data_YIO
#

_chem_comp.id                                   YIO
_chem_comp.name                                 1-thio-beta-D-galactopyranose
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H12 O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;(2R,3R,4S,5R,6S)-2-(HYDROXYMETHYL)-6-SULFANYL-OXANE-3,4,5-TRIOL; 1-thio-beta-D-galactose; 1-thio-D-galactose;
1-thio-galactose
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-05-16
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       196.221
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YIO
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2YIO
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  YIO  "(2R,3R,4S,5R,6S)-2-(HYDROXYMETHYL)-6-SULFANYL-OXANE-3,4,5-TRIOL"  PDB  ?  
2  YIO  1-thio-beta-D-galactose                                            PDB  ?  
3  YIO  1-thio-D-galactose                                                 PDB  ?  
4  YIO  1-thio-galactose                                                   PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YIO  C1   C1    C  0  1  N  N  S   6.620  10.728  43.681  -0.729   0.941   0.375  C1   YIO   1  
YIO  C2   C2    C  0  1  N  N  R   8.108  10.371  43.267  -1.388  -0.378  -0.038  C2   YIO   2  
YIO  C3   C3    C  0  1  N  N  S   9.056  10.810  44.444  -0.587  -1.545   0.548  C3   YIO   3  
YIO  C4   C4    C  0  1  N  N  R   8.832  12.243  44.822   0.865  -1.445   0.069  C4   YIO   4  
YIO  C5   C5    C  0  1  N  N  R   7.338  12.535  44.953   1.436  -0.085   0.477  C5   YIO   5  
YIO  C6   C6    C  0  1  N  N  N   7.040  13.964  45.343   2.867   0.047  -0.050  C6   YIO   6  
YIO  O2   O2    O  0  1  N  N  N   8.303   8.961  42.944  -2.726  -0.420   0.461  O2   YIO   7  
YIO  O3   O3    O  0  1  N  N  N  10.462  10.636  44.214  -1.152  -2.781   0.107  O3   YIO   8  
YIO  O4   O4    O  0  1  N  N  N   9.419  13.058  43.842   0.908  -1.573  -1.354  O4   YIO   9  
YIO  O5   O5    O  0  1  N  N  N   6.675  12.190  43.753   0.627   0.956  -0.075  O5   YIO  10  
YIO  O6   O6    O  0  1  N  N  N   7.720  14.209  46.566   3.441   1.265   0.429  O6   YIO  11  
YIO  S1   S1    S  0  1  N  N  N   5.025  10.303  42.798  -1.629   2.327  -0.373  S1   YIO  12  
YIO  H1   H1    H  0  1  N  N  N   6.465  10.048  44.532  -0.753   1.035   1.461  H1   YIO  13  
YIO  H2   H2    H  0  1  N  N  N   8.346  10.914  42.341  -1.400  -0.454  -1.125  H2   YIO  14  
YIO  H3   H3    H  0  1  N  N  N   8.774  10.123  45.255  -0.615  -1.497   1.637  H3   YIO  15  
YIO  HO2  HA    H  0  1  N  Y  N   8.345   8.855  42.001  -3.290   0.295   0.134  HO2  YIO  16  
YIO  H4   H4    H  0  1  N  N  N   9.295  12.451  45.798   1.454  -2.240   0.525  H4   YIO  17  
YIO  HO3  HB    H  0  1  N  Y  N  10.628  10.598  43.279  -2.073  -2.908   0.370  HO3  YIO  18  
YIO  H5   H5    H  0  1  N  N  N   6.958  11.913  45.777   1.441  -0.004   1.564  H5   YIO  19  
YIO  HO4  HC    H  0  1  N  Y  N   9.552  13.931  44.193   0.556  -2.411  -1.684  HO4  YIO  20  
YIO  H61  H61C  H  0  1  N  N  N   7.394  14.655  44.564   3.462  -0.797   0.299  H61  YIO  21  
YIO  H62  H62C  H  0  1  N  N  N   5.957  14.122  45.458   2.853   0.056  -1.140  H62  YIO  22  
YIO  HO6  HO6   H  0  1  N  Y  N   8.654  14.264  46.404   4.349   1.414   0.133  HO6  YIO  23  
YIO  HS1  HS1   H  0  1  N  N  N   4.062  10.204  43.665  -0.951   3.401   0.068  HS1  YIO  24  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YIO  C1  C2   SING  N  N   1  
YIO  C1  O5   SING  N  N   2  
YIO  C1  S1   SING  N  N   3  
YIO  C2  C3   SING  N  N   4  
YIO  C2  O2   SING  N  N   5  
YIO  C3  C4   SING  N  N   6  
YIO  C3  O3   SING  N  N   7  
YIO  C4  C5   SING  N  N   8  
YIO  C4  O4   SING  N  N   9  
YIO  C5  C6   SING  N  N  10  
YIO  C5  O5   SING  N  N  11  
YIO  C6  O6   SING  N  N  12  
YIO  C1  H1   SING  N  N  13  
YIO  C2  H2   SING  N  N  14  
YIO  C3  H3   SING  N  N  15  
YIO  O2  HO2  SING  N  N  16  
YIO  C4  H4   SING  N  N  17  
YIO  O3  HO3  SING  N  N  18  
YIO  C5  H5   SING  N  N  19  
YIO  O4  HO4  SING  N  N  20  
YIO  C6  H61  SING  N  N  21  
YIO  C6  H62  SING  N  N  22  
YIO  S1  HS1  SING  N  N  23  
YIO  O6  HO6  SING  N  N  24  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YIO  SMILES_CANONICAL  CACTVS                3.352  "OC[C@H]1O[C@@H](S)[C@H](O)[C@@H](O)[C@H]1O"  
YIO  SMILES            CACTVS                3.352  "OC[CH]1O[CH](S)[CH](O)[CH](O)[CH]1O"  
YIO  SMILES_CANONICAL  "OpenEye OEToolkits"  1.6.1  "C([C@@H]1[C@@H]([C@@H]([C@H]([C@@H](O1)S)O)O)O)O"  
YIO  SMILES            "OpenEye OEToolkits"  1.6.1  "C(C1C(C(C(C(O1)S)O)O)O)O"  
YIO  InChI             InChI                 1.03   "InChI=1S/C6H12O5S/c7-1-2-3(8)4(9)5(10)6(12)11-2/h2-10,12H,1H2/t2-,3+,4+,5-,6+/m1/s1"  
YIO  InChIKey          InChI                 1.03   JUSMHIGDXPKSID-PHYPRBDBSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YIO  "SYSTEMATIC NAME"            "OpenEye OEToolkits"  1.6.1  "(2R,3R,4S,5R,6S)-2-(hydroxymethyl)-6-sulfanyl-oxane-3,4,5-triol"  
YIO  "IUPAC CARBOHYDRATE SYMBOL"  PDB-CARE              1.0    b-D-Galp1SH  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
YIO  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
YIO  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
YIO  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
YIO  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YIO  "Create component"          2011-05-16  EBI   
YIO  "Other modification"        2011-05-16  EBI   
YIO  "Modify descriptor"         2011-06-04  RCSB  
YIO  "Other modification"        2020-07-03  RCSB  
YIO  "Modify name"               2020-07-17  RCSB  
YIO  "Modify synonyms"           2020-07-17  RCSB  
YIO  "Modify internal type"      2020-07-17  RCSB  
YIO  "Modify linking type"       2020-07-17  RCSB  
YIO  "Modify atom id"            2020-07-17  RCSB  
YIO  "Modify component atom id"  2020-07-17  RCSB  
YIO  "Modify leaving atom flag"  2020-07-17  RCSB  
##
