data_5QP
# 
_chem_comp.id                                    5QP 
_chem_comp.name                                  "(1R,2R,3S,5R,6S)-2,3,5-trihydroxy-6-(hydroxymethyl)cyclohexyl alpha-D-glucopyranoside" 
_chem_comp.type                                  D-saccharide 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C13 H24 O10" 
_chem_comp.mon_nstd_parent_comp_id               GLC 
_chem_comp.pdbx_synonyms                         
;(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(1~{R},2~{S},3~{R},5~{S},6~{R})-2-(hydroxymethyl)-3,5,6-tris(oxida
 nyl)cyclohexyl]oxy-oxane-3,4,5-triol; gluosyl epi-cyclophellitol (bound form);
(1R,2R,3S,5R,6S)-2,3,5-trihydroxy-6-(hydroxymethyl)cyclohexyl alpha-D-glucoside;
(1R,2R,3S,5R,6S)-2,3,5-trihydroxy-6-(hydroxymethyl)cyclohexyl D-glucoside;
(1R,2R,3S,5R,6S)-2,3,5-trihydroxy-6-(hydroxymethyl)cyclohexyl glucoside
;
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-11-10 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        340.324 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5QP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5EMY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 5QP 
;(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(1~{R},2~{S},3~{R},5~{S},6~{R})-2-(hydroxymethyl)-3,5,6-tris(oxida
 nyl)cyclohexyl]oxy-oxane-3,4,5-triol
;
PDB ? 
2 5QP "gluosyl epi-cyclophellitol (bound form)"                                                                                                                       PDB ? 
3 5QP "(1R,2R,3S,5R,6S)-2,3,5-trihydroxy-6-(hydroxymethyl)cyclohexyl alpha-D-glucoside"                                                                               PDB ? 
4 5QP "(1R,2R,3S,5R,6S)-2,3,5-trihydroxy-6-(hydroxymethyl)cyclohexyl D-glucoside"                                                                                     PDB ? 
5 5QP "(1R,2R,3S,5R,6S)-2,3,5-trihydroxy-6-(hydroxymethyl)cyclohexyl glucoside"                                                                                       PDB ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5QP O2   O2   O 0 1 N N N N N N -12.070 -15.362 26.450 1.728  -2.858 1.059  O2   5QP 1  
5QP C2   C2   C 0 1 N N R N N N -13.269 -15.970 26.345 2.192  -1.862 0.145  C2   5QP 2  
5QP C3   C3   C 0 1 N N S N N N -13.238 -17.165 27.084 2.965  -0.784 0.910  C3   5QP 3  
5QP O3   O3   O 0 1 N N N N N N -12.948 -16.881 28.441 4.125  -1.364 1.512  O3   5QP 4  
5QP C4   C4   C 0 1 N N S N N N -14.457 -17.830 26.982 3.390  0.315  -0.068 C4   5QP 5  
5QP O4   O4   O 0 1 N N N N N N -14.411 -19.013 27.656 4.049  1.362  0.648  O4   5QP 6  
5QP C5   C5   C 0 1 N N R N N N -14.740 -18.028 25.584 2.148  0.876  -0.765 C5   5QP 7  
5QP C6   C6   C 0 1 N N N N N N -16.003 -18.793 25.372 2.569  1.934  -1.786 C6   5QP 8  
5QP O6   O6   O 0 1 N N N N N N -17.166 -18.056 25.836 1.405  2.539  -2.353 O6   5QP 9  
5QP O5   O5   O 0 1 N N N N N N -14.818 -16.897 24.950 1.458  -0.184 -1.431 O5   5QP 10 
5QP C1   C1   C 0 1 N N S N N N -13.676 -16.129 24.954 0.996  -1.218 -0.561 C1   5QP 11 
5QP O1   O1   O 0 1 N N N N N N -12.660 -16.624 24.099 0.112  -0.660 0.414  O1   5QP 12 
5QP CAX  CAX  C 0 1 N N R N N N -12.820 -16.523 22.670 -1.163 -0.278 -0.108 CAX  5QP 13 
5QP CAT  CAT  C 0 1 N N R N N N -12.152 -15.356 22.107 -2.094 -1.492 -0.118 CAT  5QP 14 
5QP OAI  OAI  O 0 1 N N N N N N -12.687 -14.193 22.461 -1.531 -2.518 -0.939 OAI  5QP 15 
5QP CAO  CAO  C 0 1 N N S N N N -12.208 -15.345 20.656 -3.458 -1.084 -0.677 CAO  5QP 16 
5QP OAD  OAD  O 0 1 N N N N N N -11.390 -14.277 20.256 -4.328 -2.217 -0.686 OAD  5QP 17 
5QP CAN  CAN  C 0 1 N N N N N N -11.874 -16.483 20.009 -4.061 0.014  0.202  CAN  5QP 18 
5QP CAR  CAR  C 0 1 N N R N N N -12.484 -17.612 20.687 -3.130 1.228  0.212  CAR  5QP 19 
5QP OAG  OAG  O 0 1 N N N N N N -11.913 -18.719 20.134 -3.693 2.254  1.033  OAG  5QP 20 
5QP CAV  CAV  C 0 1 N N S N N N -12.278 -17.646 22.073 -1.765 0.819  0.771  CAV  5QP 21 
5QP CAK  CAK  C 0 1 N N N N N N -12.780 -18.948 22.687 -0.834 2.033  0.781  CAK  5QP 22 
5QP OAB  OAB  O 0 1 N N N N N N -13.990 -19.104 22.494 -1.336 3.011  1.694  OAB  5QP 23 
5QP HO2  H21  H 0 1 N Y N N N N -11.838 -15.275 27.367 1.229  -3.573 0.642  HO2  5QP 24 
5QP H2   H22  H 0 1 N N N N N N -14.019 -15.318 26.816 2.846  -2.324 -0.595 H2   5QP 25 
5QP H3   H31  H 0 1 N N N N N N -12.443 -17.810 26.682 2.327  -0.359 1.685  H3   5QP 26 
5QP HO3  H32  H 0 1 N Y N N N N -12.928 -17.691 28.937 3.930  -2.073 2.139  HO3  5QP 27 
5QP H4   H41  H 0 1 N N N N N N -15.248 -17.196 27.409 4.069  -0.101 -0.811 H4   5QP 28 
5QP HO4  H42  H 0 1 N Y N N N N -14.223 -18.849 28.573 4.844  1.077  1.119  HO4  5QP 29 
5QP H5   H51  H 0 1 N N N N N N -13.924 -18.632 25.162 1.488  1.329  -0.024 H5   5QP 30 
5QP H61  H62  H 0 1 N N N N N N -16.118 -18.999 24.298 3.171  2.696  -1.293 H61  5QP 31 
5QP H62  H61  H 0 1 N N N N N N -15.940 -19.743 25.923 3.155  1.463  -2.576 H62  5QP 32 
5QP HO6  H63  H 0 1 N Y N N N N -17.949 -18.572 25.685 1.597  3.221  -3.011 HO6  5QP 33 
5QP H1   H11  H 0 1 N N N N N N -13.947 -15.127 24.589 0.467  -1.973 -1.142 H1   5QP 34 
5QP HAX1 HAX1 H 0 0 N N N N N N -13.893 -16.460 22.436 -1.041 0.095  -1.125 HAX1 5QP 35 
5QP HAT1 HAT1 H 0 0 N N N N N N -11.095 -15.389 22.409 -2.215 -1.866 0.899  HAT1 5QP 36 
5QP HAI1 HAI1 H 0 0 N N N N N N -12.688 -14.120 23.408 -2.069 -3.319 -0.992 HAI1 5QP 37 
5QP HAO1 HAO1 H 0 0 N N N N N N -13.241 -15.087 20.381 -3.337 -0.710 -1.694 HAO1 5QP 38 
5QP HAD1 HAD1 H 0 0 N N N N N N -11.644 -13.490 20.724 -5.213 -2.031 -1.029 HAD1 5QP 39 
5QP HAN1 HAN1 H 0 0 N N N N N N -12.237 -16.437 18.972 -5.033 0.306  -0.196 HAN1 5QP 40 
5QP H1A  H1   H 0 1 N Y N N N N -10.780 -16.600 20.010 -4.182 -0.359 1.219  H1A  5QP 41 
5QP HAR1 HAR1 H 0 0 N N N N N N -13.564 -17.605 20.480 -3.009 1.602  -0.805 HAR1 5QP 42 
5QP HAG1 HAG1 H 0 0 N N N N N N -12.274 -19.498 20.540 -4.560 2.562  0.737  HAG1 5QP 43 
5QP HAV1 HAV1 H 0 0 N N N N N N -11.192 -17.627 22.247 -1.886 0.446  1.788  HAV1 5QP 44 
5QP HAK1 HAK1 H 0 0 N N N N N N -12.235 -19.790 22.235 0.163  1.723  1.093  HAK1 5QP 45 
5QP HAK2 HAK2 H 0 0 N N N N N N -12.591 -18.928 23.770 -0.785 2.462  -0.220 HAK2 5QP 46 
5QP HAB1 HAB1 H 0 0 N N N N N N -14.271 -19.922 22.888 -0.794 3.810  1.752  HAB1 5QP 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5QP CAN CAO  SING N N 1  
5QP CAN CAR  SING N N 2  
5QP OAG CAR  SING N N 3  
5QP OAD CAO  SING N N 4  
5QP CAO CAT  SING N N 5  
5QP CAR CAV  SING N N 6  
5QP CAV CAX  SING N N 7  
5QP CAV CAK  SING N N 8  
5QP CAT OAI  SING N N 9  
5QP CAT CAX  SING N N 10 
5QP OAB CAK  SING N N 11 
5QP CAX O1   SING N N 12 
5QP O1  C1   SING N N 13 
5QP O5  C1   SING N N 14 
5QP O5  C5   SING N N 15 
5QP C1  C2   SING N N 16 
5QP C6  C5   SING N N 17 
5QP C6  O6   SING N N 18 
5QP C5  C4   SING N N 19 
5QP C2  O2   SING N N 20 
5QP C2  C3   SING N N 21 
5QP C4  C3   SING N N 22 
5QP C4  O4   SING N N 23 
5QP C3  O3   SING N N 24 
5QP O2  HO2  SING N N 25 
5QP C2  H2   SING N N 26 
5QP C3  H3   SING N N 27 
5QP O3  HO3  SING N N 28 
5QP C4  H4   SING N N 29 
5QP O4  HO4  SING N N 30 
5QP C5  H5   SING N N 31 
5QP C6  H61  SING N N 32 
5QP C6  H62  SING N N 33 
5QP O6  HO6  SING N N 34 
5QP C1  H1   SING N N 35 
5QP CAX HAX1 SING N N 36 
5QP CAT HAT1 SING N N 37 
5QP OAI HAI1 SING N N 38 
5QP CAO HAO1 SING N N 39 
5QP OAD HAD1 SING N N 40 
5QP CAN HAN1 SING N N 41 
5QP CAN H1A  SING N N 42 
5QP CAR HAR1 SING N N 43 
5QP OAG HAG1 SING N N 44 
5QP CAV HAV1 SING N N 45 
5QP CAK HAK1 SING N N 46 
5QP CAK HAK2 SING N N 47 
5QP OAB HAB1 SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5QP InChI            InChI                1.03  "InChI=1S/C13H24O10/c14-2-4-5(16)1-6(17)8(18)12(4)23-13-11(21)10(20)9(19)7(3-15)22-13/h4-21H,1-3H2/t4-,5+,6-,7+,8+,9+,10-,11+,12+,13+/m0/s1" 
5QP InChIKey         InChI                1.03  POWCVSWKDOOEBI-FELRGSJNSA-N                                                                                                                  
5QP SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1O[C@H](O[C@H]2[C@H](O)[C@@H](O)C[C@@H](O)[C@@H]2CO)[C@H](O)[C@@H](O)[C@@H]1O"                                                       
5QP SMILES           CACTVS               3.385 "OC[CH]1O[CH](O[CH]2[CH](O)[CH](O)C[CH](O)[CH]2CO)[CH](O)[CH](O)[CH]1O"                                                                      
5QP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "C1[C@H]([C@@H]([C@H]([C@@H]([C@H]1O)O)O[C@@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)CO)O"                                                   
5QP SMILES           "OpenEye OEToolkits" 2.0.4 "C1C(C(C(C(C1O)O)OC2C(C(C(C(O2)CO)O)O)O)CO)O"                                                                                                
# 
_pdbx_chem_comp_identifier.comp_id           5QP 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.4 
_pdbx_chem_comp_identifier.identifier        
;(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(1~{R},2~{S},3~{R},5~{S},6~{R})-2-(hydroxymethyl)-3,5,6-tris(oxida
nyl)cyclohexyl]oxy-oxane-3,4,5-triol
;
# 
_pdbx_chem_comp_related.comp_id             5QP 
_pdbx_chem_comp_related.related_comp_id     GLC 
_pdbx_chem_comp_related.relationship_type   "Carbohydrate core" 
_pdbx_chem_comp_related.details             ? 
# 
loop_
_pdbx_chem_comp_atom_related.ordinal 
_pdbx_chem_comp_atom_related.comp_id 
_pdbx_chem_comp_atom_related.atom_id 
_pdbx_chem_comp_atom_related.related_comp_id 
_pdbx_chem_comp_atom_related.related_atom_id 
_pdbx_chem_comp_atom_related.related_type 
1  5QP C1  GLC C1  "Carbohydrate core" 
2  5QP C2  GLC C2  "Carbohydrate core" 
3  5QP C3  GLC C3  "Carbohydrate core" 
4  5QP C4  GLC C4  "Carbohydrate core" 
5  5QP C5  GLC C5  "Carbohydrate core" 
6  5QP C6  GLC C6  "Carbohydrate core" 
7  5QP O1  GLC O1  "Carbohydrate core" 
8  5QP O2  GLC O2  "Carbohydrate core" 
9  5QP O3  GLC O3  "Carbohydrate core" 
10 5QP O4  GLC O4  "Carbohydrate core" 
11 5QP O5  GLC O5  "Carbohydrate core" 
12 5QP O6  GLC O6  "Carbohydrate core" 
13 5QP H1  GLC H1  "Carbohydrate core" 
14 5QP HO2 GLC HO2 "Carbohydrate core" 
15 5QP H2  GLC H2  "Carbohydrate core" 
16 5QP H3  GLC H3  "Carbohydrate core" 
17 5QP HO3 GLC HO3 "Carbohydrate core" 
18 5QP H4  GLC H4  "Carbohydrate core" 
19 5QP HO4 GLC HO4 "Carbohydrate core" 
20 5QP H5  GLC H5  "Carbohydrate core" 
21 5QP H62 GLC H62 "Carbohydrate core" 
22 5QP H61 GLC H61 "Carbohydrate core" 
23 5QP HO6 GLC HO6 "Carbohydrate core" 
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
5QP "CARBOHYDRATE ISOMER"                 D        PDB ? 
5QP "CARBOHYDRATE RING"                   pyranose PDB ? 
5QP "CARBOHYDRATE ANOMER"                 alpha    PDB ? 
5QP "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose   PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5QP "Create component"         2015-11-10 RCSB 
5QP "Initial release"          2016-07-06 RCSB 
5QP "Other modification"       2020-07-03 RCSB 
5QP "Modify parent residue"    2020-07-17 RCSB 
5QP "Modify name"              2020-07-17 RCSB 
5QP "Modify synonyms"          2020-07-17 RCSB 
5QP "Modify internal type"     2020-07-17 RCSB 
5QP "Modify linking type"      2020-07-17 RCSB 
5QP "Modify atom id"           2020-07-17 RCSB 
5QP "Modify component atom id" 2020-07-17 RCSB 
5QP "Modify leaving atom flag" 2020-07-17 RCSB 
5QP "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            5QP 
_pdbx_chem_comp_pcm.modified_residue_id                ASP 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Carbohydrate 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CAN 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OD2 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
