6   B1   B  -1  1  N  N  N  37.715  86.800  66.308   4.900   1.615  -0.147  B6   HDQ   3  
HDQ  C1   C3   C   0  1  N  N  R  33.690  87.298  71.411  -0.162  -2.236   0.467  C1   HDQ   4  
HDQ  C16  C4   C   0  1  N  N  N  34.797  84.167  72.977  -2.294   0.667   1.323  C16  HDQ   5  
HDQ  C17  C5   C   0  1  N  N  S  33.844  83.894  74.130  -3.526   0.688   0.416  C17  HDQ   6  
HDQ  C19  C6   C   0  1  N  N  N  31.627  82.773  74.563  -5.852   1.355   0.291  C19  HDQ   7  
HDQ  C2   C7   C   0  1  N  N  S  34.577  86.589  70.390   0.874  -1.218   0.988  C2   HDQ   8  
HDQ  C20  C8   C   0  1  N  N  N  32.184  82.630  75.975  -5.596   2.138  -0.999  C20  HDQ   9  
HDQ  C21  C9   C   0  1  N  N  N  33.602  82.077  75.929  -4.442   1.486  -1.765  C21  HDQ  10  
HDQ  C22  C10  C   0  1  N  N  N  34.547  82.973  75.127  -3.200   1.451  -0.869  C22  HDQ  11  
HDQ  C3   C11  C   0  1  N  N  N  35.538  87.440  69.576   1.833  -0.815  -0.134  C3   HDQ  12  
HDQ  C4   C12  C   0  1  N  N  N  36.236  86.615  68.477   2.864   0.177   0.409  C4   HDQ  13  
HDQ  C5   C13  C   0  1  N  N  N  37.013  87.549  67.530   3.823   0.580  -0.713  C5   HDQ  14  
HDQ  C9   C14  C   0  1  N  N  N  33.813  86.475  72.708  -1.531  -1.547   0.656  C9   HDQ  15  
HDQ  N10  N1   N   0  1  N  N  N  34.977  85.575  72.559  -1.220  -0.094   0.673  N10  HDQ  16  
HDQ  N12  N2   N   0  1  N  N  N  32.294  87.238  70.943  -0.102  -3.475   1.253  N12  HDQ  17  
HDQ  N18  N3   N   0  1  N  N  N  32.624  83.276  73.629  -4.636   1.351   1.113  N18  HDQ  18  
HDQ  O14  O1   O   0  1  N  N  N  35.166  89.048  72.184   0.907  -3.523  -1.347  O14  HDQ  19  
HDQ  O15  O2   O   0  1  N  N  N  33.243  89.634  71.249  -0.472  -1.868  -1.839  O15  HDQ  20  
HDQ  O23  O3   O   0  1  N  N  N  38.159  87.634  65.129   5.757   1.975  -1.149  O23  HDQ  21  
HDQ  O7   O4   O   0  1  N  N  N  36.563  86.070  65.562   4.259   2.726   0.326  O7   HDQ  22  
HDQ  O8   O5   O   0  1  N  N  N  38.628  85.670  66.711   5.605   1.029   0.868  O8   HDQ  23  
HDQ  H1   H1   H   0  1  N  N  N  35.238  84.556  70.723  -0.160  -0.061   2.517  H1   HDQ  24  
HDQ  H2   H2   H   0  1  N  N  N  36.473  85.810  71.081   0.566   0.928   1.214  H2   HDQ  25  
HDQ  H3   H3   H   0  1  N  N  N  34.427  83.609  72.104  -1.959   1.689   1.503  H3   HDQ  26  
HDQ  H4   H4   H   0  1  N  N  N  35.785  83.781  73.267  -2.550   0.196   2.273  H4   HDQ  27  
HDQ  H5   H5   H   0  1  N  N  N  33.604  84.844  74.630  -3.812  -0.335   0.169  H5   HDQ  28  
HDQ  H6   H6   H   0  1  N  N  N  30.778  83.472  74.586  -6.664   1.825   0.846  H6   HDQ  29  
HDQ  H7   H7   H   0  1  N  N  N  31.282  81.788  74.217  -6.127   0.329   0.044  H7   HDQ  30  
HDQ  H8   H8   H   0  1  N  N  N  33.923  86.050  69.689   1.428  -1.638   1.828  H8   HDQ  31  
HDQ  H9   H9   H   0  1  N  N  N  32.194  83.616  76.463  -6.495   2.127  -1.616  H9   HDQ  32  
HDQ  H10  H10  H   0  1  N  N  N  31.545  81.943  76.550  -5.335   3.167  -0.753  H10  HDQ  33  
HDQ  H11  H11  H   0  1  N  N  N  33.579  81.081  75.463  -4.718   0.469  -2.045  H11  HDQ  34  
HDQ  H12  H12  H   0  1  N  N  N  33.982  81.992  76.958  -4.228   2.065  -2.663  H12  HDQ  35  
HDQ  H13  H13  H   0  1  N  N  N  35.243  82.329  74.570  -2.901   2.469  -0.622  H13  HDQ  36  
HDQ  H14  H14  H   0  1  N  N  N  35.112  83.598  75.834  -2.387   0.949  -1.394  H14  HDQ  37  
HDQ  H15  H15  H   0  1  N  N  N  36.302  87.858  70.248   2.344  -1.701  -0.511  H15  HDQ  38  
HDQ  H16  H16  H   0  1  N  N  N  34.977  88.260  69.104   1.271  -0.348  -0.942  H16  HDQ  39  
HDQ  H17  H17  H   0  1  N  N  N  35.480  86.061  67.902   2.353   1.062   0.786  H17  HDQ  40  
HDQ  H18  H18  H   0  1  N  N  N  36.935  85.905  68.943   3.427  -0.290   1.217  H18  HDQ  41  
HDQ  H19  H19  H   0  1  N  N  N  37.791  88.063  68.113   3.261   1.047  -1.521  H19  HDQ  42  
HDQ  H20  H20  H   0  1  N  N  N  36.310  88.291  67.123   4.334  -0.306  -1.090  H20  HDQ  43  
HDQ  H21  H21  H   0  1  N  N  N  33.966  87.147  73.565  -2.194  -1.784  -0.176  H21  HDQ  44  
HDQ  H22  H22  H   0  1  N  N  N  32.899  85.883  72.865  -1.982  -1.851   1.600  H22  HDQ  45  
HDQ  H24  H24  H   0  1  N  N  N  31.701  87.699  71.603  -0.793  -4.138   0.935  H24  HDQ  46  
HDQ  H25  H25  H   0  1  N  N  N  32.221  87.692  70.055   0.823  -3.876   1.225  H25  HDQ  47  
HDQ  H27  H27  H   0  1  N  N  N  32.167  83.959  73.059  -4.807   0.923   2.010  H27  HDQ  48  
HDQ  H29  H29  H   0  1  N  N  N  35.243  89.992  72.252   1.031  -3.674  -2.295  H29  HDQ  49  
HDQ  H31  H31  H   0  1  N  N  N  36.132  85.467  66.157   4.852   3.399   0.687  H31  HDQ  50  
HDQ  H32  H32  H   0  1  N  N  N  38.257  85.213  67.457   5.060   0.748   1.615  H32  HDQ  51  
HDQ  H23  H23  H   0  1  N  N  N  38.892  88.181  65.386   5.324   2.398  -1.903  H23  HDQ  52  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HDQ  O23  B6   SING  N  N   1  
HDQ  O7   B6   SING  N  N   2  
HDQ  B6   O8   SING  N  N   3  
HDQ  B6   C5   SING  N  N   4  
HDQ  C5   C4   SING  N  N   5  
HDQ  C4   C3   SING  N  N   6  
HDQ  C3   C2   SING  N  N   7  
HDQ  C2   C11  SING  N  N   8  
HDQ  C2   C1   SING  N  N   9  
HDQ  N12  C1   SING  N  N  10  
HDQ  C11  N10  SING  N  N  11  
HDQ  O15  C13  DOUB  N  N  12  
HDQ  C1   C13  SING  N  N  13  
HDQ  C1   C9   SING  N  N  14  
HDQ  C13  O14  SING  N  N  15  
HDQ  N10  C9   SING  N  N  16  
HDQ  N10  C16  SING  N  N  17  
HDQ  C16  C17  SING  N  N  18  
HDQ  N18  C17  SING  N  N  19  
HDQ  N18  C19  SING  N  N  20  
HDQ  C17  C22  SING  N  N  21  
HDQ  C19  C20  SING  N  N  22  
HDQ  C22  C21  SING  N  N  23  
HDQ  C21  C20  SING  N  N  24  
HDQ  C11  H1   SING  N  N  25  
HDQ  C11  H2   SING  N  N  26  
HDQ  C16  H3   SING  N  N  27  
HDQ  C16  H4   SING  N  N  28  
HDQ  C17  H5   SING  N  N  29  
HDQ  C19  H6   SING  N  N  30  
HDQ  C19  H7   SING  N  N  31  
HDQ  C2   H8   SING  N  N  32  
HDQ  C20  H9   SING  N  N  33  
HDQ  C20  H10  SING  N  N  34  
HDQ  C21  H11  SING  N  N  35  
HDQ  C21  H12  SING  N  N  36  
HDQ  C22  H13  SING  N  N  37  
HDQ  C22  H14  SING  N  N  38  
HDQ  C3   H15  SING  N  N  39  
HDQ  C3   H16  SING  N  N  40  
HDQ  C4   H17  SING  N  N  41  
HDQ  C4   H18  SING  N  N  42  
HDQ  C5   H19  SING  N  N  43  
HDQ  C5   H20  SING  N  N  44  
HDQ  C9   H21  SING  N  N  45  
HDQ  C9   H22  SING  N  N  46  
HDQ  N12  H24  SING  N  N  47  
HDQ  N12  H25  SING  N  N  48  
HDQ  N18  H27  SING  N  N  49  
HDQ  O14  H29  SING  N  N  50  
HDQ  O7   H31  SING  N  N  51  
HDQ  O8   H32  SING  N  N  52  
HDQ  O23  H23  SING  N  N  53  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HDQ  InChI             InChI                 1.03   "InChI=1S/C14H29BN3O5/c16-14(13(19)20)10-18(9-12-5-1-2-7-17-12)8-11(14)4-3-6-15(21,22)23/h11-12,17,21-23H,1-10,16H2,(H,19,20)/q-1/t11-,12-,14-/m0/s1"  
HDQ  InChIKey          InChI                 1.03   UAQSNVVPOJZDTG-OBJOEFQTSA-N  
HDQ  SMILES_CANONICAL  CACTVS                3.385  "N[C@]1(CN(C[C@@H]2CCCCN2)C[C@@H]1CCC[B-](O)(O)O)C(O)=O"  
HDQ  SMILES            CACTVS                3.385  "N[C]1(CN(C[CH]2CCCCN2)C[CH]1CCC[B-](O)(O)O)C(O)=O"  
HDQ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "[B-](CCC[C@H]1CN(C[C@]1(C(=O)O)N)C[C@@H]2CCCCN2)(O)(O)O"  
HDQ  SMILES            "OpenEye OEToolkits"  2.0.6  "[B-](CCCC1CN(CC1(C(=O)O)N)CC2CCCCN2)(O)(O)O"  
#
_pdbx_chem_comp_identifier.comp_id          HDQ
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "3-[(3~{S},4~{R})-4-azanyl-4-carboxy-1-[[(2~{S})-piperidin-2-yl]methyl]pyrrolidin-3-yl]propyl-tris(oxidanyl)boranuide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HDQ  "Create component"  2018-12-04  EBI   
HDQ  "Initial release"   2019-08-28  RCSB  
##
