data_A8P
# 
_chem_comp.id                                    A8P 
_chem_comp.name                                  "8-n-octylamino-adenosine diphosphate hydroxypyrrolidinediol" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H42 N7 O12 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2012-07-10 
_chem_comp.pdbx_modified_date                    2014-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        670.567 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A8P 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4A1I 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A8P C1   C1   C 0 1 N N N 32.351 -4.117 -2.393 11.396 6.712  -2.100 C1   A8P 1  
A8P C2   C2   C 0 1 N N N 33.276 -3.111 -1.741 10.820 5.850  -0.975 C2   A8P 2  
A8P C3   C3   C 0 1 N N N 33.019 -1.627 -2.049 9.686  4.984  -1.526 C3   A8P 3  
A8P C4   C4   C 0 1 N N N 31.569 -1.150 -2.046 9.109  4.122  -0.401 C4   A8P 4  
A8P C5   C5   C 0 1 N N N 31.171 -0.094 -0.983 7.975  3.256  -0.951 C5   A8P 5  
A8P C6   C6   C 0 1 N N N 29.863 0.577  -1.360 7.399  2.394  0.174  C6   A8P 6  
A8P C7   C7   C 0 1 N N N 28.855 0.905  -0.292 6.264  1.528  -0.377 C7   A8P 7  
A8P C8   C8   C 0 1 N N N 27.648 0.034  -0.363 5.688  0.666  0.748  C8   A8P 8  
A8P N9   N9   N 0 1 N N N 27.711 -1.155 0.047  4.602  -0.163 0.221  N9   A8P 9  
A8P C10  C10  C 0 1 Y N N 26.682 -1.963 -0.272 3.926  -1.029 1.057  C10  A8P 10 
A8P N11  N11  N 0 1 Y N N 25.514 -1.650 -0.784 4.168  -1.185 2.334  N11  A8P 11 
A8P C12  C12  C 0 1 Y N N 24.857 -2.856 -0.922 3.319  -2.113 2.844  C12  A8P 12 
A8P C13  C13  C 0 1 Y N N 23.559 -3.175 -1.390 3.119  -2.672 4.116  C13  A8P 13 
A8P N14  N14  N 0 1 Y N N 23.205 -4.472 -1.374 2.166  -3.587 4.264  N14  A8P 14 
A8P C15  C15  C 0 1 Y N N 24.091 -5.353 -0.933 1.421  -3.968 3.243  C15  A8P 15 
A8P N16  N16  N 0 1 Y N N 25.323 -5.179 -0.470 1.573  -3.472 2.033  N16  A8P 16 
A8P C17  C17  C 0 1 Y N N 25.650 -3.896 -0.492 2.500  -2.551 1.790  C17  A8P 17 
A8P N18  N18  N 0 1 Y N N 26.838 -3.323 -0.082 2.899  -1.849 0.677  N18  A8P 18 
A8P C19  C19  C 0 1 N N R 27.986 -4.050 0.489  2.331  -1.960 -0.669 C19  A8P 19 
A8P C20  C20  C 0 1 N N R 29.377 -3.818 -0.112 2.734  -3.305 -1.313 C20  A8P 20 
A8P C21  C21  C 0 1 N N S 30.082 -3.101 1.055  1.480  -3.731 -2.109 C21  A8P 21 
A8P C22  C22  C 0 1 N N R 29.406 -3.671 2.285  0.468  -2.593 -1.852 C22  A8P 22 
A8P O23  O23  O 0 1 N N N 28.043 -3.793 1.874  0.889  -2.000 -0.604 O23  A8P 23 
A8P C24  C24  C 0 1 N N N 29.447 -2.838 3.530  -0.948 -3.159 -1.722 C24  A8P 24 
A8P O25  O25  O 0 1 N N N 28.901 -1.547 3.256  -1.881 -2.083 -1.601 O25  A8P 25 
A8P P26  P26  P 0 1 N N N 29.143 -0.346 4.241  -3.467 -2.312 -1.446 P26  A8P 26 
A8P O27  O27  O 0 1 N N N 30.545 0.138  4.207  -4.045 -2.990 -2.787 O27  A8P 27 
A8P O28  O28  O 0 1 N N N 28.083 0.728  4.005  -3.727 -3.202 -0.292 O28  A8P 28 
A8P O29  O29  O 0 1 N N N 28.738 -1.042 5.613  -4.193 -0.896 -1.205 O29  A8P 29 
A8P P30  P30  P 0 1 N N N 29.417 -1.128 7.052  -5.616 -0.458 -0.593 P30  A8P 30 
A8P O31  O31  O 0 1 N N N 28.535 -1.853 8.003  -6.779 -0.769 -1.662 O31  A8P 31 
A8P O32  O32  O 0 1 N N N 30.824 -1.714 6.892  -5.873 -1.218 0.651  O32  A8P 32 
A8P O33  O33  O 0 1 N N N 29.515 0.402  7.435  -5.597 1.118  -0.264 O33  A8P 33 
A8P C34  C34  C 0 1 N N N 28.654 0.967  8.450  -6.677 1.791  0.386  C34  A8P 34 
A8P C35  C35  C 0 1 N N R 28.821 2.460  8.435  -6.334 3.274  0.543  C35  A8P 35 
A8P C36  C36  C 0 1 N N R 27.844 3.199  9.351  -7.431 3.997  1.354  C36  A8P 36 
A8P C37  C37  C 0 1 N N S 26.700 3.563  8.408  -7.564 5.386  0.697  C37  A8P 37 
A8P C38  C38  C 0 1 N N N 27.501 4.053  7.205  -6.537 5.386  -0.455 C38  A8P 38 
A8P N39  N39  N 1 1 N N N 28.557 3.021  7.097  -6.340 3.949  -0.780 N39  A8P 39 
A8P O40  O40  O 0 1 N N N 25.852 4.598  8.899  -7.251 6.413  1.640  O40  A8P 40 
A8P O41  O41  O 0 1 N N N 28.414 4.407  9.914  -7.032 4.130  2.720  O41  A8P 41 
A8P O42  O42  O 0 1 N N N 31.470 -3.377 1.143  1.781  -3.828 -3.503 O42  A8P 42 
A8P O43  O43  O 0 1 N N N 30.041 -5.038 -0.450 3.848  -3.126 -2.191 O43  A8P 43 
A8P N44  N44  N 0 1 N N N 22.670 -2.266 -1.848 3.897  -2.278 5.193  N44  A8P 44 
A8P H1   H1   H 0 1 N N N 32.643 -5.134 -2.091 12.205 7.329  -1.708 H1   A8P 45 
A8P H1A  H1A  H 0 1 N N N 31.316 -3.923 -2.075 11.782 6.068  -2.890 H1A  A8P 46 
A8P H2   H2   H 0 1 N N N 33.196 -3.243 -0.652 11.603 5.209  -0.571 H2   A8P 47 
A8P H3   H3   H 0 1 N N N 33.563 -1.035 -1.298 8.902  5.625  -1.930 H3   A8P 48 
A8P H3A  H3A  H 0 1 N N N 33.432 -1.421 -3.047 10.071 4.340  -2.316 H3A  A8P 49 
A8P H4   H4   H 0 1 N N N 31.361 -0.717 -3.036 9.893  3.481  0.003  H4   A8P 50 
A8P H4A  H4A  H 0 1 N N N 30.931 -2.032 -1.890 8.724  4.766  0.389  H4A  A8P 51 
A8P H5   H5   H 0 1 N N N 31.055 -0.589 -0.007 7.192  3.897  -1.355 H5   A8P 52 
A8P H5A  H5A  H 0 1 N N N 31.962 0.668  -0.916 8.361  2.612  -1.742 H5A  A8P 53 
A8P H6   H6   H 0 1 N N N 30.122 1.525  -1.855 8.182  1.753  0.578  H6   A8P 54 
A8P H6A  H6A  H 0 1 N N N 29.360 -0.087 -2.079 7.013  3.038  0.964  H6A  A8P 55 
A8P H7   H7   H 0 1 N N N 29.328 0.774  0.692  5.481  2.169  -0.781 H7   A8P 56 
A8P H7A  H7A  H 0 1 N N N 28.542 1.953  -0.412 6.650  0.884  -1.167 H7A  A8P 57 
A8P H81  H81  H 0 1 N N N 26.861 0.532  0.222  6.471  0.025  1.152  H81  A8P 58 
A8P H15  H15  H 0 1 N N N 23.757 -6.380 -0.954 0.658  -4.715 3.407  H15  A8P 59 
A8P H19  H19  H 0 1 N N N 27.775 -5.122 0.361  2.660  -1.127 -1.289 H19  A8P 60 
A8P H20  H20  H 0 1 N N N 29.306 -3.144 -0.978 2.967  -4.042 -0.544 H20  A8P 61 
A8P H21  H21  H 0 1 N N N 29.892 -2.019 0.991  1.095  -4.680 -1.736 H21  A8P 62 
A8P H22  H22  H 0 1 N N N 29.829 -4.664 2.499  0.510  -1.859 -2.656 H22  A8P 63 
A8P H24  H24  H 0 1 N N N 28.855 -3.327 4.318  -1.186 -3.749 -2.607 H24  A8P 64 
A8P H24A H24A H 0 0 N N N 30.489 -2.732 3.866  -1.006 -3.792 -0.837 H24A A8P 65 
A8P HO27 HO27 H 0 0 N N N 30.554 1.073  4.037  -3.910 -2.461 -3.585 HO27 A8P 66 
A8P HO31 HO31 H 0 0 N N N 29.005 -2.591 8.372  -6.675 -0.303 -2.503 HO31 A8P 67 
A8P H34  H34  H 0 1 N N N 27.607 0.708  8.235  -7.582 1.689  -0.213 H34  A8P 68 
A8P H34A H34A H 0 0 N N N 28.934 0.572  9.437  -6.840 1.350  1.369  H34A A8P 69 
A8P H35  H35  H 0 1 N N N 29.848 2.710  8.740  -5.364 3.390  1.027  H35  A8P 70 
A8P H36  H36  H 0 1 N N N 27.483 2.524  10.141 -8.373 3.453  1.286  H36  A8P 71 
A8P H37  H37  H 0 1 N N N 26.128 2.662  8.141  -8.572 5.526  0.308  H37  A8P 72 
A8P H38  H38  H 0 1 N N N 26.880 4.086  6.298  -6.934 5.919  -1.319 H38  A8P 73 
A8P H38A H38A H 0 0 N N N 27.932 5.048  7.390  -5.599 5.836  -0.129 H38A A8P 74 
A8P H39A H39A H 0 0 N N N 29.393 3.434  6.736  -5.458 3.812  -1.250 H39A A8P 75 
A8P HO40 HO40 H 0 0 N N N 25.166 4.773  8.266  -7.318 7.309  1.283  HO40 A8P 76 
A8P HO41 HO41 H 0 0 N N N 27.773 4.829  10.473 -7.682 4.577  3.278  HO41 A8P 77 
A8P HO42 HO42 H 0 0 N N N 31.841 -2.906 1.880  2.457  -4.487 -3.714 HO42 A8P 78 
A8P HO43 HO43 H 0 0 N N N 30.895 -4.843 -0.817 4.143  -3.940 -2.622 HO43 A8P 79 
A8P HN44 HN44 H 0 0 N N N 21.829 -2.731 -2.123 4.589  -1.609 5.073  HN44 A8P 80 
A8P HN4A HN4A H 0 0 N N N 22.465 -1.607 -1.125 3.749  -2.671 6.067  HN4A A8P 81 
A8P H9   H9   H 0 1 N N N 28.543 -1.561 -0.331 4.357  -0.104 -0.716 H9   A8P 82 
A8P H82  H82  H 0 1 N N N 27.347 -0.009 -1.420 5.302  1.310  1.538  H82  A8P 83 
A8P H1B  H1B  H 0 1 N N N 32.422 -4.025 -3.487 10.613 7.353  -2.504 H1B  A8P 84 
A8P H2A  H2A  H 0 1 N N N 34.301 -3.345 -2.064 10.434 6.495  -0.185 H2A  A8P 85 
A8P H39B H39B H 0 0 N N N 28.252 2.293  6.483  -7.101 3.608  -1.347 H39B A8P 86 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A8P C1  C2   SING N N 1  
A8P C1  H1   SING N N 2  
A8P C1  H1A  SING N N 3  
A8P C3  C2   SING N N 4  
A8P C2  H2   SING N N 5  
A8P C3  C4   SING N N 6  
A8P C3  H3   SING N N 7  
A8P C3  H3A  SING N N 8  
A8P C4  C5   SING N N 9  
A8P C4  H4   SING N N 10 
A8P C4  H4A  SING N N 11 
A8P C6  C5   SING N N 12 
A8P C5  H5   SING N N 13 
A8P C5  H5A  SING N N 14 
A8P C6  C7   SING N N 15 
A8P C6  H6   SING N N 16 
A8P C6  H6A  SING N N 17 
A8P C8  C7   SING N N 18 
A8P C7  H7   SING N N 19 
A8P C7  H7A  SING N N 20 
A8P C8  N9   SING N N 21 
A8P C8  H81  SING N N 22 
A8P C10 N9   SING N N 23 
A8P N11 C10  DOUB Y N 24 
A8P C10 N18  SING Y N 25 
A8P C12 N11  SING Y N 26 
A8P C13 C12  DOUB Y N 27 
A8P C12 C17  SING Y N 28 
A8P N44 C13  SING N N 29 
A8P C13 N14  SING Y N 30 
A8P N14 C15  DOUB Y N 31 
A8P C15 N16  SING Y N 32 
A8P C15 H15  SING N N 33 
A8P C17 N16  DOUB Y N 34 
A8P C17 N18  SING Y N 35 
A8P N18 C19  SING N N 36 
A8P C20 C19  SING N N 37 
A8P C19 O23  SING N N 38 
A8P C19 H19  SING N N 39 
A8P O43 C20  SING N N 40 
A8P C20 C21  SING N N 41 
A8P C20 H20  SING N N 42 
A8P C21 O42  SING N N 43 
A8P C21 C22  SING N N 44 
A8P C21 H21  SING N N 45 
A8P O23 C22  SING N N 46 
A8P C22 C24  SING N N 47 
A8P C22 H22  SING N N 48 
A8P O25 C24  SING N N 49 
A8P C24 H24  SING N N 50 
A8P C24 H24A SING N N 51 
A8P O25 P26  SING N N 52 
A8P O28 P26  DOUB N N 53 
A8P O27 P26  SING N N 54 
A8P P26 O29  SING N N 55 
A8P O27 HO27 SING N N 56 
A8P O29 P30  SING N N 57 
A8P O32 P30  DOUB N N 58 
A8P P30 O33  SING N N 59 
A8P P30 O31  SING N N 60 
A8P O31 HO31 SING N N 61 
A8P O33 C34  SING N N 62 
A8P C35 C34  SING N N 63 
A8P C34 H34  SING N N 64 
A8P C34 H34A SING N N 65 
A8P N39 C35  SING N N 66 
A8P C35 C36  SING N N 67 
A8P C35 H35  SING N N 68 
A8P C37 C36  SING N N 69 
A8P C36 O41  SING N N 70 
A8P C36 H36  SING N N 71 
A8P C38 C37  SING N N 72 
A8P C37 O40  SING N N 73 
A8P C37 H37  SING N N 74 
A8P N39 C38  SING N N 75 
A8P C38 H38  SING N N 76 
A8P C38 H38A SING N N 77 
A8P N39 H39A SING N N 78 
A8P O40 HO40 SING N N 79 
A8P O41 HO41 SING N N 80 
A8P O42 HO42 SING N N 81 
A8P O43 HO43 SING N N 82 
A8P N44 HN44 SING N N 83 
A8P N44 HN4A SING N N 84 
A8P N9  H9   SING N N 85 
A8P C8  H82  SING N N 86 
A8P C1  H1B  SING N N 87 
A8P C2  H2A  SING N N 88 
A8P N39 H39B SING N N 89 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A8P SMILES           ACDLabs              12.01 "O=P(OCC1[NH2+]CC(O)C1O)(O)OP(=O)(O)OCC4OC(n3c(nc2c(ncnc23)N)NCCCCCCCC)C(O)C4O" 
A8P InChI            InChI                1.03  
;InChI=1S/C23H41N7O12P2/c1-2-3-4-5-6-7-8-25-23-29-16-20(24)27-12-28-21(16)30(23)22-19(34)18(33)15(41-22)11-40-44(37,38)42-43(35,36)39-10-13-17(32)14(31)9-26-13/h12-15,17-19,22,26,31-34H,2-11H2,1H3,(H,25,29)(H,35,36)(H,37,38)(H2,24,27,28)/p+1/t13-,14+,15-,17-,18-,19-,22-/m1/s1
;
A8P InChIKey         InChI                1.03  HQJQCBXMIIQUTE-WBZRXDBSSA-O 
A8P SMILES_CANONICAL CACTVS               3.385 "CCCCCCCCNc1nc2c(N)ncnc2n1[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]4[NH2+]C[C@H](O)[C@@H]4O)[C@@H](O)[C@H]3O" 
A8P SMILES           CACTVS               3.385 "CCCCCCCCNc1nc2c(N)ncnc2n1[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4[NH2+]C[CH](O)[CH]4O)[CH](O)[CH]3O" 
A8P SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CCCCCCCCNc1nc2c(ncnc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H](C[NH2+]4)O)O)O)O)N" 
A8P SMILES           "OpenEye OEToolkits" 1.9.2 "CCCCCCCCNc1nc2c(ncnc2n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C[NH2+]4)O)O)O)O)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A8P "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-[(S)-{[(R)-{[(2R,3R,4S)-3,4-dihydroxypyrrolidinium-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-8-(octylamino)adenosine"                                                    
A8P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[[(2R,3S,4R,5R)-5-[6-azanyl-8-(octylamino)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3R,4S)-3,4-bis(oxidanyl)pyrrolidin-1-ium-2-yl]methyl hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A8P "Create component"     2012-07-10 EBI  
A8P "Modify formula"       2012-07-11 EBI  
A8P "Other modification"   2012-07-11 EBI  
A8P "Other modification"   2012-08-06 EBI  
A8P "Modify formula"       2012-08-06 EBI  
A8P "Modify charge"        2012-08-06 EBI  
A8P "Modify formal charge" 2012-08-06 EBI  
A8P "Initial release"      2012-12-14 RCSB 
A8P "Modify descriptor"    2014-09-05 RCSB 
# 
