data_S5P
#

_chem_comp.id                                   S5P
_chem_comp.name                                 "6-sulfanyluridine-5'-phosphate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C9 H13 N2 O9 P S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "6-mercaptouridine-5'-monophosphate"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2008-10-23
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       356.246
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    S5P
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3EX5
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S5P  O4      O4      O  0  1  N  N  N  2.769   7.501  21.563  -4.652   3.129  -0.461  O4      S5P   1  
S5P  C4      C4      C  0  1  N  N  N  3.165   7.673  22.737  -3.861   2.215  -0.297  C4      S5P   2  
S5P  C5      C5      C  0  1  N  N  N  3.552   6.564  23.518  -4.167   1.166   0.583  C5      S5P   3  
S5P  C6      C6      C  0  1  N  N  N  4.012   6.765  24.854  -3.263   0.153   0.748  C6      S5P   4  
S5P  S22     S22     S  0  1  N  N  N  4.015   5.376  25.999  -3.614  -1.181   1.845  S22     S5P   5  
S5P  N3      N3      N  0  1  N  N  N  3.124   8.923  23.298  -2.691   2.204  -0.965  N3      S5P   6  
S5P  C2      C2      C  0  1  N  N  N  3.580   9.115  24.620  -1.813   1.200  -0.791  C2      S5P   7  
S5P  O2      O2      O  0  1  N  N  N  3.595  10.293  25.121  -0.763   1.210  -1.404  O2      S5P   8  
S5P  N1      N1      N  0  1  N  N  N  4.100   8.030  25.351  -2.079   0.185   0.051  N1      S5P   9  
S5P  "C1'"   "C1'"   C  0  1  N  N  R  4.654   8.242  26.751  -1.103  -0.895   0.221  "C1'"   S5P  10  
S5P  "O4'"   "O4'"   O  0  1  N  N  N  3.592   8.665  27.653   0.213  -0.357   0.469  "O4'"   S5P  11  
S5P  "C2'"   "C2'"   C  0  1  N  N  R  5.765   9.319  26.769  -0.928  -1.686  -1.100  "C2'"   S5P  12  
S5P  "O2'"   "O2'"   O  0  1  N  N  N  7.133   8.798  26.652  -1.907  -2.721  -1.209  "O2'"   S5P  13  
S5P  "C3'"   "C3'"   C  0  1  N  N  S  5.562   9.901  28.175   0.491  -2.283  -0.935  "C3'"   S5P  14  
S5P  "O3'"   "O3'"   O  0  1  N  N  N  6.387   9.167  28.999   0.415  -3.632  -0.470  "O3'"   S5P  15  
S5P  "C4'"   "C4'"   C  0  1  N  N  R  4.093   9.683  28.534   1.158  -1.383   0.123  "C4'"   S5P  16  
S5P  "C5'"   "C5'"   C  0  1  N  N  N  3.305  10.956  28.237   2.425  -0.750  -0.455  "C5'"   S5P  17  
S5P  "O5'"   "O5'"   O  0  1  N  N  N  3.681  11.996  29.087   3.090   0.001   0.562  "O5'"   S5P  18  
S5P  P       P       P  0  1  N  N  N  2.797  13.367  29.165   4.462   0.803   0.305  P       S5P  19  
S5P  O3P     O3P     O  0  1  N  N  N  3.621  14.101  30.213   4.990   1.422   1.694  O3P     S5P  20  
S5P  O1P     O1P     O  0  1  N  N  N  2.810  14.053  27.874   5.479  -0.122  -0.242  O1P     S5P  21  
S5P  O2P     O2P     O  0  1  N  N  N  1.462  13.019  29.606   4.198   1.994  -0.747  O2P     S5P  22  
S5P  HN3     HN3     H  0  1  N  N  N  2.772   9.697  22.772  -2.480   2.926  -1.577  HN3     S5P  23  
S5P  "H1'"   "H1'"   H  0  1  N  N  N  5.080   7.282  27.079  -1.407  -1.561   1.029  "H1'"   S5P  24  
S5P  "H2'"   "H2'"   H  0  1  N  N  N  5.681  10.012  25.919  -0.971  -1.019  -1.961  "H2'"   S5P  25  
S5P  "HO2'"  "HO2'"  H  0  0  N  N  N  7.352   8.685  25.734  -1.838  -3.243  -2.020  "HO2'"  S5P  26  
S5P  "H3'"   "H3'"   H  0  1  N  N  N  5.796  10.972  28.259   1.038  -2.233  -1.877  "H3'"   S5P  27  
S5P  "HO3'"  "HO3'"  H  0  0  N  N  N  7.210   8.998  28.555  -0.048  -4.230  -1.072  "HO3'"  S5P  28  
S5P  "H4'"   "H4'"   H  0  1  N  N  N  3.995   9.410  29.595   1.406  -1.972   1.007  "H4'"   S5P  29  
S5P  "H5'"   "H5'"   H  0  1  N  N  N  3.498  11.259  27.197   3.089  -1.534  -0.820  "H5'"   S5P  30  
S5P  "H5'A"  "H5'A"  H  0  0  N  N  N  2.236  10.748  28.394   2.157  -0.089  -1.279  "H5'A"  S5P  31  
S5P  HO3P    HO3P    H  0  0  N  N  N  4.497  14.254  29.878   5.815   1.920   1.614  HO3P    S5P  32  
S5P  HO2P    HO2P    H  0  0  N  N  N  1.451  12.943  30.553   3.541   2.639  -0.453  HO2P    S5P  33  
S5P  H12     H12     H  0  1  N  N  N  4.016   4.262  25.329  -4.887  -0.790   2.308  H12     S5P  34  
S5P  H5      H5      H  0  1  N  N  N  3.500   5.567  23.107  -5.103   1.159   1.122  H5      S5P  35  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S5P  O4     C4      DOUB  N  N   1  
S5P  C4     N3      SING  N  N   2  
S5P  C4     C5      SING  N  N   3  
S5P  C5     C6      DOUB  N  N   4  
S5P  C5     H5      SING  N  N   5  
S5P  C6     N1      SING  N  N   6  
S5P  C6     S22     SING  N  N   7  
S5P  S22    H12     SING  N  N   8  
S5P  N3     C2      SING  N  N   9  
S5P  N3     HN3     SING  N  N  10  
S5P  C2     O2      DOUB  N  N  11  
S5P  C2     N1      SING  N  N  12  
S5P  N1     "C1'"   SING  N  N  13  
S5P  "C1'"  "C2'"   SING  N  N  14  
S5P  "C1'"  "O4'"   SING  N  N  15  
S5P  "C1'"  "H1'"   SING  N  N  16  
S5P  "O4'"  "C4'"   SING  N  N  17  
S5P  "C2'"  "C3'"   SING  N  N  18  
S5P  "C2'"  "H2'"   SING  N  N  19  
S5P  "O2'"  "C2'"   SING  N  N  20  
S5P  "O2'"  "HO2'"  SING  N  N  21  
S5P  "C3'"  "C4'"   SING  N  N  22  
S5P  "C3'"  "O3'"   SING  N  N  23  
S5P  "C3'"  "H3'"   SING  N  N  24  
S5P  "O3'"  "HO3'"  SING  N  N  25  
S5P  "C4'"  "H4'"   SING  N  N  26  
S5P  "C5'"  "C4'"   SING  N  N  27  
S5P  "C5'"  "O5'"   SING  N  N  28  
S5P  "C5'"  "H5'"   SING  N  N  29  
S5P  "C5'"  "H5'A"  SING  N  N  30  
S5P  "O5'"  P       SING  N  N  31  
S5P  P      O2P     SING  N  N  32  
S5P  P      O3P     SING  N  N  33  
S5P  O3P    HO3P    SING  N  N  34  
S5P  O1P    P       DOUB  N  N  35  
S5P  O2P    HO2P    SING  N  N  36  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S5P  SMILES            ACDLabs               10.04  "O=C1NC(=O)N(C(S)=C1)C2OC(C(O)C2O)COP(=O)(O)O"  
S5P  SMILES_CANONICAL  CACTVS                3.341  "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C(=CC(=O)NC2=O)S"  
S5P  SMILES            CACTVS                3.341  "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C(=CC(=O)NC2=O)S"  
S5P  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1=C(N(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)S"  
S5P  SMILES            "OpenEye OEToolkits"  1.5.0  "C1=C(N(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)O)S"  
S5P  InChI             InChI                 1.03   "InChI=1S/C9H13N2O9PS/c12-4-1-5(22)11(9(15)10-4)8-7(14)6(13)3(20-8)2-19-21(16,17)18/h1,3,6-8,13-14,22H,2H2,(H,10,12,15)(H2,16,17,18)/t3-,6-,7-,8-/m1/s1"  
S5P  InChIKey          InChI                 1.03   VNOFOHWXLQGLEX-YXZULKJRSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
S5P  "SYSTEMATIC NAME"  ACDLabs               10.04  "6-sulfanyluridine 5'-(dihydrogen phosphate)"  
S5P  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3S,4R,5R)-5-(2,4-dioxo-6-sulfanyl-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S5P  "Create component"   2008-10-23  RCSB  
S5P  "Modify descriptor"  2011-06-04  RCSB  
S5P  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     S5P
_pdbx_chem_comp_synonyms.name        "6-mercaptouridine-5'-monophosphate"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
