data_D6P
#

_chem_comp.id                                   D6P
_chem_comp.name                                 "(3,4,5,7-TETRAHYDROXY-HEPT-1-ENYL)-PHOSPHONIC ACID"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C7 H15 O7 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "2-DEOXY-D-GLUCITOL 6-(E)-VINYLHOMOPHOSPHONATE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2003-12-03
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       242.164
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    D6P
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1RM0
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
D6P  C1   C1   C  0  1  N  N  N  -10.032  41.398   5.501   0.004  -0.493   5.127  C1   D6P   1  
D6P  C2   C2   C  0  1  N  N  N  -11.445  41.142   6.083   0.653  -0.316   3.753  C2   D6P   2  
D6P  C3   C3   C  0  1  N  N  R  -11.454  41.088   7.623  -0.432  -0.081   2.702  C3   D6P   3  
D6P  C4   C4   C  0  1  N  N  S  -11.088  39.629   7.998   0.216   0.095   1.328  C4   D6P   4  
D6P  C5   C5   C  0  1  N  N  R  -10.852  39.520   9.525  -0.869   0.331   0.277  C5   D6P   5  
D6P  C6   C6   C  0  1  N  N  N   -9.941  38.438   9.653  -0.230   0.505  -1.076  C6   D6P   6  
D6P  O1   O1   O  0  1  N  N  N   -9.201  40.274   5.711   1.019  -0.713   6.109  O1   D6P   7  
D6P  O3   O3   O  0  1  N  N  N  -12.713  41.449   8.126  -1.171   1.096   3.035  O3   D6P   8  
D6P  O4   O4   O  0  1  N  N  N  -12.158  38.813   7.602   1.099   1.218   1.360  O4   D6P   9  
D6P  O5   O5   O  0  1  N  N  N  -10.315  40.738   9.975  -1.753  -0.792   0.245  O5   D6P  10  
D6P  C7   C7   C  0  1  N  N  N  -10.069  37.646  10.698  -0.525  -0.318  -2.051  C7   D6P  11  
D6P  P    P    P  0  1  N  N  N   -9.114  36.527  10.817   0.244  -0.108  -3.680  P    D6P  12  
D6P  O1P  O1P  O  0  1  N  N  N   -9.301  35.880  12.286   1.076  -1.434  -4.055  O1P  D6P  13  
D6P  O2P  O2P  O  0  1  N  N  N   -9.447  35.476   9.644  -0.899   0.139  -4.786  O2P  D6P  14  
D6P  O3P  O3P  O  0  1  N  N  N   -7.631  37.110  10.631   1.159   1.055  -3.647  O3P  D6P  15  
D6P  H11  1H1  H  0  1  N  N  N  -10.072  41.689   4.425  -0.669  -1.350   5.103  H11  D6P  16  
D6P  H12  2H1  H  0  1  N  N  N   -9.578  42.331   5.908  -0.558   0.404   5.381  H12  D6P  17  
D6P  H21  1H2  H  0  1  N  N  N  -12.175  41.894   5.705   1.327   0.540   3.777  H21  D6P  18  
D6P  H22  2H2  H  0  1  N  N  N  -11.895  40.219   5.648   1.216  -1.214   3.499  H22  D6P  19  
D6P  H3   H3   H  0  1  N  N  N  -10.726  41.807   8.065  -1.106  -0.937   2.678  H3   D6P  20  
D6P  H4   H4   H  0  1  N  N  N  -10.150  39.308   7.486   0.779  -0.802   1.074  H4   D6P  21  
D6P  H5   H5   H  0  1  N  N  N  -11.769  39.335  10.131  -1.433   1.229   0.531  H5   D6P  22  
D6P  H6   H6   H  0  1  N  N  N   -9.131  38.212   8.938   0.471   1.309  -1.242  H6   D6P  23  
D6P  HO1  HO1  H  0  1  N  N  N   -8.334  40.431   5.354   0.568  -0.819   6.958  HO1  D6P  24  
D6P  HO3  HO3  H  0  1  N  N  N  -12.718  41.415   9.075  -0.539   1.828   3.046  HO3  D6P  25  
D6P  HO4  HO4  H  0  1  N  N  N  -11.933  37.918   7.831   0.562   1.990   1.587  HO4  D6P  26  
D6P  HO5  HO5  H  0  1  N  N  N  -10.170  40.671  10.911  -1.216  -1.563   0.017  HO5  D6P  27  
D6P  H7   H7   H  0  1  N  N  N  -10.886  37.892  11.396  -1.227  -1.121  -1.885  H7   D6P  28  
D6P  H1P  H1P  H  0  1  N  N  N   -8.686  35.159  12.362   1.468  -1.281  -4.926  H1P  D6P  29  
D6P  H2P  H2P  H  0  1  N  N  N   -8.832  34.755   9.720  -1.471  -0.639  -4.775  H2P  D6P  30  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
D6P  C1   C2   SING  N  N   1  
D6P  C1   O1   SING  N  N   2  
D6P  C1   H11  SING  N  N   3  
D6P  C1   H12  SING  N  N   4  
D6P  C2   C3   SING  N  N   5  
D6P  C2   H21  SING  N  N   6  
D6P  C2   H22  SING  N  N   7  
D6P  C3   C4   SING  N  N   8  
D6P  C3   O3   SING  N  N   9  
D6P  C3   H3   SING  N  N  10  
D6P  C4   C5   SING  N  N  11  
D6P  C4   O4   SING  N  N  12  
D6P  C4   H4   SING  N  N  13  
D6P  C5   C6   SING  N  N  14  
D6P  C5   O5   SING  N  N  15  
D6P  C5   H5   SING  N  N  16  
D6P  C6   C7   DOUB  N  E  17  
D6P  C6   H6   SING  N  N  18  
D6P  O1   HO1  SING  N  N  19  
D6P  O3   HO3  SING  N  N  20  
D6P  O4   HO4  SING  N  N  21  
D6P  O5   HO5  SING  N  N  22  
D6P  C7   P    SING  N  N  23  
D6P  C7   H7   SING  N  N  24  
D6P  P    O1P  SING  N  N  25  
D6P  P    O2P  SING  N  N  26  
D6P  P    O3P  DOUB  N  N  27  
D6P  O1P  H1P  SING  N  N  28  
D6P  O2P  H2P  SING  N  N  29  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
D6P  SMILES            ACDLabs               10.04  "O=P(O)(O)/C=C/C(O)C(O)C(O)CCO"  
D6P  SMILES_CANONICAL  CACTVS                3.341  "OCC[C@@H](O)[C@H](O)[C@H](O)\C=C\[P](O)(O)=O"  
D6P  SMILES            CACTVS                3.341  "OCC[CH](O)[CH](O)[CH](O)C=C[P](O)(O)=O"  
D6P  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C(CO)[C@H]([C@@H]([C@@H](\C=C\P(=O)(O)O)O)O)O"  
D6P  SMILES            "OpenEye OEToolkits"  1.5.0  "C(CO)C(C(C(C=CP(=O)(O)O)O)O)O"  
D6P  InChI             InChI                 1.03   "InChI=1S/C7H15O7P/c8-3-1-5(9)7(11)6(10)2-4-15(12,13)14/h2,4-11H,1,3H2,(H2,12,13,14)/b4-2+/t5-,6-,7+/m1/s1"  
D6P  InChIKey          InChI                 1.03   CZQSGBWQBMZTMQ-AEVYZNAZSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
D6P  "SYSTEMATIC NAME"  ACDLabs               10.04  "(6E)-2,6,7-trideoxy-7-phosphono-D-arabino-hept-6-enitol"  
D6P  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(E,3R,4S,5R)-3,4,5,7-tetrahydroxyhept-1-enyl]phosphonic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
D6P  "Create component"   2003-12-03  RCSB  
D6P  "Modify descriptor"  2011-06-04  RCSB  
D6P  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     D6P
_pdbx_chem_comp_synonyms.name        "2-DEOXY-D-GLUCITOL 6-(E)-VINYLHOMOPHOSPHONATE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
