data_SVP
#

_chem_comp.id                                   SVP
_chem_comp.name                                 "chloro{di-tert-butyl[2-({5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)ethyl]-lambda~5~-phosphanyl}(1-phenylprop-1-ene-1,3-diyl-kappa~2~C~1~,C~3~)palladium"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C29 H46 Cl N3 O2 P Pd S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2015-07-23
_chem_comp.pdbx_modified_date                   2015-10-30
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       673.606
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SVP
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  Y
_chem_comp.pdbx_model_coordinates_db_code       5CSE
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SVP  C01  C1   C   0  1  N  N  S   8.328  12.611  32.761  ?  ?  ?  C01  SVP   1  
SVP  C02  C2   C   0  1  N  N  N   9.300  12.634  33.969  ?  ?  ?  C02  SVP   2  
SVP  C03  C3   C   0  1  N  N  N   9.393  11.221  34.617  ?  ?  ?  C03  SVP   3  
SVP  C04  C4   C   0  1  N  N  N  10.507  11.132  35.681  ?  ?  ?  C04  SVP   4  
SVP  C05  C5   C   0  1  N  N  N  10.590   9.714  36.285  ?  ?  ?  C05  SVP   5  
SVP  C06  C6   C   0  1  N  N  N   9.481   9.401  37.267  ?  ?  ?  C06  SVP   6  
SVP  O07  O1   O   0  1  N  N  N   8.911  10.247  37.926  ?  ?  ?  O07  SVP   7  
SVP  N08  N1   N   0  1  N  N  N   9.168   8.093  37.370  ?  ?  ?  N08  SVP   8  
SVP  C09  C7   C   0  1  N  N  N   8.122   7.595  38.277  ?  ?  ?  C09  SVP   9  
SVP  C10  C8   C   0  1  N  N  N   6.723   8.085  37.849  ?  ?  ?  C10  SVP  10  
SVP  P11  P1   P   0  1  N  N  N   5.318   7.679  38.952  ?  ?  ?  P11  SVP  11  
SVP  PD   PD1  PD  0  0  N  N  N   5.829   5.863  40.310  ?  ?  ?  PD   SVP  12  
SVP  CL   CL1  CL  0  0  N  N  N   7.311   6.612  42.006  ?  ?  ?  CL   SVP  13  
SVP  C23  C9   C   0  1  N  N  N   5.135   8.959  40.297  ?  ?  ?  C23  SVP  14  
SVP  C24  C10  C   0  1  N  N  N   4.484   8.314  41.550  ?  ?  ?  C24  SVP  15  
SVP  C25  C11  C   0  1  N  N  N   4.220  10.158  39.956  ?  ?  ?  C25  SVP  16  
SVP  C26  C12  C   0  1  N  N  N   6.481   9.548  40.766  ?  ?  ?  C26  SVP  17  
SVP  C27  C13  C   0  1  N  N  N   3.835   7.408  37.871  ?  ?  ?  C27  SVP  18  
SVP  C28  C14  C   0  1  N  N  N   3.612   8.664  36.996  ?  ?  ?  C28  SVP  19  
SVP  C29  C15  C   0  1  N  N  N   4.005   6.227  36.881  ?  ?  ?  C29  SVP  20  
SVP  C30  C16  C   0  1  N  N  N   2.542   7.121  38.680  ?  ?  ?  C30  SVP  21  
SVP  C31  C17  C   0  1  N  N  S   7.799  13.997  32.328  ?  ?  ?  C31  SVP  22  
SVP  N32  N2   N   0  1  N  N  N   8.865  14.998  32.288  ?  ?  ?  N32  SVP  23  
SVP  C33  C18  C   0  1  N  N  N   9.105  15.485  31.060  ?  ?  ?  C33  SVP  24  
SVP  O34  O2   O   0  1  N  N  N   9.937  16.320  30.786  ?  ?  ?  O34  SVP  25  
SVP  N35  N3   N   0  1  N  N  N   8.241  14.899  30.204  ?  ?  ?  N35  SVP  26  
SVP  C36  C19  C   0  1  N  N  R   7.366  13.915  30.844  ?  ?  ?  C36  SVP  27  
SVP  C37  C20  C   0  1  N  N  N   7.684  12.492  30.338  ?  ?  ?  C37  SVP  28  
SVP  S38  S1   S   0  1  N  N  N   9.096  11.861  31.299  ?  ?  ?  S38  SVP  29  
SVP  H1   H1   H   0  1  N  N  N   7.471  11.969  33.012  ?  ?  ?  H1   SVP  30  
SVP  H2   H2   H   0  1  N  N  N  10.299  12.942  33.625  ?  ?  ?  H2   SVP  31  
SVP  H3   H3   H   0  1  N  N  N   8.932  13.352  34.717  ?  ?  ?  H3   SVP  32  
SVP  H4   H4   H   0  1  N  N  N   8.430  10.987  35.094  ?  ?  ?  H4   SVP  33  
SVP  H5   H5   H   0  1  N  N  N   9.599  10.484  33.827  ?  ?  ?  H5   SVP  34  
SVP  H6   H6   H   0  1  N  N  N  11.471  11.380  35.213  ?  ?  ?  H6   SVP  35  
SVP  H7   H7   H   0  1  N  N  N  10.294  11.852  36.485  ?  ?  ?  H7   SVP  36  
SVP  H8   H8   H   0  1  N  N  N  10.542   8.984  35.464  ?  ?  ?  H8   SVP  37  
SVP  H9   H9   H   0  1  N  N  N  11.553   9.615  36.807  ?  ?  ?  H9   SVP  38  
SVP  H10  H10  H   0  1  N  N  N   9.667   7.435  36.807  ?  ?  ?  H10  SVP  39  
SVP  H11  H11  H   0  1  N  N  N   8.134   6.495  38.267  ?  ?  ?  H11  SVP  40  
SVP  H12  H12  H   0  1  N  N  N   8.331   7.955  39.295  ?  ?  ?  H12  SVP  41  
SVP  H13  H13  H   0  1  N  N  N   6.769   9.181  37.762  ?  ?  ?  H13  SVP  42  
SVP  H14  H14  H   0  1  N  N  N   6.507   7.647  36.863  ?  ?  ?  H14  SVP  43  
SVP  H15  H15  H   0  1  N  N  N   4.378   9.072  42.340  ?  ?  ?  H15  SVP  44  
SVP  H16  H16  H   0  1  N  N  N   3.492   7.919  41.285  ?  ?  ?  H16  SVP  45  
SVP  H17  H17  H   0  1  N  N  N   5.121   7.493  41.912  ?  ?  ?  H17  SVP  46  
SVP  H18  H18  H   0  1  N  N  N   4.183  10.847  40.813  ?  ?  ?  H18  SVP  47  
SVP  H19  H19  H   0  1  N  N  N   4.620  10.686  39.078  ?  ?  ?  H19  SVP  48  
SVP  H20  H20  H   0  1  N  N  N   3.206   9.794  39.735  ?  ?  ?  H20  SVP  49  
SVP  H21  H21  H   0  1  N  N  N   6.301  10.292  41.556  ?  ?  ?  H21  SVP  50  
SVP  H22  H22  H   0  1  N  N  N   7.116   8.741  41.160  ?  ?  ?  H22  SVP  51  
SVP  H23  H23  H   0  1  N  N  N   6.986  10.030  39.916  ?  ?  ?  H23  SVP  52  
SVP  H24  H24  H   0  1  N  N  N   3.483   9.544  37.643  ?  ?  ?  H24  SVP  53  
SVP  H25  H25  H   0  1  N  N  N   4.483   8.814  36.342  ?  ?  ?  H25  SVP  54  
SVP  H26  H26  H   0  1  N  N  N   2.711   8.527  36.381  ?  ?  ?  H26  SVP  55  
SVP  H27  H27  H   0  1  N  N  N   4.168   5.296  37.444  ?  ?  ?  H27  SVP  56  
SVP  H28  H28  H   0  1  N  N  N   3.097   6.130  36.267  ?  ?  ?  H28  SVP  57  
SVP  H29  H29  H   0  1  N  N  N   4.870   6.417  36.229  ?  ?  ?  H29  SVP  58  
SVP  H30  H30  H   0  1  N  N  N   2.373   7.933  39.402  ?  ?  ?  H30  SVP  59  
SVP  H31  H31  H   0  1  N  N  N   1.686   7.058  37.992  ?  ?  ?  H31  SVP  60  
SVP  H32  H32  H   0  1  N  N  N   2.651   6.168  39.219  ?  ?  ?  H32  SVP  61  
SVP  H33  H33  H   0  1  N  N  N   6.959  14.312  32.964  ?  ?  ?  H33  SVP  62  
SVP  H34  H34  H   0  1  N  N  N   9.368  15.292  33.100  ?  ?  ?  H34  SVP  63  
SVP  H35  H35  H   0  1  N  N  N   8.202  15.116  29.229  ?  ?  ?  H35  SVP  64  
SVP  H36  H36  H   0  1  N  N  N   6.299  14.155  30.724  ?  ?  ?  H36  SVP  65  
SVP  H37  H37  H   0  1  N  N  N   6.811  11.839  30.484  ?  ?  ?  H37  SVP  66  
SVP  H38  H38  H   0  1  N  N  N   7.943  12.524  29.269  ?  ?  ?  H38  SVP  67  
SVP  C1   C21  C   0  1  N  N  N       ?       ?       ?  ?  ?  ?  C1   SVP  68  
SVP  C2   C22  C   0  1  N  N  N       ?       ?       ?  ?  ?  ?  C2   SVP  69  
SVP  C3   C23  C   0  1  N  N  N       ?       ?       ?  ?  ?  ?  C3   SVP  70  
SVP  C4   C24  C   0  1  Y  N  N       ?       ?       ?  ?  ?  ?  C4   SVP  71  
SVP  C5   C25  C   0  1  Y  N  N       ?       ?       ?  ?  ?  ?  C5   SVP  72  
SVP  C6   C26  C   0  1  Y  N  N       ?       ?       ?  ?  ?  ?  C6   SVP  73  
SVP  C8   C27  C   0  1  Y  N  N       ?       ?       ?  ?  ?  ?  C8   SVP  74  
SVP  C9   C28  C   0  1  Y  N  N       ?       ?       ?  ?  ?  ?  C9   SVP  75  
SVP  C11  C29  C   0  1  Y  N  N       ?       ?       ?  ?  ?  ?  C11  SVP  76  
SVP  H39  H39  H   0  1  N  N  N       ?       ?       ?  ?  ?  ?  H39  SVP  77  
SVP  H40  H40  H   0  1  N  N  N       ?       ?       ?  ?  ?  ?  H40  SVP  78  
SVP  H41  H41  H   0  1  N  N  N       ?       ?       ?  ?  ?  ?  H41  SVP  79  
SVP  H42  H42  H   0  1  N  N  N       ?       ?       ?  ?  ?  ?  H42  SVP  80  
SVP  H43  H43  H   0  1  N  N  N       ?       ?       ?  ?  ?  ?  H43  SVP  81  
SVP  H44  H44  H   0  1  N  N  N       ?       ?       ?  ?  ?  ?  H44  SVP  82  
SVP  H45  H45  H   0  1  N  N  N       ?       ?       ?  ?  ?  ?  H45  SVP  83  
SVP  H46  H46  H   0  1  N  N  N       ?       ?       ?  ?  ?  ?  H46  SVP  84  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SVP  N35  C36  SING  N  N   1  
SVP  N35  C33  SING  N  N   2  
SVP  C37  C36  SING  N  N   3  
SVP  C37  S38  SING  N  N   4  
SVP  O34  C33  DOUB  N  N   5  
SVP  C36  C31  SING  N  N   6  
SVP  C33  N32  SING  N  N   7  
SVP  S38  C01  SING  N  N   8  
SVP  N32  C31  SING  N  N   9  
SVP  C31  C01  SING  N  N  10  
SVP  C01  C02  SING  N  N  11  
SVP  C02  C03  SING  N  N  12  
SVP  C03  C04  SING  N  N  13  
SVP  C04  C05  SING  N  N  14  
SVP  C05  C06  SING  N  N  15  
SVP  C29  C27  SING  N  N  16  
SVP  C28  C27  SING  N  N  17  
SVP  C06  N08  SING  N  N  18  
SVP  C06  O07  DOUB  N  N  19  
SVP  N08  C09  SING  N  N  20  
SVP  C10  C09  SING  N  N  21  
SVP  C10  P11  SING  N  N  22  
SVP  C27  C30  SING  N  N  23  
SVP  C27  P11  SING  N  N  24  
SVP  P11  C23  SING  N  N  25  
SVP  P11  PD   SING  N  N  26  
SVP  C25  C23  SING  N  N  27  
SVP  C23  C26  SING  N  N  28  
SVP  C23  C24  SING  N  N  29  
SVP  PD   CL   SING  N  N  30  
SVP  C01  H1   SING  N  N  31  
SVP  C02  H2   SING  N  N  32  
SVP  C02  H3   SING  N  N  33  
SVP  C03  H4   SING  N  N  34  
SVP  C03  H5   SING  N  N  35  
SVP  C04  H6   SING  N  N  36  
SVP  C04  H7   SING  N  N  37  
SVP  C05  H8   SING  N  N  38  
SVP  C05  H9   SING  N  N  39  
SVP  N08  H10  SING  N  N  40  
SVP  C09  H11  SING  N  N  41  
SVP  C09  H12  SING  N  N  42  
SVP  C10  H13  SING  N  N  43  
SVP  C10  H14  SING  N  N  44  
SVP  C24  H15  SING  N  N  45  
SVP  C24  H16  SING  N  N  46  
SVP  C24  H17  SING  N  N  47  
SVP  C25  H18  SING  N  N  48  
SVP  C25  H19  SING  N  N  49  
SVP  C25  H20  SING  N  N  50  
SVP  C26  H21  SING  N  N  51  
SVP  C26  H22  SING  N  N  52  
SVP  C26  H23  SING  N  N  53  
SVP  C28  H24  SING  N  N  54  
SVP  C28  H25  SING  N  N  55  
SVP  C28  H26  SING  N  N  56  
SVP  C29  H27  SING  N  N  57  
SVP  C29  H28  SING  N  N  58  
SVP  C29  H29  SING  N  N  59  
SVP  C30  H30  SING  N  N  60  
SVP  C30  H31  SING  N  N  61  
SVP  C30  H32  SING  N  N  62  
SVP  C31  H33  SING  N  N  63  
SVP  N32  H34  SING  N  N  64  
SVP  N35  H35  SING  N  N  65  
SVP  C36  H36  SING  N  N  66  
SVP  C37  H37  SING  N  N  67  
SVP  C37  H38  SING  N  N  68  
SVP  C1   C2   SING  N  N  69  
SVP  C2   C3   DOUB  N  N  70  
SVP  C3   C4   SING  N  N  71  
SVP  C4   C5   DOUB  Y  N  72  
SVP  C4   C6   SING  Y  N  73  
SVP  C6   C11  DOUB  Y  N  74  
SVP  C5   C8   SING  Y  N  75  
SVP  C8   C9   DOUB  Y  N  76  
SVP  C9   C11  SING  Y  N  77  
SVP  PD   C1   SING  N  N  78  
SVP  PD   C3   SING  N  N  79  
SVP  C1   H39  SING  N  N  80  
SVP  C1   H40  SING  N  N  81  
SVP  C2   H41  SING  N  N  82  
SVP  C5   H42  SING  N  N  83  
SVP  C6   H43  SING  N  N  84  
SVP  C8   H44  SING  N  N  85  
SVP  C9   H45  SING  N  N  86  
SVP  C11  H46  SING  N  N  87  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SVP  SMILES            ACDLabs               12.01  "C4(CCCCC(NCCP(C(C)(C)C)([Pd]1(Cl)CC=C1c2ccccc2)C(C)(C)C)=O)C3NC(=O)NC3CS4"  
SVP  InChI             InChI                 1.03   "InChI=1S/C20H38N3O2PS.C9H8.ClH.Pd/c1-19(2,3)26(20(4,5)6)12-11-21-16(24)10-8-7-9-15-17-14(13-27-15)22-18(25)23-17;1-2-6-9-7-4-3-5-8-9;;/h14-15,17H,7-13H2,1-6H3,(H,21,24)(H2,22,23,25);2-5,7-8H,1H2;1H;/t14-,15-,17-;;;/m0.../s1"  
SVP  InChIKey          InChI                 1.03   VFIKYJJBNYQPLX-CRZSKOOBSA-N  
SVP  SMILES_CANONICAL  CACTVS                3.385  "CC(C)(C)P(CCNC(=O)CCCC[C@@H]1SC[C@@H]2NC(=O)N[C@H]12)C(C)(C)C.Cl[Pd]3CC=C3c4ccccc4"  
SVP  SMILES            CACTVS                3.385  "CC(C)(C)P(CCNC(=O)CCCC[CH]1SC[CH]2NC(=O)N[CH]12)C(C)(C)C.Cl[Pd]3CC=C3c4ccccc4"  
SVP  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "CC(C)(C)[P](CCNC(=O)CCCC[C@H]1[C@@H]2[C@H](CS1)NC(=O)N2)(C(C)(C)C)[Pd]3(CC=C3c4ccccc4)Cl"  
SVP  SMILES            "OpenEye OEToolkits"  1.9.2  "CC(C)(C)[P](CCNC(=O)CCCCC1C2C(CS1)NC(=O)N2)(C(C)(C)C)[Pd]3(CC=C3c4ccccc4)Cl"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SVP  "SYSTEMATIC NAME"  ACDLabs               12.01  "chloro{di-tert-butyl[2-({5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)ethyl]-lambda~5~-phosphanyl}(1-phenylprop-1-ene-1,3-diyl-kappa~2~C~1~,C~3~)palladium"  
SVP  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "5-[(3aS,4S,6aR)-2-oxidanylidene-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-4-yl]-N-[2-[ditert-butyl-(1-chloranyl-2-phenyl-1$l^{4}-palladacyclobut-2-en-1-yl)-$l^{4}-phosphanyl]ethyl]pentanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SVP  "Create component"  2015-07-23  EBI   
SVP  "Initial release"   2015-11-04  RCSB  
##
