data_XOO
# 
_chem_comp.id                                    XOO 
_chem_comp.name                                  "4-{2-[({4-[(2P)-2-(2-aminopyridin-3-yl)-5-phenyl-3H-imidazo[4,5-b]pyridin-3-yl]phenyl}methyl)amino]ethyl}-2-hydroxybenzaldehyde" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C33 H28 N6 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-11-06 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        540.614 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XOO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8UVY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XOO N1  N1  N 0 1 N N N N N N 10.879 7.350  -27.456 5.490   3.575  1.788  N1  XOO 1  
XOO C2  C1  C 0 1 Y N N N N N 9.498  9.528  -29.838 3.654   5.863  -0.242 C2  XOO 2  
XOO C3  C2  C 0 1 Y N N N N N 10.345 10.615 -29.850 3.069   5.053  -1.197 C3  XOO 3  
XOO C21 C3  C 0 1 Y N N N N N 20.059 13.438 -34.310 -6.511  -0.651 0.025  C21 XOO 4  
XOO C22 C4  C 0 1 Y N N N N N 20.839 14.396 -33.684 -7.139  -1.084 -1.131 C22 XOO 5  
XOO C4  C5  C 0 1 Y N N N N N 11.436 10.606 -29.013 3.293   3.687  -1.164 C4  XOO 6  
XOO C5  C6  C 0 1 Y N N N N N 11.659 9.511  -28.181 4.113   3.173  -0.154 C5  XOO 7  
XOO C6  C7  C 0 1 Y N N N N N 12.807 9.472  -27.253 4.386   1.725  -0.072 C6  XOO 8  
XOO C1  C8  C 0 1 Y N N N N N 10.733 8.430  -28.226 4.671   4.061  0.781  C1  XOO 9  
XOO C10 C9  C 0 1 Y N N N N N 16.699 9.733  -25.114 4.552   -2.731 0.108  C10 XOO 10 
XOO C11 C10 C 0 1 Y N N N N N 14.839 9.735  -26.448 4.093   -0.472 -0.022 C11 XOO 11 
XOO C12 C11 C 0 1 Y N N N N N 14.600 10.587 -28.720 2.055   0.921  -0.288 C12 XOO 12 
XOO C13 C12 C 0 1 Y N N N N N 14.384 9.979  -29.938 1.421   0.506  -1.452 C13 XOO 13 
XOO C14 C13 C 0 1 Y N N N N N 14.959 10.516 -31.074 0.059   0.683  -1.596 C14 XOO 14 
XOO C15 C14 C 0 1 Y N N N N N 15.754 11.647 -30.995 -0.674  1.275  -0.584 C15 XOO 15 
XOO C16 C15 C 0 1 Y N N N N N 15.985 12.230 -29.759 -0.046  1.690  0.576  C16 XOO 16 
XOO C17 C16 C 0 1 Y N N N N N 15.398 11.711 -28.618 1.316   1.515  0.727  C17 XOO 17 
XOO C18 C17 C 0 1 N N N N N N 16.395 12.224 -32.227 -2.159  1.468  -0.745 C18 XOO 18 
XOO C19 C18 C 0 1 N N N N N N 18.046 13.823 -32.990 -4.319  0.440  -0.373 C19 XOO 19 
XOO C20 C19 C 0 1 N N N N N N 18.950 12.756 -33.558 -5.019  -0.808 0.170  C20 XOO 20 
XOO C23 C20 C 0 1 Y N N N N N 21.847 15.037 -34.357 -8.501  -0.941 -1.279 C23 XOO 21 
XOO C24 C21 C 0 1 Y N N N N N 22.074 14.763 -35.718 -9.255  -0.355 -0.255 C24 XOO 22 
XOO C25 C22 C 0 1 N N N N N N 23.166 15.449 -36.395 -10.707 -0.199 -0.404 C25 XOO 23 
XOO C26 C23 C 0 1 Y N N N N N 21.278 13.787 -36.350 -8.613  0.082  0.915  C26 XOO 24 
XOO C27 C24 C 0 1 Y N N N N N 20.266 13.151 -35.650 -7.241  -0.071 1.044  C27 XOO 25 
XOO C28 C25 C 0 1 Y N N N N N 18.132 10.108 -25.000 4.053   -4.127 0.107  C28 XOO 26 
XOO C29 C26 C 0 1 Y N N N N N 18.685 11.012 -25.904 2.690   -4.383 -0.027 C29 XOO 27 
XOO C30 C27 C 0 1 Y N N N N N 20.020 11.380 -25.822 2.231   -5.685 -0.028 C30 XOO 28 
XOO C31 C28 C 0 1 Y N N N N N 20.823 10.833 -24.849 3.122   -6.734 0.103  C31 XOO 29 
XOO C32 C29 C 0 1 Y N N N N N 20.296 9.923  -23.958 4.477   -6.487 0.236  C32 XOO 30 
XOO C33 C30 C 0 1 Y N N N N N 18.962 9.558  -24.031 4.947   -5.189 0.233  C33 XOO 31 
XOO C7  C31 C 0 1 Y N N N N N 14.050 9.111  -25.518 5.460   -0.161 0.114  C7  XOO 32 
XOO C8  C32 C 0 1 Y N N N N N 14.631 8.764  -24.300 6.385   -1.203 0.251  C8  XOO 33 
XOO C9  C33 C 0 1 Y N N N N N 15.958 9.082  -24.098 5.921   -2.491 0.247  C9  XOO 34 
XOO N2  N2  N 0 1 Y N N N N N 9.675  8.445  -29.067 4.428   5.359  0.701  N2  XOO 35 
XOO N3  N3  N 0 1 Y N N N N N 12.768 8.944  -26.038 5.573   1.188  0.079  N3  XOO 36 
XOO N4  N4  N 0 1 Y N N N N N 16.134 10.044 -26.297 3.690   -1.731 -0.019 N4  XOO 37 
XOO N5  N5  N 0 1 Y N N N N N 14.051 10.000 -27.540 3.435   0.737  -0.136 N5  XOO 38 
XOO N6  N6  N 0 1 N N N N N N 17.309 13.285 -31.851 -2.865  0.287  -0.232 N6  XOO 39 
XOO O2  O1  O 0 1 N N N N N N 21.408 13.448 -37.666 -9.332  0.652  1.914  O2  XOO 40 
XOO H1  H1  H 0 1 N N N N N N 10.140 6.703  -27.645 5.956   4.191  2.374  H1  XOO 41 
XOO H2  H2  H 0 1 N N N N N N 11.759 6.917  -27.652 5.594   2.618  1.909  H2  XOO 42 
XOO H3  H3  H 0 1 N N N N N N 8.638  9.550  -30.490 3.478   6.928  -0.269 H3  XOO 43 
XOO H4  H4  H 0 1 N N N N N N 10.156 11.455 -30.502 2.441   5.483  -1.964 H4  XOO 44 
XOO H19 H5  H 0 1 N N N N N N 20.650 14.642 -32.649 -6.558  -1.536 -1.921 H19 XOO 45 
XOO H5  H6  H 0 1 N N N N N N 12.117 11.444 -29.001 2.847   3.035  -1.899 H5  XOO 46 
XOO H8  H7  H 0 1 N N N N N N 13.772 9.092  -30.004 1.993   0.044  -2.243 H8  XOO 47 
XOO H9  H8  H 0 1 N N N N N N 14.787 10.049 -32.033 -0.434  0.360  -2.501 H9  XOO 48 
XOO H10 H9  H 0 1 N N N N N N 16.627 13.095 -29.686 -0.621  2.152  1.365  H10 XOO 49 
XOO H11 H10 H 0 1 N N N N N N 15.562 12.179 -27.659 1.806   1.839  1.633  H11 XOO 50 
XOO H12 H11 H 0 1 N N N N N N 16.949 11.434 -32.755 -2.474  2.350  -0.187 H12 XOO 51 
XOO H13 H12 H 0 1 N N N N N N 15.616 12.630 -32.889 -2.396  1.603  -1.801 H13 XOO 52 
XOO H15 H13 H 0 1 N N N N N N 17.336 14.151 -33.763 -4.571  0.567  -1.426 H15 XOO 53 
XOO H16 H14 H 0 1 N N N N N N 18.653 14.680 -32.662 -4.649  1.314  0.187  H16 XOO 54 
XOO H18 H15 H 0 1 N N N N N N 19.370 12.150 -32.742 -4.768  -0.935 1.223  H18 XOO 55 
XOO H17 H16 H 0 1 N N N N N N 18.380 12.108 -34.240 -4.689  -1.683 -0.390 H17 XOO 56 
XOO H20 H17 H 0 1 N N N N N N 22.468 15.754 -33.841 -8.986  -1.279 -2.182 H20 XOO 57 
XOO H21 H18 H 0 1 N N N N N N 23.693 16.224 -35.857 -11.197 -0.536 -1.306 H21 XOO 58 
XOO H23 H21 H 0 1 N N N N N N 19.637 12.430 -36.150 -6.743  0.264  1.942  H23 XOO 59 
XOO H24 H22 H 0 1 N N N N N N 18.064 11.433 -26.681 1.993   -3.564 -0.129 H24 XOO 60 
XOO H25 H23 H 0 1 N N N N N N 20.428 12.095 -26.521 1.175   -5.884 -0.131 H25 XOO 61 
XOO H26 H24 H 0 1 N N N N N N 21.863 11.116 -24.783 2.759   -7.752 0.102  H26 XOO 62 
XOO H27 H25 H 0 1 N N N N N N 20.929 9.491  -23.197 5.168   -7.310 0.339  H27 XOO 63 
XOO H28 H26 H 0 1 N N N N N N 18.564 8.840  -23.329 6.005   -4.997 0.333  H28 XOO 64 
XOO H6  H27 H 0 1 N N N N N N 14.058 8.260  -23.535 7.440   -0.996 0.357  H6  XOO 65 
XOO H7  H28 H 0 1 N N N N N N 16.434 8.833  -23.161 6.609   -3.317 0.351  H7  XOO 66 
XOO H14 H29 H 0 1 N N N N N N 16.784 14.025 -31.431 -2.544  -0.553 -0.689 H14 XOO 67 
XOO H22 H31 H 0 1 N N N N N N 22.146 13.913 -38.042 -9.664  0.022  2.569  H22 XOO 68 
XOO O1  O2  O 0 1 N Y N N N N 23.547 15.178 -37.625 -11.357 0.310  0.485  O1  XOO 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XOO N1  C1  SING N N 1  
XOO C1  N2  DOUB Y N 2  
XOO C1  C5  SING Y N 3  
XOO N2  C2  SING Y N 4  
XOO C2  C3  DOUB Y N 5  
XOO C3  C4  SING Y N 6  
XOO C4  C5  DOUB Y N 7  
XOO C5  C6  SING N N 8  
XOO C6  N3  DOUB Y N 9  
XOO C6  N5  SING Y N 10 
XOO N3  C7  SING Y N 11 
XOO C7  C8  DOUB Y N 12 
XOO C7  C11 SING Y N 13 
XOO C8  C9  SING Y N 14 
XOO C9  C10 DOUB Y N 15 
XOO C10 N4  SING Y N 16 
XOO C10 C28 SING N N 17 
XOO N4  C11 DOUB Y N 18 
XOO C11 N5  SING Y N 19 
XOO N5  C12 SING N N 20 
XOO C12 C13 DOUB Y N 21 
XOO C12 C17 SING Y N 22 
XOO C13 C14 SING Y N 23 
XOO C14 C15 DOUB Y N 24 
XOO C15 C16 SING Y N 25 
XOO C15 C18 SING N N 26 
XOO C16 C17 DOUB Y N 27 
XOO C18 N6  SING N N 28 
XOO N6  C19 SING N N 29 
XOO C19 C20 SING N N 30 
XOO C20 C21 SING N N 31 
XOO C21 C22 DOUB Y N 32 
XOO C21 C27 SING Y N 33 
XOO C22 C23 SING Y N 34 
XOO C23 C24 DOUB Y N 35 
XOO C24 C25 SING N N 36 
XOO C24 C26 SING Y N 37 
XOO C26 O2  SING N N 38 
XOO C26 C27 DOUB Y N 39 
XOO C28 C29 DOUB Y N 40 
XOO C28 C33 SING Y N 41 
XOO C29 C30 SING Y N 42 
XOO C30 C31 DOUB Y N 43 
XOO C31 C32 SING Y N 44 
XOO C32 C33 DOUB Y N 45 
XOO N1  H1  SING N N 46 
XOO N1  H2  SING N N 47 
XOO C2  H3  SING N N 48 
XOO C3  H4  SING N N 49 
XOO C22 H19 SING N N 50 
XOO C4  H5  SING N N 51 
XOO C13 H8  SING N N 52 
XOO C14 H9  SING N N 53 
XOO C16 H10 SING N N 54 
XOO C17 H11 SING N N 55 
XOO C18 H12 SING N N 56 
XOO C18 H13 SING N N 57 
XOO C19 H15 SING N N 58 
XOO C19 H16 SING N N 59 
XOO C20 H18 SING N N 60 
XOO C20 H17 SING N N 61 
XOO C23 H20 SING N N 62 
XOO C25 H21 SING N N 63 
XOO C27 H23 SING N N 64 
XOO C29 H24 SING N N 65 
XOO C30 H25 SING N N 66 
XOO C31 H26 SING N N 67 
XOO C32 H27 SING N N 68 
XOO C33 H28 SING N N 69 
XOO C8  H6  SING N N 70 
XOO C9  H7  SING N N 71 
XOO N6  H14 SING N N 72 
XOO O2  H22 SING N N 73 
XOO C25 O1  DOUB N N 74 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XOO SMILES           ACDLabs              12.01 "O=Cc1ccc(cc1O)CCNCc1ccc(cc1)n1c2nc(ccc2nc1c1cccnc1N)c1ccccc1"                                                                                                                                         
XOO InChI            InChI                1.06  "InChI=1S/C33H28N6O2/c34-31-27(7-4-17-36-31)32-38-29-15-14-28(24-5-2-1-3-6-24)37-33(29)39(32)26-12-9-23(10-13-26)20-35-18-16-22-8-11-25(21-40)30(41)19-22/h1-15,17,19,21,35,41H,16,18,20H2,(H2,34,36)" 
XOO InChIKey         InChI                1.06  OMBAVJOHMDVMKX-UHFFFAOYSA-N                                                                                                                                                                            
XOO SMILES_CANONICAL CACTVS               3.385 "Nc1ncccc1c2nc3ccc(nc3n2c4ccc(CNCCc5ccc(C=O)c(O)c5)cc4)c6ccccc6"                                                                                                                                       
XOO SMILES           CACTVS               3.385 "Nc1ncccc1c2nc3ccc(nc3n2c4ccc(CNCCc5ccc(C=O)c(O)c5)cc4)c6ccccc6"                                                                                                                                       
XOO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccc3c(n2)n(c(n3)c4cccnc4N)c5ccc(cc5)CNCCc6ccc(c(c6)O)C=O"                                                                                                                                 
XOO SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccc3c(n2)n(c(n3)c4cccnc4N)c5ccc(cc5)CNCCc6ccc(c(c6)O)C=O"                                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XOO "SYSTEMATIC NAME" ACDLabs              12.01 "4-{2-[({4-[(2P)-2-(2-aminopyridin-3-yl)-5-phenyl-3H-imidazo[4,5-b]pyridin-3-yl]phenyl}methyl)amino]ethyl}-2-hydroxybenzaldehyde" 
XOO "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[2-[[4-[2-(2-azanylpyridin-3-yl)-5-phenyl-imidazo[4,5-b]pyridin-3-yl]phenyl]methylamino]ethyl]-2-oxidanyl-benzaldehyde"        
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XOO "Create component" 2023-11-06 RCSB 
XOO "Initial release"  2024-09-04 RCSB 
XOO "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            XOO 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C25 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
