data_D9P
# 
_chem_comp.id                                    D9P 
_chem_comp.name                                  1-desthiobiotinylpyrene 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H26 N2 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-03-15 
_chem_comp.pdbx_modified_date                    2016-10-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        398.497 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     D9P 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5IRW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
D9P O11 O1  O 0 1 N N N 17.703 -3.989 28.974 0.484  -1.240 -0.641 O11 D9P 1  
D9P C11 C1  C 0 1 N N N 18.438 -3.781 29.936 0.560  -0.069 -0.356 C11 D9P 2  
D9P C10 C2  C 0 1 N N N 18.220 -2.533 30.808 -0.694 0.756  -0.221 C10 D9P 3  
D9P C9  C3  C 0 1 N N N 17.789 -1.392 29.868 -1.915 -0.124 -0.495 C9  D9P 4  
D9P C8  C4  C 0 1 N N N 16.305 -1.128 29.682 -3.188 0.714  -0.359 C8  D9P 5  
D9P C7  C5  C 0 1 N N N 15.883 -0.994 28.229 -4.410 -0.166 -0.632 C7  D9P 6  
D9P C2  C6  C 0 1 N N N 15.760 0.413  27.747 -5.682 0.672  -0.496 C2  D9P 7  
D9P C4  C7  C 0 1 N N R 14.465 0.700  26.990 -6.904 -0.208 -0.769 C4  D9P 8  
D9P C5  C8  C 0 1 N N S 14.546 1.816  25.949 -8.201 0.618  -0.660 C5  D9P 9  
D9P C6  C9  C 0 1 N N N 15.695 2.795  26.109 -7.883 2.073  -0.311 C6  D9P 10 
D9P N1  N1  N 0 1 N N N 13.254 2.452  26.132 -8.938 -0.027 0.436  N1  D9P 11 
D9P N2  N2  N 0 1 N N N 13.469 1.226  27.905 -7.048 -1.230 0.277  N2  D9P 12 
D9P C3  C10 C 0 1 N N N 12.694 2.154  27.327 -8.219 -1.055 0.905  C3  D9P 13 
D9P O3  O2  O 0 1 N N N 11.678 2.626  27.806 -8.594 -1.766 1.817  O3  D9P 14 
D9P C1  C11 C 0 1 Y N N 19.465 -4.820 30.298 1.877  0.551  -0.133 C1  D9P 15 
D9P C16 C12 C 0 1 Y N N 20.448 -5.195 29.439 3.099  -0.274 -0.141 C16 D9P 16 
D9P C15 C13 C 0 1 Y N N 21.288 -6.287 29.848 4.386  0.409  0.088  C15 D9P 17 
D9P C17 C14 C 0 1 Y N N 20.734 -4.605 28.242 3.076  -1.570 -0.342 C17 D9P 18 
D9P C18 C15 C 0 1 Y N N 21.813 -5.059 27.471 4.337  -2.341 -0.338 C18 D9P 19 
D9P C19 C16 C 0 1 Y N N 22.644 -6.124 27.817 5.480  -1.729 -0.133 C19 D9P 20 
D9P C20 C17 C 0 1 Y N N 22.365 -6.731 29.050 5.499  -0.271 0.091  C20 D9P 21 
D9P C24 C18 C 0 1 Y N N 23.729 -6.574 27.008 6.770  -2.439 -0.118 C24 D9P 22 
D9P C25 C19 C 0 1 Y N N 24.550 -7.591 27.422 7.878  -1.761 0.092  C25 D9P 23 
D9P C26 C20 C 0 1 Y N N 24.263 -8.211 28.649 7.891  -0.310 0.316  C26 D9P 24 
D9P C21 C21 C 0 1 Y N N 23.187 -7.799 29.463 6.790  0.404  0.319  C21 D9P 25 
D9P C22 C22 C 0 1 Y N N 22.936 -8.436 30.688 6.808  1.859  0.543  C22 D9P 26 
D9P C23 C23 C 0 1 Y N N 21.897 -8.020 31.483 5.682  2.547  0.539  C23 D9P 27 
D9P C14 C24 C 0 1 Y N N 21.066 -6.953 31.085 4.397  1.866  0.312  C14 D9P 28 
D9P C13 C25 C 0 1 Y N N 20.002 -6.562 31.903 3.259  2.521  0.302  C13 D9P 29 
D9P C12 C26 C 0 1 Y N N 19.203 -5.531 31.494 1.976  1.847  0.069  C12 D9P 30 
D9P H1  H1  H 0 1 N N N 19.154 -2.265 31.323 -0.756 1.160  0.789  H1  D9P 31 
D9P H2  H2  H 0 1 N N N 17.433 -2.726 31.552 -0.668 1.575  -0.940 H2  D9P 32 
D9P H3  H3  H 0 1 N N N 18.206 -1.614 28.875 -1.853 -0.528 -1.505 H3  D9P 33 
D9P H4  H4  H 0 1 N N N 18.238 -0.465 30.255 -1.941 -0.943 0.223  H4  D9P 34 
D9P H5  H5  H 0 1 N N N 16.051 -0.194 30.204 -3.250 1.118  0.652  H5  D9P 35 
D9P H6  H6  H 0 1 N N N 15.746 -1.962 30.130 -3.162 1.533  -1.077 H6  D9P 36 
D9P H7  H7  H 0 1 N N N 14.906 -1.485 28.108 -4.347 -0.570 -1.643 H7  D9P 37 
D9P H8  H8  H 0 1 N N N 16.630 -1.507 27.606 -4.435 -0.985 0.086  H8  D9P 38 
D9P H9  H9  H 0 1 N N N 16.606 0.624  27.077 -5.745 1.076  0.515  H9  D9P 39 
D9P H10 H10 H 0 1 N N N 15.807 1.082  28.619 -5.657 1.492  -1.214 H10 D9P 40 
D9P H11 H11 H 0 1 N N N 14.104 -0.223 26.513 -6.826 -0.674 -1.752 H11 D9P 41 
D9P H12 H12 H 0 1 N N N 14.600 1.363  24.948 -8.768 0.564  -1.590 H12 D9P 42 
D9P H13 H13 H 0 1 N N N 16.649 2.268  25.962 -7.295 2.106  0.606  H13 D9P 43 
D9P H14 H14 H 0 1 N N N 15.600 3.597  25.362 -7.315 2.526  -1.123 H14 D9P 44 
D9P H15 H15 H 0 1 N N N 15.668 3.230  27.119 -8.812 2.624  -0.167 H15 D9P 45 
D9P H16 H16 H 0 1 N N N 12.825 3.045  25.450 -9.807 0.248  0.767  H16 D9P 46 
D9P H17 H17 H 0 1 N N N 13.372 0.931  28.855 -6.399 -1.922 0.481  H17 D9P 47 
D9P H18 H18 H 0 1 N N N 20.127 -3.785 27.888 2.136  -2.074 -0.509 H18 D9P 48 
D9P H19 H19 H 0 1 N N N 22.015 -4.547 26.542 4.319  -3.408 -0.503 H19 D9P 49 
D9P H20 H20 H 0 1 N N N 23.907 -6.105 26.052 6.807  -3.507 -0.278 H20 D9P 50 
D9P H21 H21 H 0 1 N N N 25.392 -7.906 26.823 8.817  -2.294 0.101  H21 D9P 51 
D9P H22 H22 H 0 1 N N N 24.886 -9.029 28.980 8.836  0.186  0.483  H22 D9P 52 
D9P H23 H23 H 0 1 N N N 23.562 -9.256 31.006 7.747  2.365  0.711  H23 D9P 53 
D9P H24 H24 H 0 1 N N N 21.714 -8.516 32.425 5.704  3.614  0.705  H24 D9P 54 
D9P H25 H25 H 0 1 N N N 19.815 -7.065 32.840 3.269  3.589  0.466  H25 D9P 55 
D9P H26 H26 H 0 1 N N N 18.352 -5.252 32.097 1.073  2.441  0.068  H26 D9P 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
D9P C5  C6  SING N N 1  
D9P C5  N1  SING N N 2  
D9P C5  C4  SING N N 3  
D9P N1  C3  SING N N 4  
D9P C4  C2  SING N N 5  
D9P C4  N2  SING N N 6  
D9P C24 C25 DOUB Y N 7  
D9P C24 C19 SING Y N 8  
D9P C3  O3  DOUB N N 9  
D9P C3  N2  SING N N 10 
D9P C25 C26 SING Y N 11 
D9P C18 C19 DOUB Y N 12 
D9P C18 C17 SING Y N 13 
D9P C2  C7  SING N N 14 
D9P C19 C20 SING Y N 15 
D9P C7  C8  SING N N 16 
D9P C17 C16 DOUB Y N 17 
D9P C26 C21 DOUB Y N 18 
D9P O11 C11 DOUB N N 19 
D9P C20 C21 SING Y N 20 
D9P C20 C15 DOUB Y N 21 
D9P C16 C15 SING Y N 22 
D9P C16 C1  SING Y N 23 
D9P C21 C22 SING Y N 24 
D9P C8  C9  SING N N 25 
D9P C15 C14 SING Y N 26 
D9P C9  C10 SING N N 27 
D9P C11 C1  SING N N 28 
D9P C11 C10 SING N N 29 
D9P C1  C12 DOUB Y N 30 
D9P C22 C23 DOUB Y N 31 
D9P C14 C23 SING Y N 32 
D9P C14 C13 DOUB Y N 33 
D9P C12 C13 SING Y N 34 
D9P C10 H1  SING N N 35 
D9P C10 H2  SING N N 36 
D9P C9  H3  SING N N 37 
D9P C9  H4  SING N N 38 
D9P C8  H5  SING N N 39 
D9P C8  H6  SING N N 40 
D9P C7  H7  SING N N 41 
D9P C7  H8  SING N N 42 
D9P C2  H9  SING N N 43 
D9P C2  H10 SING N N 44 
D9P C4  H11 SING N N 45 
D9P C5  H12 SING N N 46 
D9P C6  H13 SING N N 47 
D9P C6  H14 SING N N 48 
D9P C6  H15 SING N N 49 
D9P N1  H16 SING N N 50 
D9P N2  H17 SING N N 51 
D9P C17 H18 SING N N 52 
D9P C18 H19 SING N N 53 
D9P C24 H20 SING N N 54 
D9P C25 H21 SING N N 55 
D9P C26 H22 SING N N 56 
D9P C22 H23 SING N N 57 
D9P C23 H24 SING N N 58 
D9P C13 H25 SING N N 59 
D9P C12 H26 SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
D9P SMILES           ACDLabs              12.01 "O=C(c1ccc4c2c1ccc3c2c(ccc3)cc4)CCCCCC5NC(NC5C)=O"                                                                                                                               
D9P InChI            InChI                1.03  "InChI=1S/C26H26N2O2/c1-16-22(28-26(30)27-16)8-3-2-4-9-23(29)20-14-12-19-11-10-17-6-5-7-18-13-15-21(20)25(19)24(17)18/h5-7,10-16,22H,2-4,8-9H2,1H3,(H2,27,28,30)/t16-,22+/m0/s1" 
D9P InChIKey         InChI                1.03  GEJQOLRONNVYHQ-KSFYIVLOSA-N                                                                                                                                                      
D9P SMILES_CANONICAL CACTVS               3.385 "C[C@@H]1NC(=O)N[C@@H]1CCCCCC(=O)c2ccc3ccc4cccc5ccc2c3c45"                                                                                                                       
D9P SMILES           CACTVS               3.385 "C[CH]1NC(=O)N[CH]1CCCCCC(=O)c2ccc3ccc4cccc5ccc2c3c45"                                                                                                                           
D9P SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "C[C@H]1[C@H](NC(=O)N1)CCCCCC(=O)c2ccc3ccc4cccc5c4c3c2cc5"                                                                                                                       
D9P SMILES           "OpenEye OEToolkits" 2.0.4 "CC1C(NC(=O)N1)CCCCCC(=O)c2ccc3ccc4cccc5c4c3c2cc5"                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
D9P "SYSTEMATIC NAME" ACDLabs              12.01 "(4S,5R)-4-methyl-5-[6-oxo-6-(pyren-1-yl)hexyl]imidazolidin-2-one"                
D9P "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(4~{S},5~{R})-4-methyl-5-(6-oxidanylidene-6-pyren-1-yl-hexyl)imidazolidin-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
D9P "Create component"   2016-03-15 EBI  
D9P "Other modification" 2016-03-15 EBI  
D9P "Other modification" 2016-03-21 EBI  
D9P "Initial release"    2016-10-12 RCSB 
# 
