data_BKP
# 
_chem_comp.id                                    BKP 
_chem_comp.name                                  "5'-O-[(S)-hydroxy{[(S)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H17 N5 O17 P4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-08-14 
_chem_comp.pdbx_modified_date                    2019-01-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        603.160 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     BKP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6ANH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
BKP PB    P1  P 0 1 N N N 6.996  17.541 -15.748 3.730  -1.813 -0.446 PB    BKP 1  
BKP O1B   O1  O 0 1 N N N 8.256  16.685 -15.750 3.641  -1.571 -1.904 O1B   BKP 2  
BKP O2B   O2  O 0 1 N N N 6.709  17.821 -14.305 4.688  -3.078 -0.170 O2B   BKP 3  
BKP O3B   O3  O 0 1 N N N 7.328  18.895 -16.624 4.339  -0.511 0.278  O3B   BKP 4  
BKP O3A   O4  O 0 1 N N N 5.750  16.620 -16.332 2.261  -2.115 0.138  O3A   BKP 5  
BKP PA    P2  P 0 1 N N N 6.016  15.265 -17.218 1.032  -3.036 -0.345 PA    BKP 6  
BKP O1A   O5  O 0 1 N N N 6.183  15.743 -18.670 0.895  -2.943 -1.816 O1A   BKP 7  
BKP O2A   O6  O 0 1 N N N 7.137  14.389 -16.624 1.311  -4.565 0.073  O2A   BKP 8  
BKP "O5'" O7  O 0 1 N N N 4.777  14.206 -17.098 -0.326 -2.528 0.354  "O5'" BKP 9  
BKP "C5'" C1  C 0 1 N N N 3.643  14.433 -16.326 -1.611 -3.075 0.048  "C5'" BKP 10 
BKP "C4'" C2  C 0 1 N N R 2.592  14.399 -17.344 -2.678 -2.369 0.886  "C4'" BKP 11 
BKP "O4'" O8  O 0 1 N N N 1.720  13.669 -16.479 -2.784 -0.993 0.485  "O4'" BKP 12 
BKP "C3'" C3  C 0 1 N N S 1.949  15.740 -17.639 -4.052 -3.024 0.644  "C3'" BKP 13 
BKP "O3'" O9  O 0 1 N N N 1.667  15.866 -19.016 -4.580 -3.545 1.865  "O3'" BKP 14 
BKP "C2'" C4  C 0 1 N N R 0.572  15.745 -16.879 -4.937 -1.867 0.121  "C2'" BKP 15 
BKP "O2'" O10 O 0 1 N N N -0.511 16.291 -17.733 -6.246 -1.928 0.692  "O2'" BKP 16 
BKP "C1'" C5  C 0 1 N N R 0.246  14.311 -16.836 -4.171 -0.618 0.627  "C1'" BKP 17 
BKP N9    N1  N 0 1 Y N N -0.727 14.142 -15.617 -4.478 0.548  -0.205 N9    BKP 18 
BKP C8    C6  C 0 1 Y N N -0.692 14.310 -14.299 -3.749 0.994  -1.268 C8    BKP 19 
BKP N7    N2  N 0 1 Y N N -1.861 13.975 -13.782 -4.316 2.053  -1.772 N7    BKP 20 
BKP C5    C7  C 0 1 Y N N -2.668 13.588 -14.772 -5.432 2.339  -1.062 C5    BKP 21 
BKP C6    C8  C 0 1 N N N -4.008 13.127 -14.820 -6.462 3.379  -1.141 C6    BKP 22 
BKP O6    O11 O 0 1 N N N -4.777 12.984 -13.685 -6.411 4.242  -2.003 O6    BKP 23 
BKP N1    N3  N 0 1 N N N -4.523 12.790 -15.991 -7.463 3.362  -0.246 N1    BKP 24 
BKP C2    C9  C 0 1 N N N -3.819 12.881 -17.113 -7.530 2.438  0.688  C2    BKP 25 
BKP N2    N4  N 0 1 N N N -4.515 12.478 -18.319 -8.574 2.471  1.573  N2    BKP 26 
BKP N3    N5  N 0 1 N N N -2.543 13.356 -17.133 -6.604 1.451  0.807  N3    BKP 27 
BKP C4    C10 C 0 1 Y N N -1.945 13.700 -15.970 -5.546 1.380  -0.063 C4    BKP 28 
BKP PD    P3  P 0 1 N N N 9.498  21.657 -14.592 5.929  3.347  0.726  PD    BKP 29 
BKP PG    P4  P 0 1 N N N 8.822  19.667 -16.600 5.512  0.529  -0.092 PG    BKP 30 
BKP O1G   O12 O 0 1 N N N 9.989  18.853 -16.123 6.943  -0.166 0.154  O1G   BKP 31 
BKP O2G   O13 O 0 1 N N N 9.186  20.248 -17.950 5.392  0.922  -1.514 O2G   BKP 32 
BKP O3G   O14 O 0 1 N N N 8.487  20.923 -15.590 5.383  1.837  0.838  O3G   BKP 33 
BKP O4A   O15 O 0 1 N N N 10.720 22.111 -15.376 5.709  3.851  -0.648 O4A   BKP 34 
BKP O4B   O16 O 0 1 N N N 9.808  20.648 -13.506 5.140  4.282  1.773  O4B   BKP 35 
BKP O4G   O17 O 0 1 N N N 8.710  22.868 -14.072 7.503  3.375  1.063  O4G   BKP 36 
BKP H1    H1  H 0 1 N N N 7.369  17.404 -13.764 4.792  -3.295 0.767  H1    BKP 37 
BKP H2    H2  H 0 1 N N N 7.816  14.258 -17.275 1.412  -4.701 1.025  H2    BKP 38 
BKP H3    H3  H 0 1 N N N 3.686  15.411 -15.824 -1.825 -2.930 -1.010 H3    BKP 39 
BKP H4    H4  H 0 1 N N N 3.502  13.642 -15.575 -1.615 -4.141 0.277  H4    BKP 40 
BKP H5    H5  H 0 1 N N N 2.880  13.856 -18.256 -2.419 -2.428 1.943  H5    BKP 41 
BKP H6    H6  H 0 1 N N N 2.581  16.561 -17.269 -3.973 -3.812 -0.105 H6    BKP 42 
BKP H7    H7  H 0 1 N N N 1.265  16.711 -19.181 -5.444 -3.969 1.771  H7    BKP 43 
BKP H8    H8  H 0 1 N N N 0.640  16.220 -15.889 -4.988 -1.877 -0.968 H8    BKP 44 
BKP H9    H9  H 0 1 N N N -1.330 16.283 -17.251 -6.732 -2.736 0.477  H9    BKP 45 
BKP H10   H10 H 0 1 N N N -0.163 13.905 -17.773 -4.410 -0.419 1.672  H10   BKP 46 
BKP H11   H11 H 0 1 N N N 0.160  14.665 -13.738 -2.841 0.540  -1.635 H11   BKP 47 
BKP H12   H12 H 0 1 N N N -5.461 12.159 -18.267 -9.246 3.168  1.504  H12   BKP 48 
BKP H13   H13 H 0 1 N N N -4.049 12.519 -19.203 -8.642 1.799  2.269  H13   BKP 49 
BKP H14   H14 H 0 1 N N N -2.053 13.450 -18.000 -6.694 0.790  1.511  H14   BKP 50 
BKP H15   H15 H 0 1 N N N 10.684 18.886 -16.769 7.090  -0.449 1.067  H15   BKP 51 
BKP H16   H16 H 0 1 N N N 10.740 20.465 -13.500 5.418  5.208  1.761  H16   BKP 52 
BKP H17   H17 H 0 1 N N N 9.143  23.669 -14.344 7.721  3.057  1.949  H17   BKP 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
BKP "O3'" "C3'" SING N N 1  
BKP O1A   PA    DOUB N N 2  
BKP N2    C2    SING N N 3  
BKP O2G   PG    DOUB N N 4  
BKP "O2'" "C2'" SING N N 5  
BKP "C3'" "C4'" SING N N 6  
BKP "C3'" "C2'" SING N N 7  
BKP "C4'" "O4'" SING N N 8  
BKP "C4'" "C5'" SING N N 9  
BKP PA    "O5'" SING N N 10 
BKP PA    O2A   SING N N 11 
BKP PA    O3A   SING N N 12 
BKP N3    C2    SING N N 13 
BKP N3    C4    SING N N 14 
BKP C2    N1    DOUB N N 15 
BKP "O5'" "C5'" SING N N 16 
BKP "C2'" "C1'" SING N N 17 
BKP "C1'" "O4'" SING N N 18 
BKP "C1'" N9    SING N N 19 
BKP O3B   PG    SING N N 20 
BKP O3B   PB    SING N N 21 
BKP PG    O1G   SING N N 22 
BKP PG    O3G   SING N N 23 
BKP O3A   PB    SING N N 24 
BKP N1    C6    SING N N 25 
BKP C4    N9    SING Y N 26 
BKP C4    C5    DOUB Y N 27 
BKP O1B   PB    DOUB N N 28 
BKP PB    O2B   SING N N 29 
BKP N9    C8    SING Y N 30 
BKP O3G   PD    SING N N 31 
BKP O4A   PD    DOUB N N 32 
BKP C6    C5    SING N N 33 
BKP C6    O6    DOUB N N 34 
BKP C5    N7    SING Y N 35 
BKP PD    O4G   SING N N 36 
BKP PD    O4B   SING N N 37 
BKP C8    N7    DOUB Y N 38 
BKP O2B   H1    SING N N 39 
BKP O2A   H2    SING N N 40 
BKP "C5'" H3    SING N N 41 
BKP "C5'" H4    SING N N 42 
BKP "C4'" H5    SING N N 43 
BKP "C3'" H6    SING N N 44 
BKP "O3'" H7    SING N N 45 
BKP "C2'" H8    SING N N 46 
BKP "O2'" H9    SING N N 47 
BKP "C1'" H10   SING N N 48 
BKP C8    H11   SING N N 49 
BKP N2    H12   SING N N 50 
BKP N2    H13   SING N N 51 
BKP N3    H14   SING N N 52 
BKP O1G   H15   SING N N 53 
BKP O4B   H16   SING N N 54 
BKP O4G   H17   SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
BKP SMILES           ACDLabs              12.01 "P(O)(=O)(OP(O)(OP(O)(O)=O)=O)OP(OCC1OC(C(C1O)O)n2cnc3C(=O)N=C(N)Nc23)(O)=O" 
BKP InChI            InChI                1.03  
"InChI=1S/C10H17N5O17P4/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(29-9)1-28-34(22,23)31-36(26,27)32-35(24,25)30-33(19,20)21/h2-3,5-6,9,16-17H,1H2,(H,22,23)(H,24,25)(H,26,27)(H2,19,20,21)(H3,11,13,14,18)/t3-,5-,6-,9-/m1/s1" 
BKP InChIKey         InChI                1.03  KDFXXNGTULMGMF-UUOKFMHZSA-N 
BKP SMILES_CANONICAL CACTVS               3.385 "NC1=NC(=O)c2ncn([C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O)c2N1" 
BKP SMILES           CACTVS               3.385 "NC1=NC(=O)c2ncn([CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O)c2N1" 
BKP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)NC(=NC2=O)N" 
BKP SMILES           "OpenEye OEToolkits" 2.0.6 "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)NC(=NC2=O)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
BKP "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-[(S)-hydroxy{[(S)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]oxy}phosphoryl]guanosine"                                                                               
BKP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [oxidanyl(phosphonooxy)phosphoryl] hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
BKP "Create component" 2017-08-14 RCSB 
BKP "Initial release"  2019-01-16 RCSB 
# 
