data_N6P
#

_chem_comp.id                                   N6P
_chem_comp.name                                 "6-(naphthalen-2-yl)-9-(5-O-phosphono-beta-D-ribofuranosyl)-9H-purine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H19 N4 O7 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "6-Naphthylpurine riboside 5'-monophosphate"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2014-03-21
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       458.361
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    N6P
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4P5D
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
N6P  C1   C60    C  0  1  Y  N  N  50.067  60.098   -9.848   5.381  -0.426   0.174  C1   N6P   1  
N6P  C2   C69    C  0  1  Y  N  N  51.361  60.546  -10.084   6.422   0.500   0.347  C2   N6P   2  
N6P  C3   C68    C  0  1  Y  N  N  52.380  60.232   -9.182   7.660   0.109   0.886  C3   N6P   3  
N6P  C4   C67    C  0  1  Y  N  N  53.668  60.690   -9.421   8.649   1.032   1.040  C4   N6P   4  
N6P  C5   C66    C  0  1  Y  N  N  53.960  61.447  -10.553   8.452   2.361   0.672  C5   N6P   5  
N6P  C6   C65    C  0  1  Y  N  N  52.939  61.761  -11.447   7.266   2.776   0.146  C6   N6P   6  
N6P  C7   C64    C  0  1  Y  N  N  51.643  61.307  -11.207   6.222   1.852  -0.029  C7   N6P   7  
N6P  C8   C63    C  0  1  Y  N  N  50.625  61.623  -12.100   4.985   2.250  -0.569  C8   N6P   8  
N6P  C9   C62    C  0  1  Y  N  N  49.335  61.179  -11.867   3.990   1.339  -0.729  C9   N6P   9  
N6P  C10  C61    C  0  1  Y  N  N  49.062  60.376  -10.753   4.179  -0.006  -0.366  C10  N6P  10  
N6P  C11  C6     C  0  1  Y  N  N  47.659  59.917  -10.412   3.077  -0.977  -0.551  C11  N6P  11  
N6P  N1   N1     N  0  1  Y  N  N  47.484  59.124   -9.333   3.331  -2.238  -0.896  N1   N6P  12  
N6P  C12  C2     C  0  1  Y  N  N  46.283  58.731   -8.966   2.355  -3.110  -1.063  C12  N6P  13  
N6P  N2   N3     N  0  1  Y  N  N  45.145  59.100   -9.597   1.087  -2.793  -0.901  N2   N6P  14  
N6P  C13  C4     C  0  1  Y  N  N  45.229  59.902  -10.704   0.734  -1.561  -0.558  C13  N6P  15  
N6P  C14  C5     C  0  1  Y  N  N  46.502  60.339  -11.148   1.738  -0.592  -0.362  C14  N6P  16  
N6P  N3   N7     N  0  1  Y  N  N  46.294  61.126  -12.250   1.117   0.561  -0.023  N3   N6P  17  
N6P  C15  C8     C  0  1  Y  N  N  44.953  61.176  -12.470  -0.171   0.370   0.000  C15  N6P  18  
N6P  N4   N9     N  0  1  Y  N  N  44.311  60.441  -11.560  -0.457  -0.924  -0.318  N4   N6P  19  
N6P  C16  "C1'"  C  0  1  N  N  R  42.941  60.287  -11.431  -1.792  -1.523  -0.397  C16  N6P  20  
N6P  O1   "O4'"  O  0  1  N  N  N  42.309  61.215  -12.574  -2.801  -0.499  -0.531  O1   N6P  21  
N6P  C17  "C2'"  C  0  1  N  N  R  42.572  60.878  -10.268  -2.158  -2.218   0.939  C17  N6P  22  
N6P  O2   "O2'"  O  0  1  N  N  N  41.578  60.100   -9.490  -1.666  -3.559   0.967  O2   N6P  23  
N6P  C18  "C3'"  C  0  1  N  N  S  41.939  62.276  -10.548  -3.705  -2.198   0.902  C18  N6P  24  
N6P  O3   "O3'"  O  0  1  N  N  N  40.677  62.432  -10.089  -4.211  -3.452   0.438  O3   N6P  25  
N6P  C19  "C4'"  C  0  1  N  N  R  41.869  62.375  -12.092  -4.044  -1.076  -0.099  C19  N6P  26  
N6P  C20  "C5'"  C  0  1  N  N  N  42.732  63.559  -12.512  -4.903  -0.010   0.586  C20  N6P  27  
N6P  O4   "O5'"  O  0  1  N  N  N  42.788  63.548  -13.946  -5.295   0.973  -0.374  O4   N6P  28  
N6P  P1   P      P  0  1  N  N  N  43.842  64.465  -14.697  -6.208   2.246  -0.001  P1   N6P  29  
N6P  O5   O2     O  0  1  N  N  N  45.235  64.109  -14.331  -7.671   1.744   0.448  O5   N6P  30  
N6P  O6   O3     O  0  1  N  N  N  43.617  64.231  -16.172  -5.581   2.995   1.110  O6   N6P  31  
N6P  O7   O1     O  0  1  N  N  N  43.549  65.897  -14.347  -6.342   3.205  -1.287  O7   N6P  32  
N6P  H1   H1     H  0  1  N  N  N  49.847  59.531   -8.955   5.520  -1.460   0.456  H1   N6P  33  
N6P  H2   H2     H  0  1  N  N  N  52.167  59.638   -8.306   7.826  -0.918   1.177  H2   N6P  34  
N6P  H3   H3     H  0  1  N  N  N  54.455  60.456   -8.719   9.599   0.730   1.455  H3   N6P  35  
N6P  H4   H4     H  0  1  N  N  N  54.969  61.787  -10.736   9.252   3.074   0.805  H4   N6P  36  
N6P  H5   H5     H  0  1  N  N  N  53.151  62.355  -12.324   7.129   3.809  -0.135  H5   N6P  37  
N6P  H6   H6     H  0  1  N  N  N  50.841  62.216  -12.977   4.825   3.280  -0.852  H6   N6P  38  
N6P  H7   H7     H  0  1  N  N  N  48.539  61.452  -12.544   3.043   1.652  -1.143  H7   N6P  39  
N6P  H8   H8     H  0  1  N  N  N  46.201  58.076   -8.111   2.606  -4.122  -1.343  H8   N6P  40  
N6P  H9   H9     H  0  1  N  N  N  44.477  61.730  -13.265  -0.905   1.125   0.240  H9   N6P  41  
N6P  H10  H10    H  0  1  N  N  N  42.596  59.248  -11.543  -1.846  -2.229  -1.225  H10  N6P  42  
N6P  H11  H11    H  0  1  N  N  N  43.455  61.041   -9.632  -1.781  -1.650   1.790  H11  N6P  43  
N6P  H12  H12    H  0  1  N  N  N  41.364  60.568   -8.691  -1.870  -4.036   1.783  H12  N6P  44  
N6P  H13  H13    H  0  1  N  N  N  42.615  63.056  -10.168  -4.108  -1.967   1.888  H13  N6P  45  
N6P  H14  H14    H  0  1  N  N  N  40.676  62.378   -9.141  -3.976  -4.202   1.000  H14  N6P  46  
N6P  H15  H15    H  0  1  N  N  N  40.827  62.571  -12.385  -4.578  -1.491  -0.954  H15  N6P  47  
N6P  H16  H16    H  0  1  N  N  N  43.744  63.456  -12.093  -5.791  -0.478   1.011  H16  N6P  48  
N6P  H17  H17    H  0  1  N  N  N  42.282  64.499  -12.158  -4.327   0.465   1.379  H17  N6P  49  
N6P  H18  H18    H  0  1  N  N  N  45.698  63.807  -15.103  -8.142   1.244  -0.233  H18  N6P  50  
N6P  H19  H19    H  0  1  N  N  N  43.281  66.366  -15.128  -6.880   3.994  -1.135  H19  N6P  51  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
N6P  O6   P1   DOUB  N  N   1  
N6P  P1   O7   SING  N  N   2  
N6P  P1   O5   SING  N  N   3  
N6P  P1   O4   SING  N  N   4  
N6P  O4   C20  SING  N  N   5  
N6P  O1   C19  SING  N  N   6  
N6P  O1   C16  SING  N  N   7  
N6P  C20  C19  SING  N  N   8  
N6P  C15  N3   DOUB  Y  N   9  
N6P  C15  N4   SING  Y  N  10  
N6P  N3   C14  SING  Y  N  11  
N6P  C8   C9   DOUB  Y  N  12  
N6P  C8   C7   SING  Y  N  13  
N6P  C19  C18  SING  N  N  14  
N6P  C9   C10  SING  Y  N  15  
N6P  N4   C16  SING  N  N  16  
N6P  N4   C13  SING  Y  N  17  
N6P  C6   C7   DOUB  Y  N  18  
N6P  C6   C5   SING  Y  N  19  
N6P  C16  C17  SING  N  N  20  
N6P  C7   C2   SING  Y  N  21  
N6P  C14  C13  DOUB  Y  N  22  
N6P  C14  C11  SING  Y  N  23  
N6P  C10  C11  SING  N  N  24  
N6P  C10  C1   DOUB  Y  N  25  
N6P  C13  N2   SING  Y  N  26  
N6P  C5   C4   DOUB  Y  N  27  
N6P  C18  C17  SING  N  N  28  
N6P  C18  O3   SING  N  N  29  
N6P  C11  N1   DOUB  Y  N  30  
N6P  C17  O2   SING  N  N  31  
N6P  C2   C1   SING  Y  N  32  
N6P  C2   C3   DOUB  Y  N  33  
N6P  N2   C12  DOUB  Y  N  34  
N6P  C4   C3   SING  Y  N  35  
N6P  N1   C12  SING  Y  N  36  
N6P  C1   H1   SING  N  N  37  
N6P  C3   H2   SING  N  N  38  
N6P  C4   H3   SING  N  N  39  
N6P  C5   H4   SING  N  N  40  
N6P  C6   H5   SING  N  N  41  
N6P  C8   H6   SING  N  N  42  
N6P  C9   H7   SING  N  N  43  
N6P  C12  H8   SING  N  N  44  
N6P  C15  H9   SING  N  N  45  
N6P  C16  H10  SING  N  N  46  
N6P  C17  H11  SING  N  N  47  
N6P  O2   H12  SING  N  N  48  
N6P  C18  H13  SING  N  N  49  
N6P  O3   H14  SING  N  N  50  
N6P  C19  H15  SING  N  N  51  
N6P  C20  H16  SING  N  N  52  
N6P  C20  H17  SING  N  N  53  
N6P  O5   H18  SING  N  N  54  
N6P  O7   H19  SING  N  N  55  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
N6P  SMILES            ACDLabs               12.01  "O=P(O)(O)OCC5OC(n2cnc1c(ncnc12)c4cc3ccccc3cc4)C(O)C5O"  
N6P  InChI             InChI                 1.03   "InChI=1S/C20H19N4O7P/c25-17-14(8-30-32(27,28)29)31-20(18(17)26)24-10-23-16-15(21-9-22-19(16)24)13-6-5-11-3-1-2-4-12(11)7-13/h1-7,9-10,14,17-18,20,25-26H,8H2,(H2,27,28,29)/t14-,17-,18-,20-/m1/s1"  
N6P  InChIKey          InChI                 1.03   LQGRESLLVHYRLI-VXXKDZQQSA-N  
N6P  SMILES_CANONICAL  CACTVS                3.385  "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3c2ncnc3c4ccc5ccccc5c4"  
N6P  SMILES            CACTVS                3.385  "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)n2cnc3c2ncnc3c4ccc5ccccc5c4"  
N6P  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "c1ccc2cc(ccc2c1)c3c4c(ncn3)n(cn4)[C@H]5[C@@H]([C@@H]([C@H](O5)COP(=O)(O)O)O)O"  
N6P  SMILES            "OpenEye OEToolkits"  1.9.2  "c1ccc2cc(ccc2c1)c3c4c(ncn3)n(cn4)C5C(C(C(O5)COP(=O)(O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
N6P  "SYSTEMATIC NAME"  ACDLabs               12.01  "6-(naphthalen-2-yl)-9-(5-O-phosphono-beta-D-ribofuranosyl)-9H-purine"  
N6P  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "[(2R,3S,4R,5R)-5-(6-naphthalen-2-ylpurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
N6P  "Create component"   2014-03-21  RCSB  
N6P  "Initial release"    2014-08-20  RCSB  
N6P  "Modify descriptor"  2014-09-05  RCSB  
N6P  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     N6P
_pdbx_chem_comp_synonyms.name        "6-Naphthylpurine riboside 5'-monophosphate"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
