data_G5P
# 
_chem_comp.id                                    G5P 
_chem_comp.name                                  
;P1-(5'-ADENOSYL)-P5-(5'-GUANOSYL) PENTAPHOSPHATE
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H29 N10 O23 P5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2005-12-15 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        932.366 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     G5P 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2F3R 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
G5P PE     PE   P 0 1 N N R 14.202 -7.684  -1.223 -4.542  -0.290 -0.395 PE     G5P 1  
G5P O1E    O1E  O 0 1 N N N 13.869 -7.220  0.157  -5.056  1.049  -1.127 O1E    G5P 2  
G5P O2E    O2E  O 0 1 N N N 13.500 -7.101  -2.376 -3.843  -1.150 -1.376 O2E    G5P 3  
G5P PD     PD   P 0 1 N N S 17.210 -7.652  -0.942 -2.138  0.523  0.097  PD     G5P 4  
G5P O1D    O1D  O 0 1 N N N 17.620 -6.576  0.039  -1.374  -0.798 -0.418 O1D    G5P 5  
G5P O2D    O2D  O 0 1 N N N 16.954 -8.955  -0.203 -2.411  1.415  -1.052 O2D    G5P 6  
G5P O3D    O3D  O 0 1 N N N 15.766 -7.329  -1.552 -3.528  0.103  0.792  O3D    G5P 7  
G5P PG     PG   P 0 1 N N S 18.565 -7.425  -3.422 -0.127  2.132  0.325  PG     G5P 8  
G5P O1G    O1G  O 0 1 N N N 18.316 -8.523  -4.413 -0.800  3.490  -0.218 O1G    G5P 9  
G5P O2G    O2G  O 0 1 N N N 19.952 -6.895  -3.820 0.342   1.321  -0.820 O2G    G5P 10 
G5P O3G    O3G  O 0 1 N N N 18.400 -7.869  -2.002 -1.214  1.294  1.167  O3G    G5P 11 
G5P PB     PB   P 0 1 N N S 17.743 -4.854  -4.450 2.320   2.963  0.306  PB     G5P 12 
G5P O1B    O1B  O 0 1 N N N 18.383 -3.778  -3.627 2.086   4.493  -0.136 O1B    G5P 13 
G5P O2B    O2B  O 0 1 N N N 16.511 -4.399  -5.220 2.349   2.101  -0.897 O2B    G5P 14 
G5P O3B    O3B  O 0 1 N N N 17.565 -6.181  -3.724 1.122   2.494  1.274  O3B    G5P 15 
G5P O3A    O3A  O 0 1 N N N 18.865 -5.194  -5.637 3.722   2.838  1.088  O3A    G5P 16 
G5P PA     PA   P 0 1 N N S 19.483 -4.303  -6.790 4.884   2.928  -0.023 PA     G5P 17 
G5P O1A    O1A  O 0 1 N N N 18.865 -2.946  -6.831 5.131   4.469  -0.419 O1A    G5P 18 
G5P O2A    O2A  O 0 1 N N N 19.597 -5.069  -8.095 4.477   2.168  -1.226 O2A    G5P 19 
G5P "O5'"  O5*  O 0 1 N N N 20.996 -4.165  -6.282 6.244   2.303  0.572  "O5'"  G5P 20 
G5P "C5'"  C5*  C 0 1 N N N 21.214 -3.488  -5.079 7.198   2.302  -0.492 "C5'"  G5P 21 
G5P "C4'"  C4*  C 0 1 N N R 22.629 -3.640  -4.625 8.520   1.717  0.009  "C4'"  G5P 22 
G5P "O4'"  O4*  O 0 1 N N N 23.347 -2.558  -5.314 8.362   0.318  0.327  "O4'"  G5P 23 
G5P "C3'"  C3*  C 0 1 N N S 22.702 -3.392  -3.112 9.584   1.750  -1.111 "C3'"  G5P 24 
G5P "O3'"  O3*  O 0 1 N N N 23.863 -4.165  -2.614 10.440  2.883  -0.956 "O3'"  G5P 25 
G5P "C2'"  C2*  C 0 1 N N R 22.935 -1.915  -3.041 10.379  0.438  -0.913 "C2'"  G5P 26 
G5P "O2'"  O2*  O 0 1 N N N 23.454 -1.551  -1.813 11.751  0.721  -0.632 "O2'"  G5P 27 
G5P "C1'"  C1*  C 0 1 N N R 23.796 -1.651  -4.334 9.697   -0.232 0.301  "C1'"  G5P 28 
G5P N9     N9   N 0 1 Y N N 23.549 -0.197  -4.876 9.647   -1.685 0.121  N9     G5P 29 
G5P C8     C8   C 0 1 Y N N 22.357 0.266   -5.366 8.614   -2.397 -0.415 C8     G5P 30 
G5P N7     N7   N 0 1 Y N N 22.471 1.555   -5.749 8.908   -3.664 -0.422 N7     G5P 31 
G5P C5     C5   C 0 1 Y N N 23.791 1.900   -5.481 10.143  -3.841 0.107  C5     G5P 32 
G5P C6     C6   C 0 1 Y N N 24.464 3.134   -5.687 10.960  -4.971 0.347  C6     G5P 33 
G5P O6     O6   O 0 1 N N N 23.949 4.161   -6.161 10.577  -6.091 0.055  O6     G5P 34 
G5P N1     N1   N 0 1 Y N N 25.823 3.105   -5.291 12.177  -4.777 0.901  N1     G5P 35 
G5P C2     C2   C 0 1 Y N N 26.431 1.959   -4.750 12.592  -3.520 1.228  C2     G5P 36 
G5P N2     N2   N 0 1 N N N 27.739 2.029   -4.402 13.831  -3.355 1.795  N2     G5P 37 
G5P N3     N3   N 0 1 Y N N 25.770 0.785   -4.558 11.843  -2.463 1.010  N3     G5P 38 
G5P C4     C4   C 0 1 Y N N 24.473 0.832   -4.944 10.629  -2.576 0.460  C4     G5P 39 
G5P O5F    AO5* O 0 1 N N N 14.294 -9.214  -1.334 -5.801  -1.086 0.215  O5F    G5P 40 
G5P C5F    AC5* C 0 1 N N N 13.275 -10.158 -0.923 -6.600  -1.507 -0.892 C5F    G5P 41 
G5P C4F    AC4* C 0 1 N N R 13.929 -11.447 -0.554 -7.820  -2.274 -0.378 C4F    G5P 42 
G5P O4F    AO4* O 0 1 N N N 12.973 -12.492 -0.421 -8.686  -1.385 0.348  O4F    G5P 43 
G5P C1F    AC1* C 0 1 N N R 13.366 -13.658 -1.192 -10.040 -1.825 0.107  C1F    G5P 44 
G5P C2F    AC2* C 0 1 N N R 14.215 -13.091 -2.324 -10.034 -2.206 -1.396 C2F    G5P 45 
G5P O2F    AO2* O 0 1 N N N 14.953 -14.187 -2.877 -11.056 -3.162 -1.683 O2F    G5P 46 
G5P C3F    AC3* C 0 1 N N S 15.043 -11.993 -1.582 -8.626  -2.834 -1.566 C3F    G5P 47 
G5P O3F    AO3* O 0 1 N N N 16.108 -12.519 -0.725 -8.703  -4.259 -1.500 O3F    G5P 48 
G5P N9A    AN9  N 0 1 Y N N 12.216 -14.454 -1.725 -10.988 -0.738 0.363  N9A    G5P 49 
G5P C4A    AC4  C 0 1 Y N N 11.863 -15.733 -1.269 -12.317 -0.878 0.674  C4A    G5P 50 
G5P N3A    AN3  N 0 1 Y N N 12.505 -16.470 -0.261 -13.137 -1.909 0.850  N3A    G5P 51 
G5P C2A    AC2  C 0 1 Y N N 11.941 -17.689 -0.033 -14.402 -1.716 1.159  C2A    G5P 52 
G5P N1A    AN1  N 0 1 Y N N 10.848 -18.197 -0.701 -14.917 -0.510 1.314  N1A    G5P 53 
G5P C6A    AC6  C 0 1 Y N N 10.223 -17.469 -1.693 -14.174 0.581  1.163  C6A    G5P 54 
G5P N6A    AN6  N 0 1 N N N 9.184  -18.074 -2.260 -14.723 1.841  1.327  N6A    G5P 55 
G5P C5A    AC5  C 0 1 Y N N 10.754 -16.139 -2.012 -12.817 0.426  0.833  C5A    G5P 56 
G5P N7A    AN7  N 0 1 Y N N 10.422 -15.140 -2.909 -11.788 1.278  0.607  N7A    G5P 57 
G5P C8A    AC8  C 0 1 Y N N 11.299 -14.169 -2.711 -10.714 0.596  0.331  C8A    G5P 58 
G5P H1E    H1E  H 0 1 N N N 13.798 -7.970  0.735  -5.504  1.580  -0.454 H1E    G5P 59 
G5P H1D    H1D  H 0 1 N N N 17.706 -6.954  0.906  -1.216  -1.350 0.360  H1D    G5P 60 
G5P H1G    H1G  H 0 1 N N N 18.263 -8.155  -5.287 -1.092  3.987  0.558  H1G    G5P 61 
G5P H1B    H1B  H 0 1 N N N 18.518 -4.094  -2.742 2.075   5.019  0.675  H1B    G5P 62 
G5P H1A    H1A  H 0 1 N N N 18.734 -2.630  -5.945 5.394   4.927  0.391  H1A    G5P 63 
G5P "H5'1" 1H5* H 0 0 N N N 20.552 -3.916  -4.312 7.360   3.324  -0.835 "H5'1" G5P 64 
G5P "H5'2" 2H5* H 0 0 N N N 21.000 -2.419  -5.227 6.822   1.697  -1.317 "H5'2" G5P 65 
G5P "H4'"  H4*  H 0 1 N N N 23.040 -4.638  -4.838 8.871   2.268  0.882  "H4'"  G5P 66 
G5P H7     H7   H 0 1 N N N 21.824 -3.690  -2.520 9.106   1.764  -2.091 H7     G5P 67 
G5P H9     H9   H 0 1 N N N 24.465 -4.331  -3.330 11.080  2.851  -1.679 H9     G5P 68 
G5P H10    H10  H 0 1 N N N 22.045 -1.269  -3.065 10.294  -0.197 -1.795 H10    G5P 69 
G5P H11    H11  H 0 1 N N N 24.398 -1.467  -1.880 12.102  1.191  -1.400 H11    G5P 70 
G5P "H1'"  H1*  H 0 1 N N N 24.865 -1.770  -4.104 10.228  0.018  1.220  "H1'"  G5P 71 
G5P H8     H8   H 0 1 N N N 21.452 -0.319  -5.436 7.690   -1.972 -0.778 H8     G5P 72 
G5P HN1    HN1  H 0 1 N N N 26.372 3.933   -5.401 12.755  -5.537 1.075  HN1    G5P 73 
G5P HN21   1HN2 H 0 0 N N N 28.323 2.836   -4.496 14.142  -2.466 2.029  HN21   G5P 74 
G5P HN22   2HN2 H 0 0 N N N 28.026 1.144   -4.036 14.394  -4.126 1.965  HN22   G5P 75 
G5P H11X   1H1  H 0 0 N N N 12.567 -10.323 -1.748 -6.930  -0.634 -1.455 H11X   G5P 76 
G5P H12    2H1  H 0 1 N N N 12.729 -9.759  -0.055 -6.010  -2.156 -1.540 H12    G5P 77 
G5P H1     H1   H 0 1 N N N 14.430 -11.197 0.393  -7.499  -3.090 0.270  H1     G5P 78 
G5P H2     H2   H 0 1 N N N 13.905 -14.377 -0.557 -10.277 -2.693 0.722  H2     G5P 79 
G5P "H2'"  H2*  H 0 1 N N N 13.707 -12.639 -3.189 -10.145 -1.320 -2.022 "H2'"  G5P 80 
G5P H3     H3   H 0 1 N N N 15.116 -14.026 -3.799 -10.999 -3.356 -2.629 H3     G5P 81 
G5P "H3'"  H3*  H 0 1 N N N 15.515 -11.303 -2.297 -8.180  -2.521 -2.510 "H3'"  G5P 82 
G5P H4     H4   H 0 1 N N N 16.900 -12.633 -1.237 -9.267  -4.543 -2.232 H4     G5P 83 
G5P H6     H6   H 0 1 N N N 12.386 -18.307 0.733  -15.042 -2.575 1.291  H6     G5P 84 
G5P HN61   1HN6 H 0 0 N N N 8.613  -17.701 -2.992 -14.170 2.630  1.214  HN61   G5P 85 
G5P HN62   2HN6 H 0 0 N N N 9.074  -18.968 -1.825 -15.661 1.935  1.555  HN62   G5P 86 
G5P H5     H5   H 0 1 N N N 11.296 -13.244 -3.268 -9.748  1.025  0.110  H5     G5P 87 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
G5P PE    O1E    SING N N 1  
G5P PE    O2E    DOUB N N 2  
G5P PE    O3D    SING N N 3  
G5P PE    O5F    SING N N 4  
G5P O1E   H1E    SING N N 5  
G5P PD    O1D    SING N N 6  
G5P PD    O2D    DOUB N N 7  
G5P PD    O3D    SING N N 8  
G5P PD    O3G    SING N N 9  
G5P O1D   H1D    SING N N 10 
G5P PG    O1G    SING N N 11 
G5P PG    O2G    DOUB N N 12 
G5P PG    O3G    SING N N 13 
G5P PG    O3B    SING N N 14 
G5P O1G   H1G    SING N N 15 
G5P PB    O1B    SING N N 16 
G5P PB    O2B    DOUB N N 17 
G5P PB    O3B    SING N N 18 
G5P PB    O3A    SING N N 19 
G5P O1B   H1B    SING N N 20 
G5P O3A   PA     SING N N 21 
G5P PA    O1A    SING N N 22 
G5P PA    O2A    DOUB N N 23 
G5P PA    "O5'"  SING N N 24 
G5P O1A   H1A    SING N N 25 
G5P "O5'" "C5'"  SING N N 26 
G5P "C5'" "C4'"  SING N N 27 
G5P "C5'" "H5'1" SING N N 28 
G5P "C5'" "H5'2" SING N N 29 
G5P "C4'" "O4'"  SING N N 30 
G5P "C4'" "C3'"  SING N N 31 
G5P "C4'" "H4'"  SING N N 32 
G5P "O4'" "C1'"  SING N N 33 
G5P "C3'" "O3'"  SING N N 34 
G5P "C3'" "C2'"  SING N N 35 
G5P "C3'" H7     SING N N 36 
G5P "O3'" H9     SING N N 37 
G5P "C2'" "O2'"  SING N N 38 
G5P "C2'" "C1'"  SING N N 39 
G5P "C2'" H10    SING N N 40 
G5P "O2'" H11    SING N N 41 
G5P "C1'" N9     SING N N 42 
G5P "C1'" "H1'"  SING N N 43 
G5P N9    C8     SING Y N 44 
G5P N9    C4     SING Y N 45 
G5P C8    N7     DOUB Y N 46 
G5P C8    H8     SING N N 47 
G5P N7    C5     SING Y N 48 
G5P C5    C6     SING Y N 49 
G5P C5    C4     DOUB Y N 50 
G5P C6    O6     DOUB N N 51 
G5P C6    N1     SING Y N 52 
G5P N1    C2     SING Y N 53 
G5P N1    HN1    SING N N 54 
G5P C2    N2     SING N N 55 
G5P C2    N3     DOUB Y N 56 
G5P N2    HN21   SING N N 57 
G5P N2    HN22   SING N N 58 
G5P N3    C4     SING Y N 59 
G5P O5F   C5F    SING N N 60 
G5P C5F   C4F    SING N N 61 
G5P C5F   H11X   SING N N 62 
G5P C5F   H12    SING N N 63 
G5P C4F   O4F    SING N N 64 
G5P C4F   C3F    SING N N 65 
G5P C4F   H1     SING N N 66 
G5P O4F   C1F    SING N N 67 
G5P C1F   C2F    SING N N 68 
G5P C1F   N9A    SING N N 69 
G5P C1F   H2     SING N N 70 
G5P C2F   O2F    SING N N 71 
G5P C2F   C3F    SING N N 72 
G5P C2F   "H2'"  SING N N 73 
G5P O2F   H3     SING N N 74 
G5P C3F   O3F    SING N N 75 
G5P C3F   "H3'"  SING N N 76 
G5P O3F   H4     SING N N 77 
G5P N9A   C4A    SING Y N 78 
G5P N9A   C8A    SING Y N 79 
G5P C4A   N3A    SING Y N 80 
G5P C4A   C5A    DOUB Y N 81 
G5P N3A   C2A    DOUB Y N 82 
G5P C2A   N1A    SING Y N 83 
G5P C2A   H6     SING N N 84 
G5P N1A   C6A    DOUB Y N 85 
G5P C6A   N6A    SING N N 86 
G5P C6A   C5A    SING Y N 87 
G5P N6A   HN61   SING N N 88 
G5P N6A   HN62   SING N N 89 
G5P C5A   N7A    SING Y N 90 
G5P N7A   C8A    DOUB Y N 91 
G5P C8A   H5     SING N N 92 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
G5P SMILES_CANONICAL CACTVS               3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P@@](O)(=O)O[P@@](O)(=O)O[P@](O)(=O)O[P@@](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)[C@@H](O)[C@H]3O" 
G5P SMILES           CACTVS               3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)[CH](O)[CH]3O" 
G5P SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@](=O)(O)O[P@@](=O)(O)O[P@@](=O)(O)O[P@@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5N=C(NC6=O)N)O)O)O)O)N" 
G5P SMILES           "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5N=C(NC6=O)N)O)O)O)O)N" 
G5P InChI            InChI                1.03  
;InChI=1S/C20H29N10O23P5/c21-14-8-15(24-3-23-14)29(4-25-8)18-12(33)10(31)6(48-18)1-46-54(36,37)50-56(40,41)52-58(44,45)53-57(42,43)51-55(38,39)47-2-7-11(32)13(34)19(49-7)30-5-26-9-16(30)27-20(22)28-17(9)35/h3-7,10-13,18-19,31-34H,1-2H2,(H,36,37)(H,38,39)(H,40,41)(H,42,43)(H,44,45)(H2,21,23,24)(H3,22,27,28,35)/t6-,7-,10-,11-,12-,13-,18-,19-/m1/s1
;
G5P InChIKey         InChI                1.03  CNMILLPGDWDFCZ-INFSMZHSSA-N 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
G5P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 
;[[[[[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl] [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl hydrogen phosphate
;
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
G5P "Create component"  2005-12-15 RCSB 
G5P "Modify descriptor" 2011-06-04 RCSB 
# 
