data_V5P
#

_chem_comp.id                                   V5P
_chem_comp.name                                 lignostilbene
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H16 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "4,4'-[(E)-ethene-1,2-diyl]bis(2-methoxyphenol)"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-06-30
_chem_comp.pdbx_modified_date                   2021-05-07
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       272.296
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    V5P
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6XM8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V5P  C10   C1   C  0  1  Y  N  N  25.913  12.573  36.484  -1.898  -0.096  -0.005  C10   V5P   1  
V5P  C11   C2   C  0  1  Y  N  N  26.286  12.465  37.811  -2.126  -1.475  -0.013  C11   V5P   2  
V5P  C12   C3   C  0  1  Y  N  N  27.280  13.281  38.324  -3.417  -1.960  -0.018  C12   V5P   3  
V5P  C13   C4   C  0  1  Y  N  N  27.921  14.192  37.503  -4.491  -1.083  -0.016  C13   V5P   4  
V5P  C15   C5   C  0  1  Y  N  N  27.569  14.290  36.165  -4.272   0.293  -0.008  C15   V5P   5  
V5P  C02   C6   C  0  1  Y  N  N  21.271   8.997  33.514   4.491   1.083   0.016  C02   V5P   6  
V5P  C03   C7   C  0  1  Y  N  N  21.575   9.046  34.853   4.272  -0.293   0.008  C03   V5P   7  
V5P  C05   C8   C  0  1  N  N  N  21.451   7.876  36.938   5.030  -2.547  -0.002  C05   V5P   8  
V5P  C06   C9   C  0  1  Y  N  N  22.475   9.993  35.327   2.981  -0.788   0.002  C06   V5P   9  
V5P  C07   C10  C  0  1  Y  N  N  23.052  10.900  34.442   1.898   0.096   0.004  C07   V5P  10  
V5P  C08   C11  C  0  1  N  N  N  24.072  11.940  34.914   0.520  -0.425  -0.001  C08   V5P  11  
V5P  C09   C12  C  0  1  N  N  N  24.829  11.637  35.947  -0.520   0.425   0.001  C09   V5P  12  
V5P  C17   C13  C  0  1  N  N  N  29.586  14.956  35.187  -5.030   2.547   0.002  C17   V5P  13  
V5P  C18   C14  C  0  1  Y  N  N  26.573  13.470  35.649  -2.981   0.788  -0.009  C18   V5P  14  
V5P  C19   C15  C  0  1  Y  N  N  22.756  10.822  33.087   2.126   1.475   0.012  C19   V5P  15  
V5P  C20   C16  C  0  1  Y  N  N  21.854   9.878  32.622   3.417   1.960   0.018  C20   V5P  16  
V5P  O01   O1   O  0  1  N  N  N  20.352   8.030  33.094   5.761   1.567   0.027  O01   V5P  17  
V5P  O04   O2   O  0  1  N  N  N  20.918   8.107  35.665   5.328  -1.150   0.006  O04   V5P  18  
V5P  O14   O3   O  0  1  N  N  N  28.924  15.013  38.037  -5.761  -1.567  -0.021  O14   V5P  19  
V5P  O16   O4   O  0  1  N  N  N  28.221  15.211  35.340  -5.328   1.150  -0.006  O16   V5P  20  
V5P  H111  H1   H  0  0  N  N  N  25.800  11.742  38.449  -1.291  -2.160  -0.014  H111  V5P  21  
V5P  H121  H2   H  0  0  N  N  N  27.555  13.206  39.366  -3.591  -3.026  -0.024  H121  V5P  22  
V5P  H053  H3   H  0  0  N  N  N  20.842   7.124  37.460   5.959  -3.117  -0.003  H053  V5P  23  
V5P  H051  H4   H  0  0  N  N  N  22.483   7.509  36.842   4.449  -2.800   0.885  H051  V5P  24  
V5P  H052  H5   H  0  0  N  N  N  21.447   8.814  37.513   4.454  -2.791  -0.895  H052  V5P  25  
V5P  H061  H6   H  0  0  N  N  N  22.726  10.025  36.377   2.810  -1.854  -0.004  H061  V5P  26  
V5P  H081  H7   H  0  0  N  N  N  24.167  12.893  34.415   0.345  -1.491  -0.007  H081  V5P  27  
V5P  H091  H8   H  0  0  N  N  N  24.678  10.686  36.437  -0.345   1.491   0.007  H091  V5P  28  
V5P  H173  H9   H  0  0  N  N  N  30.030  15.717  34.529  -5.959   3.117   0.002  H173  V5P  29  
V5P  H171  H10  H  0  0  N  N  N  30.078  14.990  36.170  -4.453   2.791   0.894  H171  V5P  30  
V5P  H172  H11  H  0  0  N  N  N  29.725  13.960  34.742  -4.450   2.800  -0.886  H172  V5P  31  
V5P  H181  H12  H  0  0  N  N  N  26.312  13.528  34.603  -2.810   1.854  -0.002  H181  V5P  32  
V5P  H191  H13  H  0  0  N  N  N  23.231  11.500  32.393   1.291   2.160   0.014  H191  V5P  33  
V5P  H201  H14  H  0  0  N  N  N  21.608   9.831  31.571   3.591   3.026   0.025  H201  V5P  34  
V5P  H011  H15  H  0  0  N  N  N  20.062   7.522  33.842   6.135   1.711  -0.853  H011  V5P  35  
V5P  H141  H16  H  0  0  N  N  N  29.037  14.816  38.959  -6.131  -1.712   0.860  H141  V5P  36  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V5P  C20  C19   DOUB  Y  N   1  
V5P  C20  C02   SING  Y  N   2  
V5P  C19  C07   SING  Y  N   3  
V5P  O01  C02   SING  N  N   4  
V5P  C02  C03   DOUB  Y  N   5  
V5P  C07  C08   SING  N  N   6  
V5P  C07  C06   DOUB  Y  N   7  
V5P  C03  C06   SING  Y  N   8  
V5P  C03  O04   SING  N  N   9  
V5P  C08  C09   DOUB  N  E  10  
V5P  C17  O16   SING  N  N  11  
V5P  O16  C15   SING  N  N  12  
V5P  C18  C15   DOUB  Y  N  13  
V5P  C18  C10   SING  Y  N  14  
V5P  O04  C05   SING  N  N  15  
V5P  C09  C10   SING  N  N  16  
V5P  C15  C13   SING  Y  N  17  
V5P  C10  C11   DOUB  Y  N  18  
V5P  C13  O14   SING  N  N  19  
V5P  C13  C12   DOUB  Y  N  20  
V5P  C11  C12   SING  Y  N  21  
V5P  C11  H111  SING  N  N  22  
V5P  C12  H121  SING  N  N  23  
V5P  C05  H053  SING  N  N  24  
V5P  C05  H051  SING  N  N  25  
V5P  C05  H052  SING  N  N  26  
V5P  C06  H061  SING  N  N  27  
V5P  C08  H081  SING  N  N  28  
V5P  C09  H091  SING  N  N  29  
V5P  C17  H173  SING  N  N  30  
V5P  C17  H171  SING  N  N  31  
V5P  C17  H172  SING  N  N  32  
V5P  C18  H181  SING  N  N  33  
V5P  C19  H191  SING  N  N  34  
V5P  C20  H201  SING  N  N  35  
V5P  O01  H011  SING  N  N  36  
V5P  O14  H141  SING  N  N  37  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V5P  SMILES            ACDLabs               12.01  "c1(ccc(O)c(c1)OC)\C=C\c2cc(c(cc2)O)OC"  
V5P  InChI             InChI                 1.03   "InChI=1S/C16H16O4/c1-19-15-9-11(5-7-13(15)17)3-4-12-6-8-14(18)16(10-12)20-2/h3-10,17-18H,1-2H3/b4-3+"  
V5P  InChIKey          InChI                 1.03   KQPXJFAYGYIGRU-ONEGZZNKSA-N  
V5P  SMILES_CANONICAL  CACTVS                3.385  "COc1cc(ccc1O)\C=C\c2ccc(O)c(OC)c2"  
V5P  SMILES            CACTVS                3.385  "COc1cc(ccc1O)C=Cc2ccc(O)c(OC)c2"  
V5P  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "COc1cc(ccc1O)/C=C/c2ccc(c(c2)OC)O"  
V5P  SMILES            "OpenEye OEToolkits"  2.0.7  "COc1cc(ccc1O)C=Cc2ccc(c(c2)OC)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
V5P  "SYSTEMATIC NAME"  ACDLabs               12.01  "4,4'-[(E)-ethene-1,2-diyl]bis(2-methoxyphenol)"  
V5P  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "2-methoxy-4-[(~{E})-2-(3-methoxy-4-oxidanyl-phenyl)ethenyl]phenol"  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     V5P
_pdbx_chem_comp_synonyms.name        "4,4'-[(E)-ethene-1,2-diyl]bis(2-methoxyphenol)"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V5P  "Create component"  2020-06-30  RCSB  
V5P  "Modify synonyms"   2021-03-13  RCSB  
V5P  "Initial release"   2021-05-12  RCSB  
##
