data_R1P
#

_chem_comp.id                                   R1P
_chem_comp.name                                 1-O-phosphono-alpha-D-ribofuranose
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C5 H11 O8 P"
_chem_comp.mon_nstd_parent_comp_id              RIB
_chem_comp.pdbx_synonyms                        "RIBOSE-1-PHOSPHATE; 1-O-phosphono-alpha-D-ribose; 1-O-phosphono-D-ribose; 1-O-phosphono-ribose"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        RDP
_chem_comp.formula_weight                       230.110
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    R1P
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1A9T
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  R1P  RIBOSE-1-PHOSPHATE            PDB  ?  
2  R1P  1-O-phosphono-alpha-D-ribose  PDB  ?  
3  R1P  1-O-phosphono-D-ribose        PDB  ?  
4  R1P  1-O-phosphono-ribose          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
R1P  C5    "C5'"   C  0  1  N  N  N  21.670  90.619  77.110   1.695  -0.423   2.674  C5    R1P   1  
R1P  O5    "O5'"   O  0  1  N  N  N  21.652  91.899  77.885   2.859   0.374   2.453  O5    R1P   2  
R1P  C4    "C4'"   C  0  1  N  N  R  20.431  89.888  76.752   0.473   0.283   2.084  C4    R1P   3  
R1P  O4    "O4'"   O  0  1  N  N  N  19.665  90.863  75.884   0.639   0.442   0.670  O4    R1P   4  
R1P  C1    "C1'"   C  0  1  N  N  R  19.166  90.354  74.642  -0.389  -0.276  -0.028  C1    R1P   5  
R1P  C2    "C2'"   C  0  1  N  N  R  20.099  89.019  74.517  -1.562  -0.385   0.978  C2    R1P   6  
R1P  O2    "O2'"   O  0  1  N  N  N  19.488  88.008  73.702  -2.337   0.815   0.997  O2    R1P   7  
R1P  C3    "C3'"   C  0  1  N  N  S  20.417  88.545  75.975  -0.789  -0.574   2.314  C3    R1P   8  
R1P  O3    "O3'"   O  0  1  N  N  N  19.366  87.658  76.395  -1.553  -0.081   3.417  O3    R1P   9  
R1P  O1    "O1'"   O  0  1  N  N  N  17.671  89.663  74.959  -0.796   0.446  -1.191  O1    R1P  10  
R1P  P     P       P  0  1  N  N  N  16.464  89.647  73.721   0.118  -0.076  -2.408  P     R1P  11  
R1P  O1P   O1P     O  0  1  N  N  N  15.150  89.010  74.146  -0.089  -1.529  -2.593  O1P   R1P  12  
R1P  O2P   O2P     O  0  1  N  N  N  16.505  91.144  73.508  -0.289   0.700  -3.758  O2P   R1P  13  
R1P  O3P   O3P     O  0  1  N  N  N  17.158  89.048  72.525   1.668   0.206  -2.074  O3P   R1P  14  
R1P  H51   "H5'1"  H  0  1  N  N  N  22.236  90.803  76.167   1.822  -1.392   2.192  H51   R1P  15  
R1P  H52   "H5'2"  H  0  1  N  N  N  22.336  89.907  77.650   1.550  -0.566   3.745  H52   R1P  16  
R1P  HO5   "HO5'"  H  0  1  N  Y  N  22.446  92.367  78.114   3.605  -0.105   2.839  HO5   R1P  17  
R1P  H4    "H4'"   H  0  1  N  N  N  20.047  89.563  77.747   0.348   1.259   2.554  H4    R1P  18  
R1P  H1    "H1'"   H  0  1  N  N  N  19.142  91.096  73.810  -0.035  -1.269  -0.305  H1    R1P  19  
R1P  H2    "H2'"   H  0  1  N  N  N  21.053  89.247  73.988  -2.188  -1.250   0.760  H2    R1P  20  
R1P  HO2   "HO2'"  H  0  1  N  Y  N  20.030  87.231  73.629  -2.698   0.928   0.108  HO2   R1P  21  
R1P  H3    "H3'"   H  0  1  N  N  N  21.366  87.978  76.117  -0.524  -1.620   2.464  H3    R1P  22  
R1P  HO3   "HO3'"  H  0  1  N  Y  N  19.357  86.835  75.919  -2.366  -0.603   3.448  HO3   R1P  23  
R1P  HOP2  HOP2    H  0  0  N  N  N  15.841  91.135  72.827   0.281   0.359  -4.460  HOP2  R1P  24  
R1P  HOP3  HOP3    H  0  0  N  N  N  16.494  89.039  71.844   1.760   1.161  -1.961  HOP3  R1P  25  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
R1P  C5   O5    SING  N  N   1  
R1P  C5   C4    SING  N  N   2  
R1P  C5   H51   SING  N  N   3  
R1P  C5   H52   SING  N  N   4  
R1P  O5   HO5   SING  N  N   5  
R1P  C4   O4    SING  N  N   6  
R1P  C4   C3    SING  N  N   7  
R1P  C4   H4    SING  N  N   8  
R1P  O4   C1    SING  N  N   9  
R1P  C1   C2    SING  N  N  10  
R1P  C1   O1    SING  N  N  11  
R1P  C1   H1    SING  N  N  12  
R1P  C2   O2    SING  N  N  13  
R1P  C2   C3    SING  N  N  14  
R1P  C2   H2    SING  N  N  15  
R1P  O2   HO2   SING  N  N  16  
R1P  C3   O3    SING  N  N  17  
R1P  C3   H3    SING  N  N  18  
R1P  O3   HO3   SING  N  N  19  
R1P  O1   P     SING  N  N  20  
R1P  P    O1P   DOUB  N  N  21  
R1P  P    O2P   SING  N  N  22  
R1P  P    O3P   SING  N  N  23  
R1P  O2P  HOP2  SING  N  N  24  
R1P  O3P  HOP3  SING  N  N  25  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
R1P  SMILES            ACDLabs               10.04  "O=P(OC1OC(C(O)C1O)CO)(O)O"  
R1P  SMILES_CANONICAL  CACTVS                3.341  "OC[C@H]1O[C@H](O[P](O)(O)=O)[C@H](O)[C@@H]1O"  
R1P  SMILES            CACTVS                3.341  "OC[CH]1O[CH](O[P](O)(O)=O)[CH](O)[CH]1O"  
R1P  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C([C@@H]1[C@H]([C@H]([C@H](O1)OP(=O)(O)O)O)O)O"  
R1P  SMILES            "OpenEye OEToolkits"  1.5.0  "C(C1C(C(C(O1)OP(=O)(O)O)O)O)O"  
R1P  InChI             InChI                 1.03   "InChI=1S/C5H11O8P/c6-1-2-3(7)4(8)5(12-2)13-14(9,10)11/h2-8H,1H2,(H2,9,10,11)/t2-,3-,4-,5-/m1/s1"  
R1P  InChIKey          InChI                 1.03   YXJDFQJKERBOBM-TXICZTDVSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
R1P  "SYSTEMATIC NAME"            ACDLabs               10.04  1-O-phosphono-alpha-D-ribofuranose  
R1P  "SYSTEMATIC NAME"            "OpenEye OEToolkits"  1.5.0  "[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl] dihydrogen phosphate"  
R1P  "IUPAC CARBOHYDRATE SYMBOL"  PDB-CARE              1.0    a-D-Ribf1PO3  
#
_pdbx_chem_comp_related.comp_id            R1P
_pdbx_chem_comp_related.related_comp_id    RIB
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  R1P  C1   RIB  C1   "Carbohydrate core"  
 2  R1P  C2   RIB  C2   "Carbohydrate core"  
 3  R1P  C3   RIB  C3   "Carbohydrate core"  
 4  R1P  C4   RIB  C4   "Carbohydrate core"  
 5  R1P  C5   RIB  C5   "Carbohydrate core"  
 6  R1P  O1   RIB  O1   "Carbohydrate core"  
 7  R1P  O2   RIB  O2   "Carbohydrate core"  
 8  R1P  O3   RIB  O3   "Carbohydrate core"  
 9  R1P  O4   RIB  O4   "Carbohydrate core"  
10  R1P  O5   RIB  O5   "Carbohydrate core"  
11  R1P  H1   RIB  H1   "Carbohydrate core"  
12  R1P  H2   RIB  H2   "Carbohydrate core"  
13  R1P  H3   RIB  H3   "Carbohydrate core"  
14  R1P  H4   RIB  H4   "Carbohydrate core"  
15  R1P  H51  RIB  H51  "Carbohydrate core"  
16  R1P  H52  RIB  H52  "Carbohydrate core"  
17  R1P  HO2  RIB  HO2  "Carbohydrate core"  
18  R1P  HO3  RIB  HO3  "Carbohydrate core"  
19  R1P  HO5  RIB  HO5  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
R1P  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
R1P  "CARBOHYDRATE RING"                    furanose  PDB  ?  
R1P  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
R1P  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
R1P  "Create component"          1999-07-08  RCSB  
R1P  "Modify descriptor"         2011-06-04  RCSB  
R1P  "Other modification"        2020-07-03  RCSB  
R1P  "Modify parent residue"     2020-07-17  RCSB  
R1P  "Modify name"               2020-07-17  RCSB  
R1P  "Modify synonyms"           2020-07-17  RCSB  
R1P  "Modify linking type"       2020-07-17  RCSB  
R1P  "Modify atom id"            2020-07-17  RCSB  
R1P  "Modify component atom id"  2020-07-17  RCSB  
R1P  "Modify leaving atom flag"  2020-07-17  RCSB  
##
