data_YLO
# 
_chem_comp.id                                    YLO 
_chem_comp.name                                  "1-[2-(4-METHYLPHENOXY)ETHYL]-2-(2-PHENOXYETHYLSULFANYL)BENZIMIDAZOLE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H24 N2 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-06-04 
_chem_comp.pdbx_modified_date                    2014-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        404.525 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YLO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2YLO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YLO C01  C01  C 0 1 N N N -25.482 19.661 -27.748 6.525  4.714  -1.660 C01  YLO 1  
YLO C02  C02  C 0 1 Y N N -24.400 19.300 -28.764 5.735  3.699  -0.876 C02  YLO 2  
YLO C03  C03  C 0 1 Y N N -23.966 20.213 -29.731 5.823  3.672  0.504  C03  YLO 3  
YLO C04  C04  C 0 1 Y N N -22.997 19.935 -30.688 5.100  2.742  1.226  C04  YLO 4  
YLO C05  C05  C 0 1 Y N N -22.431 18.686 -30.734 4.286  1.834  0.565  C05  YLO 5  
YLO C06  C06  C 0 1 Y N N -22.860 17.759 -29.761 4.199  1.863  -0.820 C06  YLO 6  
YLO C07  C07  C 0 1 Y N N -23.826 18.044 -28.787 4.919  2.799  -1.536 C07  YLO 7  
YLO O08  O08  O 0 1 N N N -21.464 18.389 -31.708 3.574  0.918  1.272  O08  YLO 8  
YLO C09  C09  C 0 1 N N N -20.883 17.132 -31.745 2.756  0.014  0.526  C09  YLO 9  
YLO C10  C10  C 0 1 N N N -19.504 17.147 -31.180 2.037  -0.935 1.486  C10  YLO 10 
YLO N11  N11  N 0 1 Y N N -18.755 16.024 -30.594 1.198  -1.861 0.721  N11  YLO 11 
YLO C12  C12  C 0 1 Y N N -18.002 16.100 -29.437 1.581  -3.096 0.223  C12  YLO 12 
YLO C13  C13  C 0 1 Y N N -17.753 17.106 -28.519 2.760  -3.824 0.261  C13  YLO 13 
YLO C14  C14  C 0 1 Y N N -16.952 16.933 -27.431 2.824  -5.061 -0.348 C14  YLO 14 
YLO C15  C15  C 0 1 Y N N -16.365 15.718 -27.216 1.715  -5.581 -0.999 C15  YLO 15 
YLO C16  C16  C 0 1 Y N N -16.601 14.716 -28.131 0.536  -4.871 -1.048 C16  YLO 16 
YLO C17  C17  C 0 1 Y N N -17.423 14.903 -29.250 0.455  -3.618 -0.435 C17  YLO 17 
YLO N18  N18  N 0 1 Y N N -17.803 14.075 -30.294 -0.541 -2.702 -0.313 N18  YLO 18 
YLO C19  C19  C 0 1 Y N N -18.606 14.775 -31.092 -0.108 -1.671 0.370  C19  YLO 19 
YLO S20  S20  S 0 1 N N N -19.273 14.118 -32.506 -1.068 -0.249 0.774  S20  YLO 20 
YLO C21  C21  C 0 1 N N N -20.416 12.788 -32.287 -2.641 -0.701 0.000  C21  YLO 21 
YLO C22  C22  C 0 1 N N N -20.347 11.800 -33.446 -3.660 0.417  0.226  C22  YLO 22 
YLO O23  O23  O 0 1 N N N -21.476 11.632 -34.244 -4.902 0.060  -0.384 O23  YLO 23 
YLO C24  C24  C 0 1 Y N N -21.726 12.466 -35.313 -5.922 0.951  -0.275 C24  YLO 24 
YLO C25  C25  C 0 1 Y N N -20.852 12.570 -36.366 -7.155 0.668  -0.844 C25  YLO 25 
YLO C26  C26  C 0 1 Y N N -21.124 13.400 -37.442 -8.191 1.576  -0.732 C26  YLO 26 
YLO C27  C27  C 0 1 Y N N -22.297 14.124 -37.463 -7.999 2.765  -0.053 C27  YLO 27 
YLO C28  C28  C 0 1 Y N N -23.170 14.025 -36.416 -6.770 3.049  0.514  C28  YLO 28 
YLO C29  C29  C 0 1 Y N N -22.899 13.192 -35.354 -5.734 2.142  0.410  C29  YLO 29 
YLO H011 H011 H 0 0 N N N -26.471 19.415 -28.162 7.501  4.300  -1.912 H011 YLO 30 
YLO H012 H012 H 0 0 N N N -25.320 19.091 -26.821 5.988  4.963  -2.576 H012 YLO 31 
YLO H013 H013 H 0 0 N N N -25.434 20.738 -27.529 6.656  5.615  -1.060 H013 YLO 32 
YLO H03  H03  H 0 1 N N N -24.412 21.196 -29.734 6.458  4.379  1.018  H03  YLO 33 
YLO H07  H07  H 0 1 N N N -24.117 17.294 -28.066 4.848  2.825  -2.614 H07  YLO 34 
YLO H04  H04  H 0 1 N N N -22.692 20.697 -31.390 5.170  2.721  2.303  H04  YLO 35 
YLO H06  H06  H 0 1 N N N -22.419 16.773 -29.767 3.565  1.157  -1.336 H06  YLO 36 
YLO H091 H091 H 0 0 N N N -21.501 16.436 -31.159 2.020  0.579  -0.046 H091 YLO 37 
YLO H092 H092 H 0 0 N N N -20.837 16.791 -32.790 3.381  -0.563 -0.156 H092 YLO 38 
YLO H101 H101 H 0 0 N N N -18.869 17.506 -32.003 2.773  -1.500 2.058  H101 YLO 39 
YLO H102 H102 H 0 0 N N N -19.537 17.906 -30.384 1.412  -0.358 2.168  H102 YLO 40 
YLO H13  H13  H 0 1 N N N -18.214 18.070 -28.672 3.627  -3.425 0.766  H13  YLO 41 
YLO H14  H14  H 0 1 N N N -16.782 17.749 -26.744 3.743  -5.627 -0.318 H14  YLO 42 
YLO H15  H15  H 0 1 N N N -15.735 15.549 -26.355 1.777  -6.550 -1.473 H15  YLO 43 
YLO H16  H16  H 0 1 N N N -16.136 13.753 -27.981 -0.323 -5.282 -1.557 H16  YLO 44 
YLO H211 H211 H 0 0 N N N -20.177 12.260 -31.352 -2.491 -0.846 -1.070 H211 YLO 45 
YLO H212 H212 H 0 0 N N N -21.435 13.198 -32.226 -3.011 -1.626 0.444  H212 YLO 46 
YLO H221 H221 H 0 0 N N N -19.530 12.129 -34.105 -3.810 0.561  1.296  H221 YLO 47 
YLO H222 H222 H 0 0 N N N -20.101 10.816 -33.020 -3.290 1.341  -0.217 H222 YLO 48 
YLO H25  H25  H 0 1 N N N -19.937 11.996 -36.356 -7.306 -0.260 -1.375 H25  YLO 49 
YLO H29  H29  H 0 1 N N N -23.610 13.106 -34.546 -4.776 2.362  0.858  H29  YLO 50 
YLO H26  H26  H 0 1 N N N -20.422 13.479 -38.259 -9.151 1.357  -1.175 H26  YLO 51 
YLO H27  H27  H 0 1 N N N -22.525 14.765 -38.302 -8.809 3.474  0.033  H27  YLO 52 
YLO H28  H28  H 0 1 N N N -24.081 14.606 -36.422 -6.623 3.979  1.043  H28  YLO 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YLO C01 C02  SING N N 1  
YLO C02 C03  SING Y N 2  
YLO C02 C07  DOUB Y N 3  
YLO C03 C04  DOUB Y N 4  
YLO C04 C05  SING Y N 5  
YLO C05 C06  DOUB Y N 6  
YLO C05 O08  SING N N 7  
YLO C06 C07  SING Y N 8  
YLO O08 C09  SING N N 9  
YLO C09 C10  SING N N 10 
YLO C10 N11  SING N N 11 
YLO N11 C12  SING Y N 12 
YLO N11 C19  SING Y N 13 
YLO C12 C13  SING Y N 14 
YLO C12 C17  DOUB Y N 15 
YLO C13 C14  DOUB Y N 16 
YLO C14 C15  SING Y N 17 
YLO C15 C16  DOUB Y N 18 
YLO C16 C17  SING Y N 19 
YLO C17 N18  SING Y N 20 
YLO N18 C19  DOUB Y N 21 
YLO C19 S20  SING N N 22 
YLO S20 C21  SING N N 23 
YLO C21 C22  SING N N 24 
YLO C22 O23  SING N N 25 
YLO O23 C24  SING N N 26 
YLO C24 C25  SING Y N 27 
YLO C24 C29  DOUB Y N 28 
YLO C25 C26  DOUB Y N 29 
YLO C26 C27  SING Y N 30 
YLO C27 C28  DOUB Y N 31 
YLO C28 C29  SING Y N 32 
YLO C01 H011 SING N N 33 
YLO C01 H012 SING N N 34 
YLO C01 H013 SING N N 35 
YLO C03 H03  SING N N 36 
YLO C07 H07  SING N N 37 
YLO C04 H04  SING N N 38 
YLO C06 H06  SING N N 39 
YLO C09 H091 SING N N 40 
YLO C09 H092 SING N N 41 
YLO C10 H101 SING N N 42 
YLO C10 H102 SING N N 43 
YLO C13 H13  SING N N 44 
YLO C14 H14  SING N N 45 
YLO C15 H15  SING N N 46 
YLO C16 H16  SING N N 47 
YLO C21 H211 SING N N 48 
YLO C21 H212 SING N N 49 
YLO C22 H221 SING N N 50 
YLO C22 H222 SING N N 51 
YLO C25 H25  SING N N 52 
YLO C29 H29  SING N N 53 
YLO C26 H26  SING N N 54 
YLO C27 H27  SING N N 55 
YLO C28 H28  SING N N 56 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YLO SMILES           ACDLabs              12.01 "n2c1ccccc1n(c2SCCOc3ccccc3)CCOc4ccc(cc4)C"                                                                                          
YLO InChI            InChI                1.03  "InChI=1S/C24H24N2O2S/c1-19-11-13-21(14-12-19)27-16-15-26-23-10-6-5-9-22(23)25-24(26)29-18-17-28-20-7-3-2-4-8-20/h2-14H,15-18H2,1H3" 
YLO InChIKey         InChI                1.03  PNCBJXVNIRRHJP-UHFFFAOYSA-N                                                                                                          
YLO SMILES_CANONICAL CACTVS               3.385 "Cc1ccc(OCCn2c(SCCOc3ccccc3)nc4ccccc24)cc1"                                                                                          
YLO SMILES           CACTVS               3.385 "Cc1ccc(OCCn2c(SCCOc3ccccc3)nc4ccccc24)cc1"                                                                                          
YLO SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "Cc1ccc(cc1)OCCn2c3ccccc3nc2SCCOc4ccccc4"                                                                                            
YLO SMILES           "OpenEye OEToolkits" 1.9.2 "Cc1ccc(cc1)OCCn2c3ccccc3nc2SCCOc4ccccc4"                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YLO "SYSTEMATIC NAME" ACDLabs              12.01 "1-[2-(4-methylphenoxy)ethyl]-2-[(2-phenoxyethyl)sulfanyl]-1H-benzimidazole" 
YLO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "1-[2-(4-methylphenoxy)ethyl]-2-(2-phenoxyethylsulfanyl)benzimidazole"       
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YLO "Create component"  2011-06-04 EBI  
YLO "Modify descriptor" 2014-09-05 RCSB 
# 
