data_VBO
# 
_chem_comp.id                                    VBO 
_chem_comp.name                                  "methyl 3-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)propanoate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C8 H10 N2 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-08-29 
_chem_comp.pdbx_modified_date                    2022-10-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        198.176 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VBO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7FLF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VBO N1  N1  N 0 1 N N N 43.847 23.336 24.042 2.798  -0.911 0.245  N1  VBO 1  
VBO C7  C1  C 0 1 N N N 43.246 24.555 24.370 1.500  -0.966 -0.108 C7  VBO 2  
VBO O1  O1  O 0 1 N N N 44.820 29.040 26.239 -3.217 -0.054 -1.123 O1  VBO 3  
VBO C1  C2  C 0 1 N N N 44.874 28.138 27.052 -2.912 0.116  0.034  C1  VBO 4  
VBO C5  C3  C 0 1 N N N 45.457 23.653 25.814 2.750  1.452  -0.083 C5  VBO 5  
VBO C6  C4  C 0 1 N N N 44.963 22.845 24.737 3.447  0.271  0.268  C6  VBO 6  
VBO C4  C5  C 0 1 N N N 44.898 24.806 26.135 1.449  1.369  -0.433 C4  VBO 7  
VBO C3  C6  C 0 1 N N N 43.267 26.549 25.836 -0.585 0.059  -0.822 C3  VBO 8  
VBO O3  O2  O 0 1 N N N 42.283 24.981 23.758 0.928  -2.039 -0.123 O3  VBO 9  
VBO C2  C7  C 0 1 N N N 43.799 27.069 27.205 -1.459 0.210  0.424  C2  VBO 10 
VBO O2  O3  O 0 1 N N N 45.445 21.810 24.409 4.621  0.322  0.587  O2  VBO 11 
VBO N   N2  N 0 1 N N N 43.820 25.276 25.450 0.827  0.150  -0.443 N   VBO 12 
VBO O   O4  O 0 1 N N N 45.975 28.168 27.853 -3.867 0.222  0.971  O   VBO 13 
VBO C   C8  C 0 1 N N N 46.986 29.148 27.736 -5.244 0.123  0.523  C   VBO 14 
VBO H1  H1  H 0 1 N N N 43.470 22.797 23.289 3.267  -1.724 0.488  H1  VBO 15 
VBO H2  H2  H 0 1 N N N 46.311 23.309 26.379 3.253  2.408  -0.071 H2  VBO 16 
VBO H3  H3  H 0 1 N N N 45.302 25.384 26.953 0.901  2.260  -0.702 H3  VBO 17 
VBO H4  H4  H 0 1 N N N 43.520 27.288 25.061 -0.776 -0.910 -1.284 H4  VBO 18 
VBO H5  H5  H 0 1 N N N 42.174 26.448 25.903 -0.823 0.852  -1.531 H5  VBO 19 
VBO H6  H6  H 0 1 N N N 42.957 27.495 27.770 -1.269 1.179  0.886  H6  VBO 20 
VBO H7  H7  H 0 1 N N N 44.223 26.221 27.762 -1.222 -0.583 1.133  H7  VBO 21 
VBO H8  H8  H 0 1 N N N 47.766 28.962 28.489 -5.451 0.915  -0.197 H8  VBO 22 
VBO H9  H9  H 0 1 N N N 47.428 29.100 26.730 -5.403 -0.847 0.050  H9  VBO 23 
VBO H10 H10 H 0 1 N N N 46.550 30.145 27.898 -5.913 0.224  1.377  H10 VBO 24 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VBO O3 C7  DOUB N N 1  
VBO N1 C7  SING N N 2  
VBO N1 C6  SING N N 3  
VBO C7 N   SING N N 4  
VBO O2 C6  DOUB N N 5  
VBO C6 C5  SING N N 6  
VBO N  C3  SING N N 7  
VBO N  C4  SING N N 8  
VBO C5 C4  DOUB N N 9  
VBO C3 C2  SING N N 10 
VBO O1 C1  DOUB N N 11 
VBO C1 C2  SING N N 12 
VBO C1 O   SING N N 13 
VBO C  O   SING N N 14 
VBO N1 H1  SING N N 15 
VBO C5 H2  SING N N 16 
VBO C4 H3  SING N N 17 
VBO C3 H4  SING N N 18 
VBO C3 H5  SING N N 19 
VBO C2 H6  SING N N 20 
VBO C2 H7  SING N N 21 
VBO C  H8  SING N N 22 
VBO C  H9  SING N N 23 
VBO C  H10 SING N N 24 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VBO SMILES           ACDLabs              12.01 "O=C(CCN1C=CC(=O)NC1=O)OC"                                                            
VBO InChI            InChI                1.06  "InChI=1S/C8H10N2O4/c1-14-7(12)3-5-10-4-2-6(11)9-8(10)13/h2,4H,3,5H2,1H3,(H,9,11,13)" 
VBO InChIKey         InChI                1.06  WFCIIRXTEXKYTF-UHFFFAOYSA-N                                                           
VBO SMILES_CANONICAL CACTVS               3.385 "COC(=O)CCN1C=CC(=O)NC1=O"                                                            
VBO SMILES           CACTVS               3.385 "COC(=O)CCN1C=CC(=O)NC1=O"                                                            
VBO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COC(=O)CCN1C=CC(=O)NC1=O"                                                            
VBO SMILES           "OpenEye OEToolkits" 2.0.7 "COC(=O)CCN1C=CC(=O)NC1=O"                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VBO "SYSTEMATIC NAME" ACDLabs              12.01 "methyl 3-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)propanoate" 
VBO "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "methyl 3-[2,4-bis(oxidanylidene)pyrimidin-1-yl]propanoate"    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VBO "Create component" 2022-08-29 RCSB 
VBO "Initial release"  2022-11-02 RCSB 
# 
