data_LHO
# 
_chem_comp.id                                    LHO 
_chem_comp.name                                  "2-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-6-methylisoquinoline-1(2H)-thione" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C15 H18 N O6 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-08-19 
_chem_comp.pdbx_modified_date                    2012-06-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        371.345 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LHO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2LHO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LHO P      P      P 0 1 N N N -6.462  5.105  19.322 5.060  1.317  0.338  P      LHO 1  
LHO C1     C1     C 0 1 N N N -5.216  1.024  19.535 -1.316 0.168  -1.209 C1     LHO 2  
LHO N1     N1     N 0 1 N N N -6.086  0.249  19.313 -1.340 -0.628 -0.099 N1     LHO 3  
LHO S1     S1     S 0 1 N N N -7.121  -1.839 19.572 -2.401 -1.737 2.074  S1     LHO 4  
LHO C2     C2     C 0 1 N N N -4.082  0.668  19.878 -2.370 0.910  -1.584 C2     LHO 5  
LHO C3     C3     C 0 1 Y N N -3.889  -0.515 20.033 -3.596 0.874  -0.785 C3     LHO 6  
LHO C4     C4     C 0 1 Y N N -4.820  -1.303 19.919 -3.625 0.050  0.364  C4     LHO 7  
LHO C5     C5     C 0 1 N N N -5.953  -0.932 19.595 -2.425 -0.724 0.695  C5     LHO 8  
LHO C6     C6     C 0 1 Y N N -2.783  -0.891 20.355 -4.722 1.624  -1.126 C6     LHO 9  
LHO C7     C7     C 0 1 Y N N -2.577  -2.067 20.538 -5.850 1.553  -0.338 C7     LHO 10 
LHO C8     C8     C 0 1 Y N N -3.482  -2.860 20.388 -5.877 0.744  0.791  C8     LHO 11 
LHO C9     C9     C 0 1 Y N N -4.597  -2.484 20.113 -4.778 -0.005 1.147  C9     LHO 12 
LHO "C1'"  "C1'"  C 0 1 N N R -7.153  0.661  18.664 -0.145 -1.406 0.239  "C1'"  LHO 13 
LHO C10    C10    C 0 1 N N N -1.391  -2.463 20.901 -7.067 2.362  -0.705 C10    LHO 14 
LHO OP2    OP2    O 0 1 N N N -7.414  5.892  19.123 4.556  2.622  -0.458 O1P    LHO 15 
LHO "C2'"  "C2'"  C 0 1 N N N -8.066  1.260  19.618 0.125  -2.455 -0.856 "C2'"  LHO 16 
LHO OP3    OP3    O 0 1 N Y N -5.961  5.094  20.626 5.563  1.744  1.807  O2P    LHO 17 
LHO "C3'"  "C3'"  C 0 1 N N S -8.753  1.997  18.668 1.549  -2.118 -1.362 "C3'"  LHO 18 
LHO "O3'"  "O3'"  O 0 1 N N N -9.654  1.320  18.108 2.306  -3.309 -1.586 "O3'"  LHO 19 
LHO "C4'"  "C4'"  C 0 1 N N R -7.783  2.314  17.578 2.131  -1.308 -0.176 "C4'"  LHO 20 
LHO "O4'"  "O4'"  O 0 1 N N N -6.838  1.499  17.655 1.001  -0.541 0.295  "O4'"  LHO 21 
LHO "C5'"  "C5'"  C 0 1 N N N -7.316  3.583  17.681 3.250  -0.380 -0.654 "C5'"  LHO 22 
LHO "O5'"  "O5'"  O 0 1 N N N -6.885  3.836  18.931 3.846  0.268  0.472  "O5'"  LHO 23 
LHO H1     H1     H 0 1 N N N -5.421  2.079  19.434 -0.415 0.205  -1.803 H1     LHO 24 
LHO H2     H2     H 0 1 N N N -3.293  1.389  20.033 -2.314 1.528  -2.468 H2     LHO 25 
LHO H6     H6     H 0 1 N N N -1.983  -0.176 20.478 -4.710 2.256  -2.002 H6     LHO 26 
LHO H8     H8     H 0 1 N N N -3.289  -3.917 20.502 -6.771 0.702  1.396  H8     LHO 27 
LHO H9     H9     H 0 1 N N N -5.401  -3.201 20.039 -4.809 -0.632 2.026  H9     LHO 28 
LHO "H1'"  "H1'"  H 0 1 N N N -7.647  -0.197 18.184 -0.286 -1.901 1.200  "H1'"  LHO 29 
LHO H110   H110   H 0 0 N N N -1.324  -2.463 21.999 -7.709 1.776  -1.362 H110   LHO 30 
LHO H210   H210   H 0 0 N N N -1.213  -3.480 20.523 -7.615 2.624  0.200  H210   LHO 31 
LHO H310   H310   H 0 0 N N N -0.634  -1.780 20.488 -6.757 3.273  -1.218 H310   LHO 32 
LHO "H12'" "H12'" H 0 0 N N N -7.583  1.859  20.404 0.095  -3.461 -0.437 "H12'" LHO 33 
LHO "H22'" "H22'" H 0 0 N N N -8.683  0.542  20.178 -0.600 -2.358 -1.665 "H22'" LHO 34 
LHO "H3'"  "H3'"  H 0 1 N N N -9.192  2.873  19.167 1.507  -1.510 -2.265 "H3'"  LHO 35 
LHO "H4'"  "H4'"  H 0 1 N N N -8.289  2.234  16.604 2.493  -1.976 0.605  "H4'"  LHO 36 
LHO "H15'" "H15'" H 0 0 N N N -6.479  3.714  16.980 4.005  -0.964 -1.180 "H15'" LHO 37 
LHO "H25'" "H25'" H 0 0 N N N -8.126  4.284  17.433 2.836  0.370  -1.328 "H25'" LHO 38 
LHO HOP2   HOP2   H 0 0 N N N -7.183  6.756  19.444 3.824  3.086  -0.029 HO1P   LHO 39 
LHO HOP3   HOP3   H 0 0 N N N -5.883  5.986  20.943 6.295  2.376  1.803  HO2P   LHO 40 
LHO "HO3'" "HO3'" H 0 0 N Y N -10.101 1.858  17.465 1.929  -3.894 -2.259 "HO3'" LHO 41 
LHO OP1    OP1    O 0 1 N N N -6.362  6.757  19.791 6.176  0.688  -0.402 O6     LHO 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LHO P      OP3    SING N N 1  
LHO C1     C2     DOUB N N 2  
LHO N1     C1     SING N N 3  
LHO N1     C5     SING N N 4  
LHO S1     C5     DOUB N N 5  
LHO C2     H2     SING N N 6  
LHO C2     C3     SING N N 7  
LHO C3     C6     SING Y N 8  
LHO C4     C3     DOUB Y N 9  
LHO C4     C9     SING Y N 10 
LHO C5     C4     SING N N 11 
LHO C6     H6     SING N N 12 
LHO C6     C7     DOUB Y N 13 
LHO C7     C10    SING N N 14 
LHO C8     C7     SING Y N 15 
LHO C8     H8     SING N N 16 
LHO C9     C8     DOUB Y N 17 
LHO "C1'"  N1     SING N N 18 
LHO "C1'"  "C2'"  SING N N 19 
LHO C10    H110   SING N N 20 
LHO OP2    P      SING N N 21 
LHO OP2    HOP2   SING N N 22 
LHO "C2'"  "H22'" SING N N 23 
LHO "C2'"  "H12'" SING N N 24 
LHO OP3    HOP3   SING N N 25 
LHO "C3'"  "C2'"  SING N N 26 
LHO "C3'"  "H3'"  SING N N 27 
LHO "O3'"  "C3'"  SING N N 28 
LHO "O3'"  "HO3'" SING N N 29 
LHO "C4'"  "C3'"  SING N N 30 
LHO "C4'"  "O4'"  SING N N 31 
LHO "C4'"  "C5'"  SING N N 32 
LHO "O4'"  "C1'"  SING N N 33 
LHO "C5'"  "O5'"  SING N N 34 
LHO "O5'"  P      SING N N 35 
LHO H1     C1     SING N N 36 
LHO H9     C9     SING N N 37 
LHO "H1'"  "C1'"  SING N N 38 
LHO H210   C10    SING N N 39 
LHO H310   C10    SING N N 40 
LHO "H4'"  "C4'"  SING N N 41 
LHO "H15'" "C5'"  SING N N 42 
LHO "H25'" "C5'"  SING N N 43 
LHO P      OP1    DOUB N N 44 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LHO SMILES           ACDLabs              12.01 "O=P(O)(O)OCC3OC(N2C(=S)c1c(cc(cc1)C)C=C2)CC3O"                                                                                                          
LHO InChI            InChI                1.03  "InChI=1S/C15H18NO6PS/c1-9-2-3-11-10(6-9)4-5-16(15(11)24)14-7-12(17)13(22-14)8-21-23(18,19)20/h2-6,12-14,17H,7-8H2,1H3,(H2,18,19,20)/t12-,13+,14+/m0/s1" 
LHO InChIKey         InChI                1.03  VWYVWCCRRCEFQM-BFHYXJOUSA-N                                                                                                                              
LHO SMILES_CANONICAL CACTVS               3.370 "Cc1ccc2C(=S)N(C=Cc2c1)[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3"                                                                                           
LHO SMILES           CACTVS               3.370 "Cc1ccc2C(=S)N(C=Cc2c1)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3"                                                                                               
LHO SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "Cc1ccc2c(c1)C=CN(C2=S)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O"                                                                                             
LHO SMILES           "OpenEye OEToolkits" 1.7.2 "Cc1ccc2c(c1)C=CN(C2=S)C3CC(C(O3)COP(=O)(O)O)O"                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LHO "SYSTEMATIC NAME" ACDLabs              12.01 "2-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-6-methylisoquinoline-1(2H)-thione"                    
LHO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "[(2R,3S,5R)-5-(6-methyl-1-sulfanylidene-isoquinolin-2-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LHO "Create component" 2011-08-19 RCSB 
# 
