data_66P
#

_chem_comp.id                                   66P
_chem_comp.name                                 "4-[(4-aminocyclohexyl)amino]-3-(1H-benzimidazol-2-yl)-1H-pyridin-2-one"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H21 N5 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "4-[(cis-4-aminocyclohexyl)amino]-3-(1H-benzimidazol-2-yl)pyridin-2(1H)-one"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-02-04
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       323.392
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    66P
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5HX8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
66P  C2   C1   C  0  1  N  N  N   5.871  57.839   0.587  -1.042  -1.545  -0.236  C2   66P   1  
66P  C3   C2   C  0  1  N  N  N   4.634  58.002   1.259  -1.961  -2.611  -0.212  C3   66P   2  
66P  N4   N1   N  0  1  Y  N  N   8.497  57.773  -0.965   1.032   0.547  -0.132  N4   66P   3  
66P  C5   C3   C  0  1  N  N  N   5.962  55.352   1.110  -2.864  -0.005  -0.851  C5   66P   4  
66P  C7   C4   C  0  1  N  N  N   7.973  55.064   2.615  -2.429   2.455  -0.815  C7   66P   5  
66P  C9   C5   C  0  1  N  N  N   7.935  53.957   0.333  -3.177   1.288   1.264  C9   66P   6  
66P  C10  C6   C  0  1  N  N  N   6.410  54.152   0.285  -3.704   0.125   0.421  C10  66P   7  
66P  C11  C7   C  0  1  Y  N  N   7.826  58.897  -0.775   1.309  -0.732  -0.019  C11  66P   8  
66P  C12  C8   C  0  1  Y  N  N   9.544  59.510  -2.012   3.242   0.352   0.027  C12  66P   9  
66P  C13  C9   C  0  1  Y  N  N   9.590  58.142  -1.754   2.182   1.266  -0.110  C13  66P  10  
66P  C15  C10  C  0  1  Y  N  N  11.640  58.012  -2.993   3.764   3.071  -0.142  C15  66P  11  
66P  O    O1   O  0  1  N  N  N   6.358  61.343  -0.311   1.880  -3.413   0.453  O    66P  12  
66P  C    C11  C  0  1  N  N  N   5.892  60.291   0.116   0.706  -3.150   0.247  C    66P  13  
66P  C1   C12  C  0  1  N  N  N   6.518  58.988   0.001   0.314  -1.816  -0.003  C1   66P  14  
66P  N1   N2   N  0  1  N  N  N   6.450  56.594   0.511  -1.467  -0.258  -0.490  N1   66P  15  
66P  C8   C13  C  0  1  N  N  N   8.417  53.861   1.780  -3.269   2.585   0.457  C8   66P  16  
66P  N2   N3   N  0  1  N  N  N   9.906  53.738   1.812  -2.763   3.702   1.266  N2   66P  17  
66P  C6   C14  C  0  1  N  N  N   6.454  55.231   2.548  -2.956   1.291  -1.658  C6   66P  18  
66P  C4   C15  C  0  1  N  N  N   4.070  59.224   1.338  -1.529  -3.868   0.032  C4   66P  19  
66P  N    N4   N  0  1  N  N  N   4.670  60.315   0.796  -0.215  -4.131   0.259  N    66P  20  
66P  C14  C16  C  0  1  Y  N  N  10.641  57.373  -2.257   2.460   2.633  -0.195  C14  66P  21  
66P  C16  C17  C  0  1  Y  N  N  11.587  59.389  -3.235   4.806   2.165  -0.005  C16  66P  22  
66P  C17  C18  C  0  1  Y  N  N  10.529  60.156  -2.756   4.549   0.812   0.078  C17  66P  23  
66P  N3   N5   N  0  1  Y  N  N   8.410  59.970  -1.374   2.665  -0.904   0.083  N3   66P  24  
66P  H1   H1   H  0  1  N  N  N   4.144  57.150   1.707  -3.010  -2.425  -0.389  H1   66P  25  
66P  H3   H3   H  0  1  N  N  N   4.862  55.369   1.123  -3.240  -0.834  -1.451  H3   66P  26  
66P  H4   H4   H  0  1  N  N  N   8.274  54.909   3.662  -2.495   3.378  -1.390  H4   66P  27  
66P  H5   H5   H  0  1  N  N  N   8.455  55.973   2.225  -1.389   2.267  -0.547  H5   66P  28  
66P  H6   H6   H  0  1  N  N  N   8.198  53.031  -0.198  -3.775   1.381   2.170  H6   66P  29  
66P  H7   H7   H  0  1  N  N  N   8.425  54.812  -0.156  -2.137   1.100   1.532  H7   66P  30  
66P  H8   H8   H  0  1  N  N  N   6.104  54.306  -0.760  -4.744   0.313   0.153  H8   66P  31  
66P  H9   H9   H  0  1  N  N  N   5.924  53.248   0.680  -3.638  -0.799   0.996  H9   66P  32  
66P  H10  H10  H  0  1  N  N  N  12.466  57.435  -3.381   3.978   4.127  -0.207  H10  66P  33  
66P  H12  H12  H  0  1  N  N  N   6.512  56.399  -0.468  -0.841   0.480  -0.430  H12  66P  34  
66P  H13  H13  H  0  1  N  N  N   7.981  52.955   2.227  -4.308   2.773   0.188  H13  66P  35  
66P  H14  H14  H  0  1  N  N  N  10.215  53.676   2.761  -2.813   4.570   0.754  H14  66P  36  
66P  H15  H15  H  0  1  N  N  N  10.183  52.915   1.316  -3.259   3.768   2.141  H15  66P  37  
66P  H17  H17  H  0  1  N  N  N   6.171  56.140   3.099  -2.358   1.199  -2.564  H17  66P  38  
66P  H18  H18  H  0  1  N  N  N   5.978  54.356   3.015  -3.996   1.479  -1.926  H18  66P  39  
66P  H19  H19  H  0  1  N  N  N   3.122  59.338   1.843  -2.242  -4.678   0.049  H19  66P  40  
66P  H20  H20  H  0  1  N  N  N  10.680  56.308  -2.081   1.654   3.345  -0.301  H20  66P  41  
66P  H21  H21  H  0  1  N  N  N  12.376  59.862  -3.800   5.825   2.521   0.034  H21  66P  42  
66P  H22  H22  H  0  1  N  N  N  10.473  61.216  -2.954   5.365   0.112   0.185  H22  66P  43  
66P  H2   H2   H  0  1  N  N  N   4.206  61.196   0.889   0.064  -5.044   0.431  H2   66P  44  
66P  H11  H11  H  0  1  N  N  N   8.080  60.914  -1.355   3.133  -1.749   0.177  H11  66P  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
66P  C16  C15  DOUB  Y  N   1  
66P  C16  C17  SING  Y  N   2  
66P  C15  C14  SING  Y  N   3  
66P  C17  C12  DOUB  Y  N   4  
66P  C14  C13  DOUB  Y  N   5  
66P  C12  C13  SING  Y  N   6  
66P  C12  N3   SING  Y  N   7  
66P  C13  N4   SING  Y  N   8  
66P  N3   C11  SING  Y  N   9  
66P  N4   C11  DOUB  Y  N  10  
66P  C11  C1   SING  N  N  11  
66P  O    C    DOUB  N  N  12  
66P  C1   C    SING  N  N  13  
66P  C1   C2   DOUB  N  N  14  
66P  C    N    SING  N  N  15  
66P  C10  C9   SING  N  N  16  
66P  C10  C5   SING  N  N  17  
66P  C9   C8   SING  N  N  18  
66P  N1   C2   SING  N  N  19  
66P  N1   C5   SING  N  N  20  
66P  C2   C3   SING  N  N  21  
66P  N    C4   SING  N  N  22  
66P  C5   C6   SING  N  N  23  
66P  C3   C4   DOUB  N  N  24  
66P  C8   N2   SING  N  N  25  
66P  C8   C7   SING  N  N  26  
66P  C6   C7   SING  N  N  27  
66P  C3   H1   SING  N  N  28  
66P  C5   H3   SING  N  N  29  
66P  C7   H4   SING  N  N  30  
66P  C7   H5   SING  N  N  31  
66P  C9   H6   SING  N  N  32  
66P  C9   H7   SING  N  N  33  
66P  C10  H8   SING  N  N  34  
66P  C10  H9   SING  N  N  35  
66P  C15  H10  SING  N  N  36  
66P  N1   H12  SING  N  N  37  
66P  C8   H13  SING  N  N  38  
66P  N2   H14  SING  N  N  39  
66P  N2   H15  SING  N  N  40  
66P  C6   H17  SING  N  N  41  
66P  C6   H18  SING  N  N  42  
66P  C4   H19  SING  N  N  43  
66P  C14  H20  SING  N  N  44  
66P  C16  H21  SING  N  N  45  
66P  C17  H22  SING  N  N  46  
66P  N    H2   SING  N  N  47  
66P  N3   H11  SING  N  N  48  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
66P  SMILES            ACDLabs               12.01  "C=1(C=CNC(=O)C=1c2nc3c(n2)cccc3)NC4CCC(CC4)N"  
66P  InChI             InChI                 1.03   "InChI=1S/C18H21N5O/c19-11-5-7-12(8-6-11)21-15-9-10-20-18(24)16(15)17-22-13-3-1-2-4-14(13)23-17/h1-4,9-12H,5-8,19H2,(H,22,23)(H2,20,21,24)/t11-,12+"  
66P  InChIKey          InChI                 1.03   JLWGOAGEDWMEBT-TXEJJXNPSA-N  
66P  SMILES_CANONICAL  CACTVS                3.385  "N[C@H]1CC[C@H](CC1)NC2=C(C(=O)NC=C2)c3[nH]c4ccccc4n3"  
66P  SMILES            CACTVS                3.385  "N[CH]1CC[CH](CC1)NC2=C(C(=O)NC=C2)c3[nH]c4ccccc4n3"  
66P  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.4  "c1ccc2c(c1)[nH]c(n2)C3=C(C=CNC3=O)NC4CCC(CC4)N"  
66P  SMILES            "OpenEye OEToolkits"  2.0.4  "c1ccc2c(c1)[nH]c(n2)C3=C(C=CNC3=O)NC4CCC(CC4)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
66P  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-[(cis-4-aminocyclohexyl)amino]-3-(1H-benzimidazol-2-yl)pyridin-2(1H)-one"  
66P  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.4  "4-[(4-azanylcyclohexyl)amino]-3-(1~{H}-benzimidazol-2-yl)-1~{H}-pyridin-2-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
66P  "Create component"  2016-02-04  RCSB  
66P  "Initial release"   2016-03-16  RCSB  
66P  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     66P
_pdbx_chem_comp_synonyms.name        "4-[(cis-4-aminocyclohexyl)amino]-3-(1H-benzimidazol-2-yl)pyridin-2(1H)-one"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
