data_VEP
# 
_chem_comp.id                                    VEP 
_chem_comp.name                                  "N-(4-tert-butylphenyl)-N-[(1R)-2-[(oxan-4-yl)amino]-2-oxo-1-(pyridin-3-yl)ethyl]propanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H33 N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-08-05 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        423.548 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VEP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5RL3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VEP N1  N1  N 0 1 N N N N N N 8.013  2.038  22.610 -1.618 -1.005 -0.096 N1  VEP 1  
VEP C4  C1  C 0 1 N N N N N N 8.255  1.128  21.664 -1.307 -0.292 -1.196 C4  VEP 2  
VEP C5  C2  C 0 1 N N N N N N 8.925  3.150  22.862 -2.298 -2.296 -0.227 C5  VEP 3  
VEP C6  C3  C 0 1 N N N N N N 8.178  4.476  22.920 -1.988 -3.165 0.995  C6  VEP 4  
VEP C7  C4  C 0 1 N N N N N N 9.173  5.578  23.203 -2.764 -4.480 0.887  C7  VEP 5  
VEP C8  C5  C 0 1 N N N N N N 10.646 4.101  24.349 -4.517 -3.430 -0.369 C8  VEP 6  
VEP C10 C6  C 0 1 Y N N N N N 6.453  0.280  20.105 -1.633 2.129  -0.891 C10 VEP 7  
VEP C13 C7  C 0 1 Y N N N N N 4.803  1.436  18.801 -3.894 2.862  -0.721 C13 VEP 8  
VEP C15 C8  C 0 1 Y N N N N N 8.804  -1.486 22.479 1.586  0.542  -0.014 C15 VEP 9  
VEP C17 C9  C 0 1 Y N N N N N 11.189 -1.827 22.484 3.176  -0.942 -1.023 C17 VEP 10 
VEP C20 C10 C 0 1 Y N N N N N 8.829  -1.412 23.870 2.599  1.104  0.751  C20 VEP 11 
VEP C21 C11 C 0 1 N N N N N N 12.549 -1.809 24.655 5.597  -0.885 -0.390 C21 VEP 12 
VEP C22 C12 C 0 1 N N N N N N 12.680 -0.583 25.560 5.642  -2.371 -0.027 C22 VEP 13 
VEP C24 C13 C 0 1 N N N N N N 12.612 -3.070 25.537 6.075  -0.697 -1.831 C24 VEP 14 
VEP O1  O1  O 0 1 N N N N N N 9.244  1.169  20.943 -1.590 -0.719 -2.295 O1  VEP 15 
VEP C9  C14 C 0 1 N N N N N N 9.734  2.915  24.132 -3.811 -2.073 -0.311 C9  VEP 16 
VEP O2  O2  O 0 1 N N N N N N 9.902  5.331  24.421 -4.161 -4.200 0.781  O2  VEP 17 
VEP C3  C15 C 0 1 N N R N N N 7.164  0.069  21.432 -0.609 1.037  -1.061 C3  VEP 18 
VEP C14 C16 C 0 1 Y N N N N N 5.314  1.070  20.030 -2.987 1.826  -0.880 C14 VEP 19 
VEP C12 C17 C 0 1 Y N N N N N 5.452  0.992  17.665 -3.422 4.154  -0.581 C12 VEP 20 
VEP N2  N2  N 0 1 Y N N N N N 6.545  0.222  17.697 -2.127 4.404  -0.590 N2  VEP 21 
VEP C11 C18 C 0 1 Y N N N N N 7.012  -0.128 18.901 -1.236 3.443  -0.739 C11 VEP 22 
VEP N   N3  N 0 1 N N N N N N 7.567  -1.323 21.769 0.272  1.008  0.110  N   VEP 23 
VEP C2  C19 C 0 1 N N N N N N 6.751  -2.385 21.502 -0.183 1.431  1.306  C2  VEP 24 
VEP O   O3  O 0 1 N N N N N N 5.558  -2.240 21.302 -1.356 1.703  1.447  O   VEP 25 
VEP C1  C20 C 0 1 N N N N N N 7.369  -3.751 21.401 0.767  1.565  2.469  C1  VEP 26 
VEP C   C21 C 0 1 N N N N N N 7.121  -4.353 20.029 -0.023 1.531  3.779  C   VEP 27 
VEP C19 C22 C 0 1 Y N N N N N 10.027 -1.539 24.553 3.894  0.642  0.626  C19 VEP 28 
VEP C18 C23 C 0 1 Y N N N N N 11.227 -1.738 23.875 4.183  -0.380 -0.260 C18 VEP 29 
VEP C23 C24 C 0 1 N N N N N N 13.766 -1.833 23.732 6.508  -0.101 0.557  C23 VEP 30 
VEP C16 C25 C 0 1 Y N N N N N 9.997  -1.704 21.789 1.880  -0.480 -0.907 C16 VEP 31 
VEP H1  H1  H 0 1 N N N N N N 7.183  1.956  23.162 -1.389 -0.665 0.784  H1  VEP 32 
VEP H2  H2  H 0 1 N N N N N N 9.636  3.208  22.025 -1.952 -2.800 -1.130 H2  VEP 33 
VEP H3  H3  H 0 1 N N N N N N 7.681  4.664  21.957 -0.919 -3.375 1.031  H3  VEP 34 
VEP H4  H4  H 0 1 N N N N N N 7.425  4.442  23.721 -2.287 -2.639 1.902  H4  VEP 35 
VEP H5  H5  H 0 1 N N N N N N 9.885  5.640  22.367 -2.435 -5.025 0.002  H5  VEP 36 
VEP H6  H6  H 0 1 N N N N N N 8.633  6.532  23.297 -2.580 -5.085 1.775  H6  VEP 37 
VEP H7  H7  H 0 1 N N N N N N 11.197 3.961  25.291 -5.596 -3.278 -0.385 H7  VEP 38 
VEP H8  H8  H 0 1 N N N N N N 11.358 4.162  23.513 -4.210 -3.961 -1.270 H8  VEP 39 
VEP H9  H9  H 0 1 N N N N N N 3.919  2.053  18.729 -4.955 2.663  -0.708 H9  VEP 40 
VEP H10 H10 H 0 1 N N N N N N 12.106 -1.995 21.938 3.405  -1.739 -1.715 H10 VEP 41 
VEP H11 H11 H 0 1 N N N N N N 7.911  -1.255 24.417 2.374  1.903  1.443  H11 VEP 42 
VEP H12 H12 H 0 1 N N N N N N 11.817 -0.535 26.240 6.665  -2.737 -0.121 H12 VEP 43 
VEP H13 H13 H 0 1 N N N N N N 13.606 -0.659 26.148 5.301  -2.505 1.000  H13 VEP 44 
VEP H14 H14 H 0 1 N N N N N N 12.711 0.327  24.942 4.993  -2.930 -0.701 H14 VEP 45 
VEP H15 H15 H 0 1 N N N N N N 11.748 -3.086 26.217 5.426  -1.256 -2.505 H15 VEP 46 
VEP H16 H16 H 0 1 N N N N N N 12.593 -3.965 24.898 6.043  0.361  -2.089 H16 VEP 47 
VEP H17 H17 H 0 1 N N N N N N 13.541 -3.060 26.126 7.098  -1.063 -1.924 H17 VEP 48 
VEP H18 H18 H 0 1 N N N N N N 9.054  2.808  24.990 -4.147 -1.525 0.569  H18 VEP 49 
VEP H19 H19 H 0 1 N N N N N N 10.335 2.000  24.025 -4.046 -1.501 -1.209 H19 VEP 50 
VEP H20 H20 H 0 1 N N N N N N 6.399  0.316  22.182 -0.017 1.229  -1.956 H20 VEP 51 
VEP H21 H21 H 0 1 N N N N N N 4.826  1.399  20.936 -3.326 0.807  -0.993 H21 VEP 52 
VEP H22 H22 H 0 1 N N N N N N 5.057  1.281  16.703 -4.122 4.967  -0.456 H22 VEP 53 
VEP H23 H23 H 0 1 N N N N N N 7.880  -0.769 18.939 -0.184 3.687  -0.743 H23 VEP 54 
VEP H24 H24 H 0 1 N N N N N N 6.927  -4.405 22.167 1.479  0.740  2.453  H24 VEP 55 
VEP H25 H25 H 0 1 N N N N N N 8.453  -3.670 21.569 1.304  2.510  2.392  H25 VEP 56 
VEP H26 H26 H 0 1 N N N N N N 7.581  -5.351 19.977 0.663  1.628  4.620  H26 VEP 57 
VEP H27 H27 H 0 1 N N N N N N 6.038  -4.439 19.857 -0.736 2.356  3.794  H27 VEP 58 
VEP H28 H28 H 0 1 N N N N N N 7.564  -3.705 19.259 -0.561 0.586  3.855  H28 VEP 59 
VEP H29 H29 H 0 1 N N N N N N 10.031 -1.483 25.632 4.683  1.079  1.221  H29 VEP 60 
VEP H30 H30 H 0 1 N N N N N N 14.684 -1.884 24.336 6.475  0.957  0.298  H30 VEP 61 
VEP H31 H31 H 0 1 N N N N N N 13.710 -2.713 23.075 6.167  -0.235 1.583  H31 VEP 62 
VEP H32 H32 H 0 1 N N N N N N 13.780 -0.919 23.120 7.530  -0.467 0.463  H32 VEP 63 
VEP H33 H33 H 0 1 N N N N N N 9.991  -1.777 20.711 1.094  -0.920 -1.503 H33 VEP 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VEP C12 N2  DOUB Y N 1  
VEP C12 C13 SING Y N 2  
VEP N2  C11 SING Y N 3  
VEP C13 C14 DOUB Y N 4  
VEP C11 C10 DOUB Y N 5  
VEP C   C1  SING N N 6  
VEP C14 C10 SING Y N 7  
VEP C10 C3  SING N N 8  
VEP O1  C4  DOUB N N 9  
VEP O   C2  DOUB N N 10 
VEP C1  C2  SING N N 11 
VEP C3  C4  SING N N 12 
VEP C3  N   SING N N 13 
VEP C2  N   SING N N 14 
VEP C4  N1  SING N N 15 
VEP N   C15 SING N N 16 
VEP C16 C15 DOUB Y N 17 
VEP C16 C17 SING Y N 18 
VEP C15 C20 SING Y N 19 
VEP C17 C18 DOUB Y N 20 
VEP N1  C5  SING N N 21 
VEP C5  C6  SING N N 22 
VEP C5  C9  SING N N 23 
VEP C6  C7  SING N N 24 
VEP C7  O2  SING N N 25 
VEP C23 C21 SING N N 26 
VEP C20 C19 DOUB Y N 27 
VEP C18 C19 SING Y N 28 
VEP C18 C21 SING N N 29 
VEP C9  C8  SING N N 30 
VEP C8  O2  SING N N 31 
VEP C21 C24 SING N N 32 
VEP C21 C22 SING N N 33 
VEP N1  H1  SING N N 34 
VEP C5  H2  SING N N 35 
VEP C6  H3  SING N N 36 
VEP C6  H4  SING N N 37 
VEP C7  H5  SING N N 38 
VEP C7  H6  SING N N 39 
VEP C8  H7  SING N N 40 
VEP C8  H8  SING N N 41 
VEP C13 H9  SING N N 42 
VEP C17 H10 SING N N 43 
VEP C20 H11 SING N N 44 
VEP C22 H12 SING N N 45 
VEP C22 H13 SING N N 46 
VEP C22 H14 SING N N 47 
VEP C24 H15 SING N N 48 
VEP C24 H16 SING N N 49 
VEP C24 H17 SING N N 50 
VEP C9  H18 SING N N 51 
VEP C9  H19 SING N N 52 
VEP C3  H20 SING N N 53 
VEP C14 H21 SING N N 54 
VEP C12 H22 SING N N 55 
VEP C11 H23 SING N N 56 
VEP C1  H24 SING N N 57 
VEP C1  H25 SING N N 58 
VEP C   H26 SING N N 59 
VEP C   H27 SING N N 60 
VEP C   H28 SING N N 61 
VEP C19 H29 SING N N 62 
VEP C23 H30 SING N N 63 
VEP C23 H31 SING N N 64 
VEP C23 H32 SING N N 65 
VEP C16 H33 SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VEP SMILES           ACDLabs              12.01 "N(C1CCOCC1)C(=O)C(c2cccnc2)N(c3ccc(cc3)C(C)(C)C)C(=O)CC"                                                                                                                         
VEP InChI            InChI                1.03  "InChI=1S/C25H33N3O3/c1-5-22(29)28(21-10-8-19(9-11-21)25(2,3)4)23(18-7-6-14-26-17-18)24(30)27-20-12-15-31-16-13-20/h6-11,14,17,20,23H,5,12-13,15-16H2,1-4H3,(H,27,30)/t23-/m1/s1" 
VEP InChIKey         InChI                1.03  RRENCBKXJJGAMC-HSZRJFAPSA-N                                                                                                                                                       
VEP SMILES_CANONICAL CACTVS               3.385 "CCC(=O)N([C@@H](C(=O)NC1CCOCC1)c2cccnc2)c3ccc(cc3)C(C)(C)C"                                                                                                                      
VEP SMILES           CACTVS               3.385 "CCC(=O)N([CH](C(=O)NC1CCOCC1)c2cccnc2)c3ccc(cc3)C(C)(C)C"                                                                                                                        
VEP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(c1ccc(cc1)C(C)(C)C)[C@H](c2cccnc2)C(=O)NC3CCOCC3"                                                                                                                       
VEP SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(c1ccc(cc1)C(C)(C)C)C(c2cccnc2)C(=O)NC3CCOCC3"                                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VEP "SYSTEMATIC NAME" ACDLabs              12.01 "N-(4-tert-butylphenyl)-N-[(1R)-2-[(oxan-4-yl)amino]-2-oxo-1-(pyridin-3-yl)ethyl]propanamide"                    
VEP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-(4-~{tert}-butylphenyl)-~{N}-[(1~{R})-2-(oxan-4-ylamino)-2-oxidanylidene-1-pyridin-3-yl-ethyl]propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VEP "Create component" 2020-08-05 RCSB 
VEP "Initial release"  2020-12-02 RCSB 
VEP "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            VEP 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
