data_VHP
# 
_chem_comp.id                                    VHP 
_chem_comp.name                                  "N-[(benzyloxy)carbonyl]-O-tert-butyl-L-threonyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H46 N4 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-08-13 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        562.698 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VHP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7JQ3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VHP C1  C1  C 0 1 Y N N N N N 44.507 10.094 -17.242 9.538  -1.379 -1.800 C1  VHP 1  
VHP C10 C2  C 0 1 N N N N N N 44.930 7.137  -12.351 -0.972 3.134  -0.099 C10 VHP 2  
VHP C11 C3  C 0 1 N N S N N N 42.581 4.129  -15.005 1.653  0.567  0.999  C11 VHP 3  
VHP C12 C4  C 0 1 N N N N N N 41.821 2.893  -14.703 0.422  -0.034 0.372  C12 VHP 4  
VHP C13 C5  C 0 1 N N N N N N 42.502 6.642  -11.909 0.414  4.116  -1.931 C13 VHP 5  
VHP C14 C6  C 0 1 N N S N N N 41.521 0.604  -15.157 -1.916 -0.714 0.485  C14 VHP 6  
VHP C15 C7  C 0 1 N N N N N N 41.958 0.068  -13.816 -3.173 -0.091 1.033  C15 VHP 7  
VHP C16 C8  C 0 1 N N N N N N 43.119 8.218  -13.773 0.836  4.770  0.444  C16 VHP 8  
VHP C17 C9  C 0 1 N N S N N N 41.029 -0.642 -11.605 -5.601 0.044  1.189  C17 VHP 9  
VHP C18 C10 C 0 1 N N N N N N 43.923 3.715  -12.962 2.813  2.705  1.572  C18 VHP 10 
VHP C19 C11 C 0 1 N N N N N N 39.876 0.080  -10.895 -6.755 -0.192 0.212  C19 VHP 11 
VHP C2  C12 C 0 1 Y N N N N N 43.162 10.105 -16.883 9.267  -0.072 -1.438 C2  VHP 12 
VHP C20 C13 C 0 1 N N S N N N 40.145 1.581  -10.892 -6.474 0.548  -1.098 C20 VHP 13 
VHP C21 C14 C 0 1 N N N N N N 41.438 1.845  -10.123 -7.641 0.350  -2.092 C21 VHP 14 
VHP C22 C15 C 0 1 N N N N N N 41.082 2.500  -8.784  -7.153 -0.863 -2.914 C22 VHP 15 
VHP C24 C16 C 0 1 N N N N N N 39.129 2.361  -10.126 -5.280 -0.058 -1.802 C24 VHP 16 
VHP C27 C17 C 0 1 N N N N N N 40.761 -2.145 -11.704 -5.939 -0.591 2.539  C27 VHP 17 
VHP C3  C18 C 0 1 Y N N N N N 42.286 9.160  -17.396 8.233  0.202  -0.562 C3  VHP 18 
VHP C30 C19 C 0 1 N N R N N N 42.968 4.695  -13.653 1.537  2.093  0.990  C30 VHP 19 
VHP C34 C20 C 0 1 N N N N N N 41.891 -0.247 -16.363 -1.870 -2.194 0.869  C34 VHP 20 
VHP C35 C21 C 0 1 N N N N N N 41.334 0.251  -17.702 -0.659 -2.856 0.209  C35 VHP 21 
VHP C36 C22 C 0 1 N N N N N N 41.513 -0.797 -18.779 -0.542 -4.303 0.692  C36 VHP 22 
VHP C37 C23 C 0 1 N N N N N N 39.846 0.436  -17.682 -0.833 -2.838 -1.311 C37 VHP 23 
VHP C4  C24 C 0 1 Y N N N N N 42.759 8.203  -18.278 7.470  -0.831 -0.048 C4  VHP 24 
VHP C5  C25 C 0 1 Y N N N N N 44.112 8.182  -18.622 7.741  -2.137 -0.411 C5  VHP 25 
VHP C6  C26 C 0 1 Y N N N N N 44.997 9.129  -18.115 8.771  -2.410 -1.291 C6  VHP 26 
VHP C7  C27 C 0 1 N N N N N N 41.796 7.169  -18.817 6.344  -0.532 0.907  C7  VHP 27 
VHP C8  C28 C 0 1 N N N N N N 43.535 6.985  -12.979 0.426  3.623  -0.482 C8  VHP 28 
VHP C9  C29 C 0 1 N N N N N N 42.212 5.596  -16.928 4.008  -0.043 0.870  C9  VHP 29 
VHP N10 N1  N 0 1 N N N N N N 41.755 4.997  -15.833 2.836  0.163  0.237  N10 VHP 30 
VHP N13 N2  N 0 1 N N N N N N 42.214 1.841  -15.399 -0.748 -0.029 1.043  N13 VHP 31 
VHP N16 N3  N 0 1 N N N N N N 40.932 -0.148 -12.981 -4.378 -0.562 0.656  N16 VHP 32 
VHP N23 N4  N 0 1 N N N N N N 39.691 2.842  -9.026  -5.688 -0.838 -2.817 N23 VHP 33 
VHP O26 O1  O 0 1 N N N N N N 37.981 2.531  -10.494 -4.122 0.134  -1.496 O26 VHP 34 
VHP O28 O2  O 0 1 N N N N N N 40.554 -2.760 -10.426 -6.252 -1.973 2.351  O28 VHP 35 
VHP O29 O3  O 0 1 N N N N N N 43.376 5.481  -17.287 4.064  0.024  2.082  O29 VHP 36 
VHP O32 O4  O 0 1 N N N N N N 43.620 5.924  -13.912 1.359  2.549  -0.352 O32 VHP 37 
VHP O33 O5  O 0 1 N N N N N N 40.922 2.897  -13.870 0.483  -0.523 -0.736 O33 VHP 38 
VHP O38 O6  O 0 1 N N N N N N 43.145 -0.102 -13.542 -3.101 0.835  1.813  O38 VHP 39 
VHP O8  O7  O 0 1 N N N N N N 41.303 6.426  -17.708 5.117  -0.322 0.159  O8  VHP 40 
VHP H1  H1  H 0 1 N N N N N N 45.175 10.841 -16.839 10.346 -1.593 -2.484 H1  VHP 41 
VHP H2  H2  H 0 1 N N N N N N 44.914 7.954  -11.615 -1.679 3.961  -0.170 H2  VHP 42 
VHP H3  H3  H 0 1 N N N N N N 45.211 6.198  -11.851 -1.277 2.336  -0.776 H3  VHP 43 
VHP H4  H4  H 0 1 N N N N N N 45.663 7.367  -13.138 -0.957 2.757  0.924  H4  VHP 44 
VHP H5  H5  H 0 1 N N N N N N 43.498 3.864  -15.552 1.746  0.216  2.027  H5  VHP 45 
VHP H6  H6  H 0 1 N N N N N N 42.436 7.467  -11.184 1.410  4.465  -2.204 H6  VHP 46 
VHP H7  H7  H 0 1 N N N N N N 41.521 6.491  -12.382 0.121  3.299  -2.590 H7  VHP 47 
VHP H8  H8  H 0 1 N N N N N N 42.804 5.721  -11.389 -0.298 4.936  -2.030 H8  VHP 48 
VHP H9  H9  H 0 1 N N N N N N 40.433 0.768  -15.149 -1.907 -0.621 -0.601 H9  VHP 49 
VHP H10 H10 H 0 1 N N N N N N 43.036 9.080  -13.095 0.769  4.442  1.481  H10 VHP 50 
VHP H11 H11 H 0 1 N N N N N N 43.874 8.429  -14.544 1.862  5.066  0.222  H11 VHP 51 
VHP H12 H12 H 0 1 N N N N N N 42.146 8.034  -14.253 0.171  5.619  0.287  H12 VHP 52 
VHP H13 H13 H 0 1 N N N N N N 42.001 -0.426 -11.137 -5.449 1.115  1.319  H13 VHP 53 
VHP H14 H14 H 0 1 N N N N N N 44.211 4.115  -11.979 3.652  2.492  0.910  H14 VHP 54 
VHP H15 H15 H 0 1 N N N N N N 43.421 2.745  -12.830 2.688  3.784  1.665  H15 VHP 55 
VHP H16 H16 H 0 1 N N N N N N 44.822 3.581  -13.581 3.007  2.275  2.555  H16 VHP 56 
VHP H17 H17 H 0 1 N N N N N N 38.934 -0.123 -11.425 -6.850 -1.260 0.013  H17 VHP 57 
VHP H18 H18 H 0 1 N N N N N N 39.799 -0.281 -9.859  -7.682 0.180  0.648  H18 VHP 58 
VHP H19 H19 H 0 1 N N N N N N 42.797 10.857 -16.199 9.863  0.734  -1.839 H19 VHP 59 
VHP H20 H20 H 0 1 N N N N N N 40.230 1.956  -11.922 -6.307 1.608  -0.907 H20 VHP 60 
VHP H21 H21 H 0 1 N N N N N N 41.964 0.895  -9.944  -8.567 0.118  -1.566 H21 VHP 61 
VHP H22 H22 H 0 1 N N N N N N 42.085 2.518  -10.705 -7.765 1.227  -2.728 H22 VHP 62 
VHP H23 H23 H 0 1 N N N N N N 41.188 1.796  -7.945  -7.543 -1.788 -2.489 H23 VHP 63 
VHP H24 H24 H 0 1 N N N N N N 41.694 3.394  -8.592  -7.465 -0.765 -3.954 H24 VHP 64 
VHP H25 H25 H 0 1 N N N N N N 39.862 -2.302 -12.319 -5.082 -0.501 3.207  H25 VHP 65 
VHP H26 H26 H 0 1 N N N N N N 41.624 -2.624 -12.188 -6.796 -0.080 2.977  H26 VHP 66 
VHP H27 H27 H 0 1 N N N N N N 41.245 9.170  -17.110 8.021  1.222  -0.279 H27 VHP 67 
VHP H28 H28 H 0 1 N N N N N N 42.070 4.838  -13.034 0.681  2.395  1.593  H28 VHP 68 
VHP H29 H29 H 0 1 N N N N N N 41.510 -1.265 -16.192 -1.789 -2.286 1.952  H29 VHP 69 
VHP H30 H30 H 0 1 N N N N N N 42.988 -0.274 -16.438 -2.782 -2.686 0.530  H30 VHP 70 
VHP H31 H31 H 0 1 N N N N N N 41.834 1.186  -17.993 0.245  -2.309 0.478  H31 VHP 71 
VHP H32 H32 H 0 1 N N N N N N 42.583 -1.026 -18.894 0.321  -4.775 0.222  H32 VHP 72 
VHP H33 H33 H 0 1 N N N N N N 40.971 -1.711 -18.495 -0.418 -4.316 1.775  H33 VHP 73 
VHP H34 H34 H 0 1 N N N N N N 41.115 -0.416 -19.731 -1.446 -4.850 0.424  H34 VHP 74 
VHP H35 H35 H 0 1 N N N N N N 39.580 1.188  -16.925 -1.737 -3.385 -1.579 H35 VHP 75 
VHP H36 H36 H 0 1 N N N N N N 39.505 0.775  -18.671 -0.916 -1.807 -1.655 H36 VHP 76 
VHP H37 H37 H 0 1 N N N N N N 39.361 -0.520 -17.435 0.030  -3.309 -1.781 H37 VHP 77 
VHP H38 H38 H 0 1 N N N N N N 44.478 7.418  -19.292 7.146  -2.943 -0.009 H38 VHP 78 
VHP H39 H39 H 0 1 N N N N N N 46.040 9.115  -18.393 8.983  -3.431 -1.574 H39 VHP 79 
VHP H40 H40 H 0 1 N N N N N N 40.963 7.666  -19.337 6.214  -1.372 1.590  H40 VHP 80 
VHP H41 H41 H 0 1 N N N N N N 42.317 6.499  -19.517 6.580  0.367  1.477  H41 VHP 81 
VHP H42 H42 H 0 1 N N N N N N 40.803 5.149  -15.566 2.777  0.043  -0.724 H42 VHP 82 
VHP H43 H43 H 0 1 N N N N N N 42.959 1.902  -16.063 -0.815 0.429  1.895  H43 VHP 83 
VHP H44 H44 H 0 1 N N N N N N 40.015 0.046  -13.330 -4.436 -1.303 0.032  H44 VHP 84 
VHP H45 H45 H 0 1 N N N N N N 39.178 3.417  -8.389  -5.092 -1.322 -3.410 H45 VHP 85 
VHP H46 H46 H 0 1 N N N N N N 40.393 -3.689 -10.543 -6.477 -2.440 3.167  H46 VHP 86 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VHP C7  C4  SING N N 1  
VHP C7  O8  SING N N 2  
VHP C36 C35 SING N N 3  
VHP C5  C4  DOUB Y N 4  
VHP C5  C6  SING Y N 5  
VHP C4  C3  SING Y N 6  
VHP C6  C1  DOUB Y N 7  
VHP O8  C9  SING N N 8  
VHP C35 C37 SING N N 9  
VHP C35 C34 SING N N 10 
VHP C3  C2  DOUB Y N 11 
VHP O29 C9  DOUB N N 12 
VHP C1  C2  SING Y N 13 
VHP C9  N10 SING N N 14 
VHP C34 C14 SING N N 15 
VHP N10 C11 SING N N 16 
VHP N13 C14 SING N N 17 
VHP N13 C12 SING N N 18 
VHP C14 C15 SING N N 19 
VHP C11 C12 SING N N 20 
VHP C11 C30 SING N N 21 
VHP C12 O33 DOUB N N 22 
VHP O32 C30 SING N N 23 
VHP O32 C8  SING N N 24 
VHP C15 O38 DOUB N N 25 
VHP C15 N16 SING N N 26 
VHP C16 C8  SING N N 27 
VHP C30 C18 SING N N 28 
VHP N16 C17 SING N N 29 
VHP C8  C10 SING N N 30 
VHP C8  C13 SING N N 31 
VHP C27 C17 SING N N 32 
VHP C27 O28 SING N N 33 
VHP C17 C19 SING N N 34 
VHP C19 C20 SING N N 35 
VHP C20 C24 SING N N 36 
VHP C20 C21 SING N N 37 
VHP O26 C24 DOUB N N 38 
VHP C24 N23 SING N N 39 
VHP C21 C22 SING N N 40 
VHP N23 C22 SING N N 41 
VHP C1  H1  SING N N 42 
VHP C10 H2  SING N N 43 
VHP C10 H3  SING N N 44 
VHP C10 H4  SING N N 45 
VHP C11 H5  SING N N 46 
VHP C13 H6  SING N N 47 
VHP C13 H7  SING N N 48 
VHP C13 H8  SING N N 49 
VHP C14 H9  SING N N 50 
VHP C16 H10 SING N N 51 
VHP C16 H11 SING N N 52 
VHP C16 H12 SING N N 53 
VHP C17 H13 SING N N 54 
VHP C18 H14 SING N N 55 
VHP C18 H15 SING N N 56 
VHP C18 H16 SING N N 57 
VHP C19 H17 SING N N 58 
VHP C19 H18 SING N N 59 
VHP C2  H19 SING N N 60 
VHP C20 H20 SING N N 61 
VHP C21 H21 SING N N 62 
VHP C21 H22 SING N N 63 
VHP C22 H23 SING N N 64 
VHP C22 H24 SING N N 65 
VHP C27 H25 SING N N 66 
VHP C27 H26 SING N N 67 
VHP C3  H27 SING N N 68 
VHP C30 H28 SING N N 69 
VHP C34 H29 SING N N 70 
VHP C34 H30 SING N N 71 
VHP C35 H31 SING N N 72 
VHP C36 H32 SING N N 73 
VHP C36 H33 SING N N 74 
VHP C36 H34 SING N N 75 
VHP C37 H35 SING N N 76 
VHP C37 H36 SING N N 77 
VHP C37 H37 SING N N 78 
VHP C5  H38 SING N N 79 
VHP C6  H39 SING N N 80 
VHP C7  H40 SING N N 81 
VHP C7  H41 SING N N 82 
VHP N10 H42 SING N N 83 
VHP N13 H43 SING N N 84 
VHP N16 H44 SING N N 85 
VHP N23 H45 SING N N 86 
VHP O28 H46 SING N N 87 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VHP SMILES           ACDLabs              12.01 "c1ccc(cc1)COC(NC(C(=O)NC(C(=O)NC(CC2C(NCC2)=O)CO)CC(C)C)C(C)OC(C)(C)C)=O"                                                                                                                                                                      
VHP InChI            InChI                1.03  "InChI=1S/C29H46N4O7/c1-18(2)14-23(26(36)31-22(16-34)15-21-12-13-30-25(21)35)32-27(37)24(19(3)40-29(4,5)6)33-28(38)39-17-20-10-8-7-9-11-20/h7-11,18-19,21-24,34H,12-17H2,1-6H3,(H,30,35)(H,31,36)(H,32,37)(H,33,38)/t19-,21+,22+,23+,24+/m1/s1" 
VHP InChIKey         InChI                1.03  AWESOLQTDOBPDY-FFYZIMEISA-N                                                                                                                                                                                                                     
VHP SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)[C@@H](NC(=O)OCc1ccccc1)[C@@H](C)OC(C)(C)C)C(=O)N[C@H](CO)C[C@@H]2CCNC2=O"                                                                                                                                                   
VHP SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)[CH](NC(=O)OCc1ccccc1)[CH](C)OC(C)(C)C)C(=O)N[CH](CO)C[CH]2CCNC2=O"                                                                                                                                                           
VHP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]([C@@H](C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]1CCNC1=O)CO)NC(=O)OCc2ccccc2)OC(C)(C)C"                                                                                                                                                  
VHP SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)CO)NC(=O)C(C(C)OC(C)(C)C)NC(=O)OCc2ccccc2"                                                                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VHP "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(benzyloxy)carbonyl]-O-tert-butyl-L-threonyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide"                                                                                                                       
VHP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[(2~{S},3~{R})-1-[[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-3-[(2-methylpropan-2-yl)oxy]-1-oxidanylidene-butan-2-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VHP "Create component"   2020-08-13 RCSB 
VHP "Modify coordinates" 2020-08-20 RCSB 
VHP "Initial release"    2020-12-23 RCSB 
VHP "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            VHP 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C27 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
