data_F4Q
#

_chem_comp.id                                   F4Q
_chem_comp.name                                 "[(1~{S},2~{R},4~{R},6~{S},8~{R})-8-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-6-oxidanyl-9-oxatricyclo[4.3.0.0^{2,4}]nonan-2-yl] dihydrogen phosphate"
_chem_comp.type                                 "DNA linking"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C13 H16 N5 O7 P"
_chem_comp.mon_nstd_parent_comp_id              DG
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-05-30
_chem_comp.pdbx_modified_date                   2019-05-06
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       385.269
_chem_comp.one_letter_code                      G
_chem_comp.three_letter_code                    F4Q
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6GN4
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
F4Q  C8      C1   C  0  1  Y  N  N   5.384  2.778  -5.052  -1.336  -0.463   1.450  C8      F4Q   1  
F4Q  C2      C2   C  0  1  N  N  N   1.307  4.405  -5.354  -4.805  -0.030  -1.302  C2      F4Q   2  
F4Q  C4      C3   C  0  1  Y  N  N   3.508  3.858  -5.290  -2.795  -0.120  -0.166  C4      F4Q   3  
F4Q  C5      C4   C  0  1  Y  N  N   3.280  2.533  -4.969  -3.446  -0.606   0.973  C5      F4Q   4  
F4Q  C6      C5   C  0  1  N  N  N   1.931  2.058  -4.844  -4.846  -0.797   0.924  C6      F4Q   5  
F4Q  P       P1   P  0  1  N  N  N  10.048  3.216  -5.676   3.653  -1.660  -0.391  P       F4Q   6  
F4Q  O1P     O1   O  0  1  N  N  N   9.822  4.181  -6.776   2.324  -1.883  -1.003  O1P     F4Q   7  
F4Q  O2P     O2   O  0  1  N  N  N  11.229  3.375  -4.794   4.682  -1.142  -1.515  O2P     F4Q   8  
F4Q  "O5'"   O3   O  0  1  N  N  N   8.726  3.189  -4.757   3.529  -0.554   0.773  "O5'"   F4Q   9  
F4Q  "C5'"   C6   C  0  1  N  N  R   8.347  4.292  -3.970   2.978   0.747   0.555  "C5'"   F4Q  10  
F4Q  "C4'"   C7   C  0  1  N  N  S   7.678  5.475  -4.647   1.880   0.877  -0.517  "C4'"   F4Q  11  
F4Q  "O4'"   O4   O  0  1  N  N  N   6.966  5.010  -5.803   0.864  -0.112  -0.271  "O4'"   F4Q  12  
F4Q  "C1'"   C8   C  0  1  N  N  R   5.571  5.278  -5.658  -0.389   0.430  -0.713  "C1'"   F4Q  13  
F4Q  N9      N1   N  0  1  Y  N  N   4.866  4.012  -5.346  -1.469  -0.035   0.161  N9      F4Q  14  
F4Q  N7      N2   N  0  1  Y  N  N   4.485  1.859  -4.823  -2.500  -0.801   1.924  N7      F4Q  15  
F4Q  O6      O5   O  0  1  N  N  N   1.553  0.915  -4.598  -5.454  -1.219   1.893  O6      F4Q  16  
F4Q  N1      N3   N  0  1  N  N  N   0.990  3.086  -5.039  -5.494  -0.501  -0.224  N1      F4Q  17  
F4Q  N2      N4   N  0  1  N  N  N   0.284  5.257  -5.494  -5.489   0.264  -2.455  N2      F4Q  18  
F4Q  N3      N5   N  0  1  N  N  N   2.577  4.838  -5.514  -3.505   0.160  -1.266  N3      F4Q  19  
F4Q  "C3'"   C9   C  0  1  N  N  S   6.676  6.083  -3.675   1.175   2.228  -0.188  "C3'"   F4Q  20  
F4Q  "C2'"   C10  C  0  1  N  N  N   5.413  6.262  -4.510  -0.279   1.964  -0.638  "C2'"   F4Q  21  
F4Q  "C7'"   C11  C  0  1  N  N  N   6.526  5.052  -2.524   1.233   2.287   1.355  "C7'"   F4Q  22  
F4Q  "C6'"   C12  C  0  1  N  N  S   7.641  4.032  -2.670   2.564   1.639   1.736  "C6'"   F4Q  23  
F4Q  "C8'"   C13  C  0  1  N  N  N   9.044  4.559  -2.668   3.810   1.979   0.918  "C8'"   F4Q  24  
F4Q  "O3'"   O6   O  0  1  N  N  N   7.165  7.329  -3.181   1.771   3.360  -0.824  "O3'"   F4Q  25  
F4Q  H8      H1   H  0  1  N  N  N   6.445  2.582  -5.013  -0.405  -0.516   1.993  H8      F4Q  26  
F4Q  H3      H3   H  0  1  N  N  N  11.729  4.135  -5.068   5.575  -0.974  -1.184  H3      F4Q  27  
F4Q  "H4'"   H4   H  0  1  N  N  N   8.434  6.225  -4.922   2.277   0.843  -1.531  "H4'"   F4Q  28  
F4Q  "H1'"   H5   H  0  1  N  N  N   5.161  5.720  -6.578  -0.585   0.121  -1.740  "H1'"   F4Q  29  
F4Q  H1      H6   H  0  1  N  N  N   0.022  2.852  -4.944  -6.454  -0.629  -0.284  H1      F4Q  30  
F4Q  H22     H7   H  0  1  N  N  N   0.459  6.216  -5.717  -6.450   0.135  -2.494  H22     F4Q  31  
F4Q  H21     H8   H  0  1  N  N  N  -0.655  4.935  -5.375  -5.012   0.600  -3.230  H21     F4Q  32  
F4Q  "H2'"   H9   H  0  1  N  N  N   5.340  7.292  -4.889  -0.460   2.407  -1.617  "H2'"   F4Q  33  
F4Q  "H2''"  H10  H  0  0  N  N  N   4.518  6.026  -3.916  -0.982   2.360   0.095  "H2''"  F4Q  34  
F4Q  "H7'"   H11  H  0  1  N  N  N   6.608  5.561  -1.552   1.190   3.321   1.697  "H7'"   F4Q  35  
F4Q  "H7''"  H12  H  0  0  N  N  N   5.549  4.552  -2.594   0.416   1.710   1.788  "H7''"  F4Q  36  
F4Q  "H6'"   H13  H  0  1  N  N  N   7.456  2.994  -2.358   2.681   1.299   2.765  "H6'"   F4Q  37  
F4Q  "H8'"   H14  H  0  1  N  N  N   9.874  3.912  -2.346   4.780   1.810   1.386  "H8'"   F4Q  38  
F4Q  "H8''"  H15  H  0  0  N  N  N   9.242  5.594  -2.353   3.754   2.838   0.250  "H8''"  F4Q  39  
F4Q  H4      H16  H  0  1  N  N  N   6.534  7.700  -2.576   1.336   4.200  -0.622  H4      F4Q  40  
F4Q  OP3     OP3  O  0  1  N  Y  N  10.098  1.710  -6.310   4.194  -3.040   0.237  OP3     F4Q  41  
F4Q  H6      H18  H  0  1  N  N  N   9.973  1.758  -7.251   4.293  -3.753  -0.409  H6      F4Q  42  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
F4Q  O1P    P       DOUB  N  N   1  
F4Q  "O4'"  "C1'"   SING  N  N   2  
F4Q  "O4'"  "C4'"   SING  N  N   3  
F4Q  P      O2P     SING  N  N   4  
F4Q  P      "O5'"   SING  N  N   5  
F4Q  "C1'"  N9      SING  N  N   6  
F4Q  "C1'"  "C2'"   SING  N  N   7  
F4Q  N3     C2      DOUB  N  N   8  
F4Q  N3     C4      SING  N  N   9  
F4Q  N2     C2      SING  N  N  10  
F4Q  C2     N1      SING  N  N  11  
F4Q  N9     C4      SING  Y  N  12  
F4Q  N9     C8      SING  Y  N  13  
F4Q  C4     C5      DOUB  Y  N  14  
F4Q  C8     N7      DOUB  Y  N  15  
F4Q  N1     C6      SING  N  N  16  
F4Q  C5     C6      SING  N  N  17  
F4Q  C5     N7      SING  Y  N  18  
F4Q  C6     O6      DOUB  N  N  19  
F4Q  "O5'"  "C5'"   SING  N  N  20  
F4Q  "C4'"  "C5'"   SING  N  N  21  
F4Q  "C4'"  "C3'"   SING  N  N  22  
F4Q  "C2'"  "C3'"   SING  N  N  23  
F4Q  "C5'"  "C6'"   SING  N  N  24  
F4Q  "C5'"  "C8'"   SING  N  N  25  
F4Q  "C3'"  "O3'"   SING  N  N  26  
F4Q  "C3'"  "C7'"   SING  N  N  27  
F4Q  "C6'"  "C8'"   SING  N  N  28  
F4Q  "C6'"  "C7'"   SING  N  N  29  
F4Q  C8     H8      SING  N  N  30  
F4Q  O2P    H3      SING  N  N  31  
F4Q  "C4'"  "H4'"   SING  N  N  32  
F4Q  "C1'"  "H1'"   SING  N  N  33  
F4Q  N1     H1      SING  N  N  34  
F4Q  N2     H22     SING  N  N  35  
F4Q  N2     H21     SING  N  N  36  
F4Q  "C2'"  "H2'"   SING  N  N  37  
F4Q  "C2'"  "H2''"  SING  N  N  38  
F4Q  "C7'"  "H7'"   SING  N  N  39  
F4Q  "C7'"  "H7''"  SING  N  N  40  
F4Q  "C6'"  "H6'"   SING  N  N  41  
F4Q  "C8'"  "H8'"   SING  N  N  42  
F4Q  "C8'"  "H8''"  SING  N  N  43  
F4Q  "O3'"  H4      SING  N  N  44  
F4Q  P      OP3     SING  N  N  45  
F4Q  OP3    H6      SING  N  N  46  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
F4Q  InChI             InChI                 1.03   "InChI=1S/C13H16N5O7P/c14-11-16-8-7(9(19)17-11)15-4-18(8)6-3-12(20)1-5-2-13(5,10(12)24-6)25-26(21,22)23/h4-6,10,20H,1-3H2,(H2,21,22,23)(H3,14,16,17,19)/t5-,6-,10+,12+,13-/m1/s1"  
F4Q  InChIKey          InChI                 1.03   MBCAKWZNBKUSBI-CFFIBIDHSA-N  
F4Q  SMILES_CANONICAL  CACTVS                3.385  "NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@@]4(O)C[C@@H]5C[C@]5(O[P](O)(O)=O)[C@H]4O3"  
F4Q  SMILES            CACTVS                3.385  "NC1=Nc2n(cnc2C(=O)N1)[CH]3C[C]4(O)C[CH]5C[C]5(O[P](O)(O)=O)[CH]4O3"  
F4Q  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1nc2c(n1[C@H]3C[C@]4(C[C@@H]5C[C@@]5([C@H]4O3)OP(=O)(O)O)O)N=C(NC2=O)N"  
F4Q  SMILES            "OpenEye OEToolkits"  2.0.6  "c1nc2c(n1C3CC4(CC5CC5(C4O3)OP(=O)(O)O)O)N=C(NC2=O)N"  
#
_pdbx_chem_comp_identifier.comp_id          F4Q
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "[(1~{S},2~{R},4~{R},6~{S},8~{R})-8-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-6-oxidanyl-9-oxatricyclo[4.3.0.0^{2,4}]nonan-2-yl] dihydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
F4Q  "Create component"        2018-05-30  EBI   
F4Q  "Initial release"         2018-06-06  RCSB  
F4Q  "Modify one letter code"  2019-05-06  EBI   
##
