data_G4P
#

_chem_comp.id                                   G4P
_chem_comp.name                                 "GUANOSINE-5',3'-TETRAPHOSPHATE"
_chem_comp.type                                 "RNA LINKING"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C10 H17 N5 O17 P4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "guanosine tetraphosphate;ppGpp"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2002-05-16
_chem_comp.pdbx_modified_date                   2020-06-24
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       603.160
_chem_comp.one_letter_code                      N
_chem_comp.three_letter_code                    G4P
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1LNZ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
G4P  PB      PB    P  0  1  N  N  N   9.060  68.309  71.663   4.684  -4.187  -0.023  PB      G4P   1  
G4P  O1B     O1B   O  0  1  N  N  N   8.231  69.237  72.448   4.172  -4.147   1.365  O1B     G4P   2  
G4P  O2B     O2B   O  0  1  N  N  N   8.949  68.266  70.190   4.940  -5.716  -0.457  O2B     G4P   3  
G4P  O3B     O3B   O  0  1  N  N  N  10.582  68.480  71.740   6.067  -3.367  -0.109  O3B     G4P   4  
G4P  O3A     O3A   O  0  1  N  N  N   8.518  66.775  72.067   3.603  -3.522  -1.014  O3A     G4P   5  
G4P  PA      PA    P  0  1  N  N  S   8.407  66.284  73.590   3.099  -2.165  -0.308  PA      G4P   6  
G4P  O1A     O1A   O  0  1  N  N  N   9.338  65.150  73.418   2.938  -2.395   1.145  O1A     G4P   7  
G4P  O2A     O2A   O  0  1  N  N  N   8.707  67.255  74.678   4.183  -0.999  -0.551  O2A     G4P   8  
G4P  "O5'"   O5*   O  0  1  N  N  N   6.958  65.650  73.573   1.686  -1.724  -0.942  "O5'"   G4P   9  
G4P  "C5'"   C5*   C  0  1  N  N  N   5.728  66.309  73.723   1.237  -0.589  -0.199  "C5'"   G4P  10  
G4P  "C4'"   C4*   C  0  1  N  N  R   4.762  65.419  74.549  -0.109  -0.117  -0.753  "C4'"   G4P  11  
G4P  "O4'"   O4*   O  0  1  N  N  N   4.119  64.328  73.814  -1.129  -1.110  -0.510  "O4'"   G4P  12  
G4P  "C3'"   C3*   C  0  1  N  N  S   5.379  64.616  75.794  -0.594   1.140   0.004  "C3'"   G4P  13  
G4P  "O3'"   O3*   O  0  1  N  N  N   4.626  65.017  76.965  -0.281   2.322  -0.736  "O3'"   G4P  14  
G4P  "C2'"   C2*   C  0  1  N  N  R   5.183  63.104  75.525  -2.126   0.951   0.104  "C2'"   G4P  15  
G4P  "O2'"   O2*   O  0  1  N  N  N   4.584  62.437  76.653  -2.806   2.013  -0.569  "O2'"   G4P  16  
G4P  "C1'"   C1*   C  0  1  N  N  R   4.287  63.043  74.351  -2.382  -0.399  -0.602  "C1'"   G4P  17  
G4P  N9      N9    N  0  1  Y  N  N   4.783  62.114  73.268  -3.442  -1.141   0.086  N9      G4P  18  
G4P  C8      C8    C  0  1  Y  N  N   5.920  62.060  72.496  -3.267  -2.078   1.063  C8      G4P  19  
G4P  N7      N7    N  0  1  Y  N  N   5.942  61.057  71.661  -4.423  -2.533   1.449  N7      G4P  20  
G4P  C5      C5    C  0  1  Y  N  N   4.765  60.395  71.858  -5.405  -1.919   0.745  C5      G4P  21  
G4P  C6      C6    C  0  1  N  N  N   4.188  59.210  71.264  -6.816  -2.010   0.738  C6      G4P  22  
G4P  O6      O6    O  0  1  N  N  N   4.657  58.509  70.396  -7.397  -2.778   1.486  O6      G4P  23  
G4P  N1      N1    N  0  1  N  N  N   2.907  58.854  71.769  -7.506  -1.221  -0.115  N1      G4P  24  
G4P  C2      C2    C  0  1  N  N  N   2.233  59.550  72.767  -6.847  -0.370  -0.952  C2      G4P  25  
G4P  N2      N2    N  0  1  N  N  N   1.056  59.075  73.134  -7.573   0.415  -1.812  N2      G4P  26  
G4P  N3      N3    N  0  1  N  N  N   2.769  60.689  73.368  -5.536  -0.276  -0.954  N3      G4P  27  
G4P  C4      C4    C  0  1  Y  N  N   4.007  61.025  72.851  -4.787  -1.022  -0.133  C4      G4P  28  
G4P  PC      PC    P  0  1  N  N  S   4.380  65.085  78.309   0.677   3.216   0.200  PC      G4P  29  
G4P  O1C     O1C   O  0  1  N  N  N   4.591  63.855  79.137   1.848   2.413   0.617  O1C     G4P  30  
G4P  O2C     O2C   O  0  1  N  N  N   3.045  65.740  78.340  -0.139   3.693   1.503  O2C     G4P  31  
G4P  O3C     O3C   O  0  1  N  N  N   5.774  65.917  78.744   1.176   4.507  -0.623  O3C     G4P  32  
G4P  PD      PD    P  0  1  N  N  N   5.792  67.631  78.985   2.495   5.052   0.123  PD      G4P  33  
G4P  O1D     O1D   O  0  1  N  N  N   5.095  68.226  77.816   2.307   4.960   1.588  O1D     G4P  34  
G4P  O2D     O2D   O  0  1  N  N  N   7.276  67.884  79.107   3.764   4.163  -0.312  O2D     G4P  35  
G4P  O3D     O3D   O  0  1  N  N  N   5.369  68.126  80.417   2.749   6.588  -0.290  O3D     G4P  36  
G4P  HOB2    2HOB  H  0  0  N  N  N   8.032  68.257  69.941   5.591  -6.077   0.159  HOB2    G4P  37  
G4P  HOB3    3HOB  H  0  0  N  N  N  10.942  68.515  70.862   6.365  -3.417  -1.027  HOB3    G4P  38  
G4P  HOA2    2HOA  H  0  0  N  N  N   8.771  66.794  75.506   4.258  -0.882  -1.508  HOA2    G4P  39  
G4P  "H5'"   1H5*  H  0  1  N  N  N   5.292  66.502  72.732   1.968   0.215  -0.286  "H5'"   G4P  40  
G4P  "H5''"  2H5*  H  0  0  N  N  N   5.885  67.264  74.246   1.122  -0.863   0.850  "H5''"  G4P  41  
G4P  "H4'"   H4*   H  0  1  N  N  N   4.081  66.225  74.859  -0.028   0.091  -1.820  "H4'"   G4P  42  
G4P  "H3'"   H3*   H  0  1  N  N  N   6.449  64.823  75.941  -0.148   1.183   0.998  "H3'"   G4P  43  
G4P  "H2'"   H2*   H  0  1  N  N  N   6.144  62.597  75.351  -2.437   0.901   1.147  "H2'"   G4P  44  
G4P  "HO2'"  *HO2  H  0  0  N  N  N   4.452  61.519  76.445  -3.753   1.843  -0.474  "HO2'"  G4P  45  
G4P  "H1'"   H1*   H  0  1  N  N  N   3.329  62.640  74.710  -2.651  -0.236  -1.646  "H1'"   G4P  46  
G4P  H8      H8    H  0  1  N  N  N   6.721  62.781  72.574  -2.312  -2.394   1.457  H8      G4P  47  
G4P  HN1     HN1   H  0  1  N  N  N   2.460  58.048  71.380  -8.475  -1.266  -0.138  HN1     G4P  48  
G4P  HN21    1HN2  H  0  0  N  N  N   0.617  58.261  72.753  -7.119   1.028  -2.410  HN21    G4P  49  
G4P  HN22    2HN2  H  0  0  N  N  N   0.673  59.656  73.852  -8.541   0.353  -1.824  HN22    G4P  50  
G4P  H2C     H2C   H  0  1  N  N  N   2.781  65.880  79.242  -0.892   4.211   1.188  H2C     G4P  51  
G4P  H2D     H2D   H  0  1  N  N  N   7.661  67.937  78.240   3.851   4.250  -1.271  H2D     G4P  52  
G4P  H3D     H3D   H  0  1  N  N  N   5.284  67.379  80.998   3.546   6.874   0.177  H3D     G4P  53  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
G4P  PB     O1B     DOUB  N  N   1  
G4P  PB     O2B     SING  N  N   2  
G4P  PB     O3B     SING  N  N   3  
G4P  PB     O3A     SING  N  N   4  
G4P  O2B    HOB2    SING  N  N   5  
G4P  O3B    HOB3    SING  N  N   6  
G4P  O3A    PA      SING  N  N   7  
G4P  PA     O1A     DOUB  N  N   8  
G4P  PA     O2A     SING  N  N   9  
G4P  PA     "O5'"   SING  N  N  10  
G4P  O2A    HOA2    SING  N  N  11  
G4P  "O5'"  "C5'"   SING  N  N  12  
G4P  "C5'"  "C4'"   SING  N  N  13  
G4P  "C5'"  "H5'"   SING  N  N  14  
G4P  "C5'"  "H5''"  SING  N  N  15  
G4P  "C4'"  "O4'"   SING  N  N  16  
G4P  "C4'"  "C3'"   SING  N  N  17  
G4P  "C4'"  "H4'"   SING  N  N  18  
G4P  "O4'"  "C1'"   SING  N  N  19  
G4P  "C3'"  "O3'"   SING  N  N  20  
G4P  "C3'"  "C2'"   SING  N  N  21  
G4P  "C3'"  "H3'"   SING  N  N  22  
G4P  "O3'"  PC      SING  N  N  23  
G4P  "C2'"  "O2'"   SING  N  N  24  
G4P  "C2'"  "C1'"   SING  N  N  25  
G4P  "C2'"  "H2'"   SING  N  N  26  
G4P  "O2'"  "HO2'"  SING  N  N  27  
G4P  "C1'"  N9      SING  N  N  28  
G4P  "C1'"  "H1'"   SING  N  N  29  
G4P  N9     C8      SING  Y  N  30  
G4P  N9     C4      SING  Y  N  31  
G4P  C8     N7      DOUB  Y  N  32  
G4P  C8     H8      SING  N  N  33  
G4P  N7     C5      SING  Y  N  34  
G4P  C5     C6      SING  N  N  35  
G4P  C5     C4      DOUB  Y  N  36  
G4P  C6     O6      DOUB  N  N  37  
G4P  C6     N1      SING  N  N  38  
G4P  N1     C2      SING  N  N  39  
G4P  N1     HN1     SING  N  N  40  
G4P  C2     N2      SING  N  N  41  
G4P  C2     N3      DOUB  N  N  42  
G4P  N2     HN21    SING  N  N  43  
G4P  N2     HN22    SING  N  N  44  
G4P  N3     C4      SING  N  N  45  
G4P  PC     O1C     DOUB  N  N  46  
G4P  PC     O2C     SING  N  N  47  
G4P  PC     O3C     SING  N  N  48  
G4P  O2C    H2C     SING  N  N  49  
G4P  O3C    PD      SING  N  N  50  
G4P  PD     O1D     DOUB  N  N  51  
G4P  PD     O2D     SING  N  N  52  
G4P  PD     O3D     SING  N  N  53  
G4P  O2D    H2D     SING  N  N  54  
G4P  O3D    H3D     SING  N  N  55  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
G4P  SMILES            ACDLabs               10.04  "O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3OP(=O)(O)OP(=O)(O)O"  
G4P  SMILES_CANONICAL  CACTVS                3.341  "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O[P@@](O)(=O)O[P](O)(O)=O)[C@H]3O"  
G4P  SMILES            CACTVS                3.341  "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O[P](O)(=O)O[P](O)(O)=O)[CH]3O"  
G4P  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O[P@](=O)(O)OP(=O)(O)O)O)N=C(NC2=O)N"  
G4P  SMILES            "OpenEye OEToolkits"  1.5.0  "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)OP(=O)(O)OP(=O)(O)O)O)N=C(NC2=O)N"  
G4P  InChI             InChI                 1.03   "InChI=1S/C10H17N5O17P4/c11-10-13-7-4(8(17)14-10)12-2-15(7)9-5(16)6(30-36(26,27)32-34(21,22)23)3(29-9)1-28-35(24,25)31-33(18,19)20/h2-3,5-6,9,16H,1H2,(H,24,25)(H,26,27)(H2,18,19,20)(H2,21,22,23)(H3,11,13,14,17)/t3-,5-,6-,9-/m1/s1"  
G4P  InChIKey          InChI                 1.03   BUFLLCUFNHESEH-UUOKFMHZSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
G4P  "SYSTEMATIC NAME"  ACDLabs               10.04  "guanosine 3',5'-bis(trihydrogen diphosphate)"  
G4P  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-4-hydroxy-3-(hydroxy-phosphonooxy-phosphoryl)oxy-oxolan-2-yl]methyl phosphono hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
G4P  "Create component"   2002-05-16  RCSB  
G4P  "Modify descriptor"  2011-06-04  RCSB  
G4P  "Modify synonyms"    2020-06-24  PDBE  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  G4P  "guanosine tetraphosphate"  ?  ?  
2  G4P  ppGpp                       ?  ?  
##
