data_WBO
# 
_chem_comp.id                                    WBO 
_chem_comp.name                                  "2-cyano-D-phenylalanyl-2,4-dichloro-N-[(2S)-4-{[4-(dimethylamino)butyl]amino}-1-(4-fluorophenyl)-4-oxobutan-2-yl]-D-phenylalaninamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C35 H41 Cl2 F N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-29 
_chem_comp.pdbx_modified_date                    2024-12-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        683.643 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WBO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8UDP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WBO C1  C1  C  0 1 N N N N N N 8.454  -0.422  21.656 2.091   1.139  -0.492 C1  WBO 1  
WBO C2  C2  C  0 1 N N R N N N 8.778  -2.163  23.292 0.285   0.143  0.806  C2  WBO 2  
WBO C3  C3  C  0 1 N N N N N N 8.958  -1.941  24.796 0.658   0.421  2.264  C3  WBO 3  
WBO N4  N1  N  0 1 N N N N N N 9.531  -13.291 16.747 -10.349 2.139  -2.197 N4  WBO 4  
WBO C5  C4  C  0 1 Y N N N N N 6.647  -1.313  25.601 2.663   1.903  2.032  C5  WBO 5  
WBO N6  N2  N  0 1 N N N N N N 6.881  -0.881  16.919 3.885   -2.757 -2.080 N6  WBO 6  
WBO C8  C5  C  0 1 Y N N N N N 7.297  1.379   25.663 1.216   4.104  2.877  C8  WBO 7  
WBO C9  C6  C  0 1 Y N N N N N 8.253  0.448   25.268 0.604   2.868  2.785  C9  WBO 8  
WBO C12 C7  C  0 1 N N N N N N 9.038  -6.855  22.664 -1.879  -3.511 2.348  C12 WBO 9  
WBO C13 C8  C  0 1 Y N N N N N 9.021  -6.670  24.187 -0.458  -3.880 2.010  C13 WBO 10 
WBO C26 C9  C  0 1 N N N N N N 8.830  0.713   19.462 2.981   0.622  -2.749 C26 WBO 11 
WBO C27 C10 C  0 1 Y N N N N N 9.707  -0.452  18.984 4.241   0.387  -3.542 C27 WBO 12 
WBO C22 C11 C  0 1 N N N N N N 9.491  -10.001 18.302 -7.762  0.125  -0.287 C22 WBO 13 
WBO C23 C12 C  0 1 N N N N N N 9.955  -10.927 17.183 -8.327  1.011  -1.400 C23 WBO 14 
WBO C25 C13 C  0 1 N N R N N N 8.923  0.860   20.979 3.347   1.023  -1.318 C25 WBO 15 
WBO C10 C14 C  0 1 N N N N N N 9.606  -3.376  22.874 -0.491  -1.145 0.723  C10 WBO 16 
WBO C11 C15 C  0 1 N N S N N N 9.743  -5.643  22.045 -2.412  -2.527 1.305  C11 WBO 17 
WBO C14 C16 C  0 1 Y N N N N N 10.062 -7.162  24.969 -0.201  -4.961 1.188  C14 WBO 18 
WBO C15 C17 C  0 1 Y N N N N N 10.044 -6.989  26.348 1.102   -5.300 0.877  C15 WBO 19 
WBO C16 C18 C  0 1 Y N N N N N 8.987  -6.319  26.950 2.151   -4.556 1.390  C16 WBO 20 
WBO C17 C19 C  0 1 Y N N N N N 7.948  -5.827  26.173 1.893   -3.474 2.213  C17 WBO 21 
WBO C18 C20 C  0 1 Y N N N N N 7.968  -6.003  24.798 0.589   -3.134 2.519  C18 WBO 22 
WBO C19 C21 C  0 1 N N N N N N 9.855  -5.772  20.527 -3.892  -2.249 1.576  C19 WBO 23 
WBO C20 C22 C  0 1 N N N N N N 10.519 -7.099  20.165 -4.448  -1.377 0.480  C20 WBO 24 
WBO C21 C23 C  0 1 N N N N N N 10.630 -9.084  18.760 -6.282  -0.153 -0.557 C21 WBO 25 
WBO C24 C24 C  0 1 N N N N N N 8.896  -11.996 16.932 -9.807  1.289  -1.129 C24 WBO 26 
WBO C28 C25 C  0 1 Y N N N N N 9.248  -1.298  17.982 4.870   -0.859 -3.502 C28 WBO 27 
WBO C29 C26 C  0 1 N N N N N N 7.881  -1.054  17.374 4.321   -1.918 -2.709 C29 WBO 28 
WBO C30 C27 C  0 1 Y N N N N N 10.031 -2.358  17.536 6.037   -1.069 -4.240 C30 WBO 29 
WBO C31 C28 C  0 1 Y N N N N N 11.285 -2.584  18.100 6.560   -0.045 -5.002 C31 WBO 30 
WBO C32 C29 C  0 1 Y N N N N N 11.750 -1.738  19.095 5.932   1.187  -5.036 C32 WBO 31 
WBO C33 C30 C  0 1 Y N N N N N 10.965 -0.677  19.540 4.772   1.400  -4.312 C33 WBO 32 
WBO C34 C31 C  0 1 N N N N N N 9.247  -13.786 15.413 -10.356 1.428  -3.483 C34 WBO 33 
WBO C35 C32 C  0 1 N N N N N N 9.038  -14.229 17.742 -11.693 2.622  -1.855 C35 WBO 34 
WBO C4  C33 C  0 1 Y N N N N N 7.926  -0.903  25.240 1.326   1.768  2.363  C4  WBO 35 
WBO C6  C34 C  0 1 Y N N N N N 5.695  -0.386  25.996 3.276   3.139  2.123  C6  WBO 36 
WBO C7  C35 C  0 1 Y N N N N N 6.019  0.961   26.028 2.552   4.240  2.546  C7  WBO 37 
WBO CL1 CL1 CL 0 0 N N N N N N 6.219  -2.985  25.563 3.572   0.520  1.509  CL1 WBO 38 
WBO CL2 CL2 CL 0 0 N N N N N N 4.816  2.102   26.525 3.321   5.793  2.661  CL2 WBO 39 
WBO F1  F1  F  0 1 N N N N N N 8.959  -6.145  28.289 3.425   -4.887 1.087  F1  WBO 40 
WBO N1  N3  N  0 1 N N N N N N 9.198  -0.956  22.614 1.506   0.031  0.003  N1  WBO 41 
WBO N2  N4  N  0 1 N N N N N N 8.990  -4.458  22.412 -1.657  -1.274 1.386  N2  WBO 42 
WBO N3  N5  N  0 1 N N N N N N 10.042 -7.813  19.148 -5.742  -1.000 0.508  N3  WBO 43 
WBO N5  N6  N  0 1 N N N N N N 8.063  1.941   21.431 4.043   2.316  -1.334 N5  WBO 44 
WBO O1  O1  O  0 1 N N N N N N 7.438  -0.937  21.325 1.610   2.230  -0.270 O1  WBO 45 
WBO O2  O2  O  0 1 N N N N N N 11.458 -7.484  20.773 -3.731  -1.013 -0.429 O2  WBO 46 
WBO O3  O3  O  0 1 N N N N N N 10.786 -3.360  22.978 -0.067  -2.067 0.058  O3  WBO 47 
WBO H1  H1  H  0 1 N N N N N N 7.717  -2.364  23.084 -0.326  0.961  0.424  H1  WBO 48 
WBO H2  H2  H  0 1 N N N N N N 8.796  -2.885  25.336 -0.244  0.417  2.876  H2  WBO 49 
WBO H3  H3  H  0 1 N N N N N N 9.973  -1.571  25.001 1.341   -0.351 2.618  H3  WBO 50 
WBO H5  H5  H  0 1 N N N N N N 7.547  2.429   25.687 0.651   4.964  3.206  H5  WBO 51 
WBO H6  H6  H  0 1 N N N N N N 9.243  0.773   24.985 -0.440  2.762  3.044  H6  WBO 52 
WBO H7  H7  H  0 1 N N N N N N 8.007  -6.921  22.285 -2.497  -4.409 2.349  H7  WBO 53 
WBO H8  H8  H  0 1 N N N N N N 9.583  -7.775  22.406 -1.910  -3.048 3.334  H8  WBO 54 
WBO H9  H9  H  0 1 N N N N N N 9.172  1.644   18.986 2.403   1.421  -3.213 H9  WBO 55 
WBO H10 H10 H  0 1 N N N N N N 7.785  0.520   19.180 2.388   -0.292 -2.730 H10 WBO 56 
WBO H11 H11 H  0 1 N N N N N N 8.657  -9.384  17.936 -7.867  0.635  0.671  H11 WBO 57 
WBO H12 H12 H  0 1 N N N N N N 9.152  -10.608 19.155 -8.310  -0.817 -0.259 H12 WBO 58 
WBO H13 H13 H  0 1 N N N N N N 10.900 -11.409 17.475 -7.779  1.953  -1.427 H13 WBO 59 
WBO H14 H14 H  0 1 N N N N N N 10.110 -10.342 16.264 -8.222  0.501  -2.357 H14 WBO 60 
WBO H15 H15 H  0 1 N N N N N N 9.967  1.060   21.261 3.999   0.265  -0.883 H15 WBO 61 
WBO H16 H16 H  0 1 N N N N N N 10.757 -5.578  22.466 -2.299  -2.955 0.309  H16 WBO 62 
WBO H17 H17 H  0 1 N N N N N N 10.887 -7.680  24.503 -1.020  -5.542 0.788  H17 WBO 63 
WBO H18 H18 H  0 1 N N N N N N 10.852 -7.376  26.951 1.302   -6.145 0.235  H18 WBO 64 
WBO H19 H19 H  0 1 N N N N N N 7.124  -5.307  26.639 2.711   -2.893 2.614  H19 WBO 65 
WBO H20 H20 H  0 1 N N N N N N 7.157  -5.618  24.197 0.387   -2.286 3.157  H20 WBO 66 
WBO H21 H21 H  0 1 N N N N N N 10.461 -4.942  20.134 -4.440  -3.191 1.604  H21 WBO 67 
WBO H22 H22 H  0 1 N N N N N N 8.849  -5.734  20.083 -3.997  -1.739 2.534  H22 WBO 68 
WBO H23 H23 H  0 1 N N N N N N 11.151 -9.533  19.618 -6.178  -0.662 -1.515 H23 WBO 69 
WBO H24 H24 H  0 1 N N N N N N 11.343 -8.932  17.936 -5.735  0.789  -0.585 H24 WBO 70 
WBO H25 H25 H  0 1 N N N N N N 8.325  -11.738 16.028 -9.911  1.798  -0.171 H25 WBO 71 
WBO H26 H26 H  0 1 N N N N N N 8.215  -12.044 17.795 -10.354 0.347  -1.101 H26 WBO 72 
WBO H27 H27 H  0 1 N N N N N N 9.667  -3.006  16.752 6.528   -2.030 -4.214 H27 WBO 73 
WBO H28 H28 H  0 1 N N N N N N 11.891 -3.413  17.764 7.463   -0.206 -5.573 H28 WBO 74 
WBO H29 H29 H  0 1 N N N N N N 12.726 -1.902  19.527 6.346   1.985  -5.635 H29 WBO 75 
WBO H30 H30 H  0 1 N N N N N N 11.333 -0.026  20.319 4.284   2.363  -4.347 H30 WBO 76 
WBO H31 H31 H  0 1 N N N N N N 9.728  -14.766 15.275 -10.974 0.534  -3.400 H31 WBO 77 
WBO H32 H32 H  0 1 N N N N N N 8.160  -13.890 15.285 -10.762 2.080  -4.256 H32 WBO 78 
WBO H33 H33 H  0 1 N N N N N N 9.638  -13.077 14.668 -9.337  1.143  -3.746 H33 WBO 79 
WBO H34 H34 H  0 1 N N N N N N 9.258  -13.845 18.749 -11.647 3.204  -0.935 H34 WBO 80 
WBO H35 H35 H  0 1 N N N N N N 7.951  -14.350 17.625 -12.071 3.249  -2.663 H35 WBO 81 
WBO H36 H36 H  0 1 N N N N N N 9.532  -15.202 17.605 -12.359 1.771  -1.714 H36 WBO 82 
WBO H37 H37 H  0 1 N N N N N N 4.705  -0.712  26.278 4.319   3.245  1.865  H37 WBO 83 
WBO H38 H38 H  0 1 N N N N N N 10.060 -0.519  22.871 1.893   -0.842 -0.171 H38 WBO 84 
WBO H39 H39 H  0 1 N N N N N N 7.995  -4.456  22.316 -1.996  -0.536 1.917  H39 WBO 85 
WBO H40 H40 H  0 1 N N N N N N 9.257  -7.465  18.636 -6.315  -1.291 1.235  H40 WBO 86 
WBO H41 H41 H  0 1 N N N N N N 8.131  2.029   22.425 4.921   2.248  -1.827 H41 WBO 87 
WBO H42 H42 H  0 1 N N N N N N 8.349  2.797   21.001 3.459   3.036  -1.733 H42 WBO 88 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WBO C34 N4  SING N N 1  
WBO N4  C24 SING N N 2  
WBO N4  C35 SING N N 3  
WBO N6  C29 TRIP N N 4  
WBO C24 C23 SING N N 5  
WBO C23 C22 SING N N 6  
WBO C29 C28 SING N N 7  
WBO C30 C28 DOUB Y N 8  
WBO C30 C31 SING Y N 9  
WBO C28 C27 SING Y N 10 
WBO C31 C32 DOUB Y N 11 
WBO C22 C21 SING N N 12 
WBO C21 N3  SING N N 13 
WBO C27 C26 SING N N 14 
WBO C27 C33 DOUB Y N 15 
WBO C32 C33 SING Y N 16 
WBO N3  C20 SING N N 17 
WBO C26 C25 SING N N 18 
WBO C20 C19 SING N N 19 
WBO C20 O2  DOUB N N 20 
WBO C19 C11 SING N N 21 
WBO C25 N5  SING N N 22 
WBO C25 C1  SING N N 23 
WBO O1  C1  DOUB N N 24 
WBO C1  N1  SING N N 25 
WBO C11 N2  SING N N 26 
WBO C11 C12 SING N N 27 
WBO N2  C10 SING N N 28 
WBO N1  C2  SING N N 29 
WBO C12 C13 SING N N 30 
WBO C10 O3  DOUB N N 31 
WBO C10 C2  SING N N 32 
WBO C2  C3  SING N N 33 
WBO C13 C18 DOUB Y N 34 
WBO C13 C14 SING Y N 35 
WBO C3  C4  SING N N 36 
WBO C18 C17 SING Y N 37 
WBO C14 C15 DOUB Y N 38 
WBO C4  C9  DOUB Y N 39 
WBO C4  C5  SING Y N 40 
WBO C9  C8  SING Y N 41 
WBO CL1 C5  SING N N 42 
WBO C5  C6  DOUB Y N 43 
WBO C8  C7  DOUB Y N 44 
WBO C6  C7  SING Y N 45 
WBO C7  CL2 SING N N 46 
WBO C17 C16 DOUB Y N 47 
WBO C15 C16 SING Y N 48 
WBO C16 F1  SING N N 49 
WBO C2  H1  SING N N 50 
WBO C3  H2  SING N N 51 
WBO C3  H3  SING N N 52 
WBO C8  H5  SING N N 53 
WBO C9  H6  SING N N 54 
WBO C12 H7  SING N N 55 
WBO C12 H8  SING N N 56 
WBO C26 H9  SING N N 57 
WBO C26 H10 SING N N 58 
WBO C22 H11 SING N N 59 
WBO C22 H12 SING N N 60 
WBO C23 H13 SING N N 61 
WBO C23 H14 SING N N 62 
WBO C25 H15 SING N N 63 
WBO C11 H16 SING N N 64 
WBO C14 H17 SING N N 65 
WBO C15 H18 SING N N 66 
WBO C17 H19 SING N N 67 
WBO C18 H20 SING N N 68 
WBO C19 H21 SING N N 69 
WBO C19 H22 SING N N 70 
WBO C21 H23 SING N N 71 
WBO C21 H24 SING N N 72 
WBO C24 H25 SING N N 73 
WBO C24 H26 SING N N 74 
WBO C30 H27 SING N N 75 
WBO C31 H28 SING N N 76 
WBO C32 H29 SING N N 77 
WBO C33 H30 SING N N 78 
WBO C34 H31 SING N N 79 
WBO C34 H32 SING N N 80 
WBO C34 H33 SING N N 81 
WBO C35 H34 SING N N 82 
WBO C35 H35 SING N N 83 
WBO C35 H36 SING N N 84 
WBO C6  H37 SING N N 85 
WBO N1  H38 SING N N 86 
WBO N2  H39 SING N N 87 
WBO N3  H40 SING N N 88 
WBO N5  H41 SING N N 89 
WBO N5  H42 SING N N 90 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WBO SMILES           ACDLabs              12.01 "Clc1cc(Cl)ccc1CC(NC(=O)C(N)Cc1ccccc1C#N)C(=O)NC(Cc1ccc(F)cc1)CC(=O)NCCCCN(C)C"                                                                                                                                                                                       
WBO InChI            InChI                1.06  "InChI=1S/C35H41Cl2FN6O3/c1-44(2)16-6-5-15-41-33(45)21-29(17-23-9-13-28(38)14-10-23)42-35(47)32(19-25-11-12-27(36)20-30(25)37)43-34(46)31(40)18-24-7-3-4-8-26(24)22-39/h3-4,7-14,20,29,31-32H,5-6,15-19,21,40H2,1-2H3,(H,41,45)(H,42,47)(H,43,46)/t29-,31+,32+/m0/s1" 
WBO InChIKey         InChI                1.06  GHJNNBYANWGVQR-JIZBBPSKSA-N                                                                                                                                                                                                                                           
WBO SMILES_CANONICAL CACTVS               3.385 "CN(C)CCCCNC(=O)C[C@H](Cc1ccc(F)cc1)NC(=O)[C@@H](Cc2ccc(Cl)cc2Cl)NC(=O)[C@H](N)Cc3ccccc3C#N"                                                                                                                                                                          
WBO SMILES           CACTVS               3.385 "CN(C)CCCCNC(=O)C[CH](Cc1ccc(F)cc1)NC(=O)[CH](Cc2ccc(Cl)cc2Cl)NC(=O)[CH](N)Cc3ccccc3C#N"                                                                                                                                                                              
WBO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)CCCCNC(=O)C[C@H](Cc1ccc(cc1)F)NC(=O)[C@@H](Cc2ccc(cc2Cl)Cl)NC(=O)[C@@H](Cc3ccccc3C#N)N"                                                                                                                                                                         
WBO SMILES           "OpenEye OEToolkits" 2.0.7 "CN(C)CCCCNC(=O)CC(Cc1ccc(cc1)F)NC(=O)C(Cc2ccc(cc2Cl)Cl)NC(=O)C(Cc3ccccc3C#N)N"                                                                                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WBO "SYSTEMATIC NAME" ACDLabs              12.01 "2-cyano-D-phenylalanyl-2,4-dichloro-N-[(2S)-4-{[4-(dimethylamino)butyl]amino}-1-(4-fluorophenyl)-4-oxobutan-2-yl]-D-phenylalaninamide"                                        
WBO "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-3-[[(2~{R})-2-[[(2~{R})-2-azanyl-3-(2-cyanophenyl)propanoyl]amino]-3-(2,4-dichlorophenyl)propanoyl]amino]-~{N}-[4-(dimethylamino)butyl]-4-(4-fluorophenyl)butanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WBO "Create component" 2023-09-29 RCSB 
WBO "Initial release"  2025-01-01 RCSB 
# 
