data_A1ICO
# 
_chem_comp.id                                    A1ICO 
_chem_comp.name                                  "7-methyl-3-[[4-oxidanyl-1-[(3~{R},4~{R})-3-phenyl-1-[(5-pyridin-4-yl-1,3-thiazol-2-yl)methyl]piperidin-4-yl]carbonyl-piperidin-4-yl]methyl]pyrrolo[2,3-d]pyrimidin-4-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H37 N7 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-06-03 
_chem_comp.pdbx_modified_date                    2024-11-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        623.768 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1ICO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9FIV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1ICO C10 C1  C 0 1 Y N N N N N -67.562 3.858  92.308  0.417  4.873  -0.204 C10 A1ICO 1  
A1ICO C15 C2  C 0 1 N N N N N N -68.244 6.221  88.238  -3.777 1.917  2.348  C15 A1ICO 2  
A1ICO C21 C3  C 0 1 Y N N N N N -76.195 7.389  87.965  -7.041 -3.781 -2.367 C21 A1ICO 3  
A1ICO C28 C4  C 0 1 N N N N N N -70.627 5.611  87.546  -5.700 0.776  1.234  C28 A1ICO 4  
A1ICO C01 C5  C 0 1 Y N N N N N -67.557 11.270 100.954 9.146  -1.067 0.619  C01 A1ICO 5  
A1ICO C02 C6  C 0 1 Y N N N N N -67.044 12.272 101.788 10.296 -1.535 1.218  C02 A1ICO 6  
A1ICO C04 C7  C 0 1 Y N N N N N -64.774 11.381 101.478 9.581  -3.725 1.058  C04 A1ICO 7  
A1ICO C05 C8  C 0 1 Y N N N N N -65.299 10.392 100.662 8.397  -3.344 0.463  C05 A1ICO 8  
A1ICO C07 C9  C 0 1 Y N N N N N -70.254 3.624  91.543  -1.421 4.336  -2.199 C07 A1ICO 9  
A1ICO C08 C10 C 0 1 Y N N N N N -69.334 2.693  91.113  -1.342 5.605  -1.656 C08 A1ICO 10 
A1ICO C09 C11 C 0 1 Y N N N N N -68.004 2.824  91.497  -0.427 5.872  -0.654 C09 A1ICO 11 
A1ICO C11 C12 C 0 1 Y N N N N N -68.483 4.794  92.741  0.345  3.608  -0.756 C11 A1ICO 12 
A1ICO C12 C13 C 0 1 N N N N N N -68.420 8.327  94.898  2.239  -0.201 -0.470 C12 A1ICO 13 
A1ICO C14 C14 C 0 1 N N N N N N -67.438 7.275  89.012  -2.355 1.728  2.886  C14 A1ICO 14 
A1ICO C18 C15 C 0 1 N N N N N N -72.972 5.899  88.204  -5.975 -0.732 -0.663 C18 A1ICO 15 
A1ICO C19 C16 C 0 1 N N N N N N -75.765 9.071  86.025  -8.130 -5.131 -0.547 C19 A1ICO 16 
A1ICO C23 C17 C 0 1 Y N N N N N -74.143 6.561  88.003  -6.450 -1.958 -1.186 C23 A1ICO 17 
A1ICO C29 C18 C 0 1 N N N N N N -69.752 6.634  88.221  -4.267 0.601  1.741  C29 A1ICO 18 
A1ICO C30 C19 C 0 1 N N N N N N -70.340 6.810  89.633  -3.359 0.206  0.574  C30 A1ICO 19 
A1ICO C31 C20 C 0 1 N N N N N N -69.502 7.841  90.368  -1.932 -0.003 1.091  C31 A1ICO 20 
A1ICO C34 C21 C 0 1 N N N N N N -67.360 7.084  91.459  -0.358 1.833  1.473  C34 A1ICO 21 
A1ICO C36 C22 C 0 1 N N R N N N -68.029 5.839  93.545  1.269  2.521  -0.270 C36 A1ICO 22 
A1ICO C37 C23 C 0 1 N N N N N N -68.860 5.953  94.851  2.125  2.019  -1.435 C37 A1ICO 23 
A1ICO C39 C24 C 0 1 N N N N N N -69.104 7.203  96.923  3.944  0.534  -2.023 C39 A1ICO 24 
A1ICO C40 C25 C 0 1 Y N N N N N -66.588 8.164  99.441  5.901  -2.318 -0.837 C40 A1ICO 25 
A1ICO C42 C26 C 0 1 Y N N N N N -68.275 7.930  97.959  4.992  -0.379 -1.441 C42 A1ICO 26 
A1ICO N20 N1  N 0 1 Y N N N N N -75.471 8.011  87.023  -7.435 -3.950 -1.066 N20 A1ICO 27 
A1ICO O17 O1  O 0 1 N N N N N N -72.810 5.029  89.056  -5.400 0.073  -1.375 O17 A1ICO 28 
A1ICO C22 C27 C 0 1 Y N N N N N -75.372 6.507  88.556  -6.432 -2.589 -2.502 C22 A1ICO 29 
A1ICO C24 C28 C 0 1 Y N N N N N -74.241 7.499  87.047  -7.086 -2.861 -0.324 C24 A1ICO 30 
A1ICO N25 N2  N 0 1 N N N N N N -73.207 7.826  86.294  -7.238 -2.532 0.969  N25 A1ICO 31 
A1ICO C26 C29 C 0 1 N N N N N N -72.067 7.180  86.484  -6.799 -1.397 1.435  C26 A1ICO 32 
A1ICO N27 N3  N 0 1 N N N N N N -71.942 6.209  87.425  -6.170 -0.483 0.652  N27 A1ICO 33 
A1ICO O16 O2  O 0 1 N N N N N N -69.790 7.866  87.525  -4.236 -0.424 2.736  O16 A1ICO 34 
A1ICO N32 N4  N 0 1 N N N N N N -68.052 7.427  90.349  -1.506 1.209  1.805  N32 A1ICO 35 
A1ICO O33 O3  O 0 1 N N N N N N -66.200 6.720  91.470  0.031  2.776  2.129  O33 A1ICO 36 
A1ICO C35 C30 C 0 1 N N R N N N -68.104 7.162  92.786  0.442  1.359  0.288  C35 A1ICO 37 
A1ICO C06 C31 C 0 1 Y N N N N N -69.828 4.673  92.351  -0.574 3.339  -1.753 C06 A1ICO 38 
A1ICO C13 C32 C 0 1 N N N N N N -67.552 8.281  93.616  1.386  0.235  0.724  C13 A1ICO 39 
A1ICO N38 N5  N 0 1 N N N N N N -68.333 7.061  95.677  3.011  0.945  -0.966 N38 A1ICO 40 
A1ICO S43 S1  S 0 1 Y N N N N N -68.544 9.461  98.508  6.481  0.141  -0.780 S43 A1ICO 41 
A1ICO N41 N6  N 0 1 Y N N N N N -67.201 7.389  98.535  4.896  -1.665 -1.375 N41 A1ICO 42 
A1ICO C44 C33 C 0 1 Y N N N N N -67.164 9.355  99.584  6.915  -1.529 -0.419 C44 A1ICO 43 
A1ICO C45 C34 C 0 1 Y N N N N N -66.693 10.314 100.401 8.163  -1.984 0.226  C45 A1ICO 44 
A1ICO N03 N7  N 0 1 Y N N N N N -65.658 12.324 102.049 10.479 -2.827 1.417  N03 A1ICO 45 
A1ICO H10 H1  H 0 1 N N N N N N -66.523 3.931  92.595  1.134  5.083  0.575  H10 A1ICO 46 
A1ICO H18 H2  H 0 1 N N N N N N -68.136 5.243  88.729  -4.438 2.210  3.164  H18 A1ICO 47 
A1ICO H19 H3  H 0 1 N N N N N N -67.869 6.157  87.206  -3.776 2.694  1.584  H19 A1ICO 48 
A1ICO H21 H4  H 0 1 N N N N N N -77.234 7.563  88.202  -7.192 -4.497 -3.161 H21 A1ICO 49 
A1ICO H28 H5  H 0 1 N N N N N N -70.680 4.696  88.154  -6.348 1.057  2.065  H28 A1ICO 50 
A1ICO H29 H6  H 0 1 N N N N N N -70.228 5.367  86.551  -5.724 1.558  0.475  H29 A1ICO 51 
A1ICO H01 H7  H 0 1 N N N N N N -68.615 11.234 100.738 9.004  -0.008 0.458  H01 A1ICO 52 
A1ICO H02 H8  H 0 1 N N N N N N -67.707 13.002 102.229 11.058 -0.835 1.528  H02 A1ICO 53 
A1ICO H04 H9  H 0 1 N N N N N N -63.713 11.430 101.673 9.772  -4.772 1.241  H04 A1ICO 54 
A1ICO H05 H10 H 0 1 N N N N N N -64.635 9.666  100.216 7.667  -4.084 0.172  H05 A1ICO 55 
A1ICO H07 H11 H 0 1 N N N N N N -71.292 3.540  91.257  -2.139 4.126  -2.978 H07 A1ICO 56 
A1ICO H08 H12 H 0 1 N N N N N N -69.642 1.871  90.485  -2.001 6.385  -2.007 H08 A1ICO 57 
A1ICO H09 H13 H 0 1 N N N N N N -67.289 2.093  91.151  -0.372 6.860  -0.223 H09 A1ICO 58 
A1ICO H12 H14 H 0 1 N N N N N N -68.075 9.158  95.531  2.922  -0.992 -0.159 H12 A1ICO 59 
A1ICO H13 H15 H 0 1 N N N N N N -69.468 8.496  94.611  1.590  -0.573 -1.263 H13 A1ICO 60 
A1ICO H16 H16 H 0 1 N N N N N N -66.394 6.945  89.116  -1.964 2.685  3.230  H16 A1ICO 61 
A1ICO H17 H17 H 0 1 N N N N N N -67.467 8.235  88.476  -2.368 1.018  3.713  H17 A1ICO 62 
A1ICO H2C H18 H 0 1 N N N N N N -76.812 9.391  86.127  -9.207 -4.986 -0.635 H2C A1ICO 63 
A1ICO H2A H19 H 0 1 N N N N N N -75.101 9.931  86.197  -7.834 -6.009 -1.121 H2A A1ICO 64 
A1ICO H2B H20 H 0 1 N N N N N N -75.600 8.676  85.012  -7.868 -5.276 0.501  H2B A1ICO 65 
A1ICO H30 H21 H 0 1 N N N N N N -71.381 7.158  89.563  -3.722 -0.719 0.127  H30 A1ICO 66 
A1ICO H31 H22 H 0 1 N N N N N N -70.309 5.852  90.172  -3.362 0.998  -0.174 H31 A1ICO 67 
A1ICO H33 H23 H 0 1 N N N N N N -69.609 8.818  89.874  -1.911 -0.854 1.772  H33 A1ICO 68 
A1ICO H32 H24 H 0 1 N N N N N N -69.847 7.917  91.410  -1.263 -0.190 0.252  H32 A1ICO 69 
A1ICO H36 H25 H 0 1 N N N N N N -66.980 5.666  93.828  1.916  2.916  0.513  H36 A1ICO 70 
A1ICO H38 H26 H 0 1 N N N N N N -69.912 6.152  94.600  1.477  1.637  -2.223 H38 A1ICO 71 
A1ICO H37 H27 H 0 1 N N N N N N -68.789 5.011  95.414  2.726  2.841  -1.825 H37 A1ICO 72 
A1ICO H39 H28 H 0 1 N N N N N N -70.021 7.776  96.722  4.425  1.416  -2.447 H39 A1ICO 73 
A1ICO H4A H29 H 0 1 N N N N N N -69.371 6.206  97.303  3.398  0.007  -2.806 H4A A1ICO 74 
A1ICO H40 H30 H 0 1 N N N N N N -65.716 7.854  99.998  5.913  -3.393 -0.733 H40 A1ICO 75 
A1ICO H22 H31 H 0 1 N N N N N N -75.655 5.846  89.362  -6.011 -2.180 -3.409 H22 A1ICO 76 
A1ICO H26 H32 H 0 1 N N N N N N -71.213 7.432  85.873  -6.943 -1.174 2.482  H26 A1ICO 77 
A1ICO H41 H33 H 0 1 N N N N N N -69.233 8.497  87.966  -4.536 -1.288 2.421  H41 A1ICO 78 
A1ICO H35 H34 H 0 1 N N N N N N -69.162 7.375  92.574  -0.233 0.990  -0.484 H35 A1ICO 79 
A1ICO H06 H35 H 0 1 N N N N N N -70.545 5.409  92.685  -0.636 2.348  -2.177 H06 A1ICO 80 
A1ICO H14 H36 H 0 1 N N N N N N -66.501 8.084  93.873  0.801  -0.613 1.082  H14 A1ICO 81 
A1ICO H15 H37 H 0 1 N N N N N N -67.624 9.234  93.071  2.035  0.593  1.523  H15 A1ICO 82 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1ICO C19 N20 SING N N 1  
A1ICO N25 C26 DOUB N N 2  
A1ICO N25 C24 SING N N 3  
A1ICO C26 N27 SING N N 4  
A1ICO N20 C24 SING Y N 5  
A1ICO N20 C21 SING Y N 6  
A1ICO C24 C23 DOUB Y N 7  
A1ICO N27 C28 SING N N 8  
A1ICO N27 C18 SING N N 9  
A1ICO O16 C29 SING N N 10 
A1ICO C28 C29 SING N N 11 
A1ICO C21 C22 DOUB Y N 12 
A1ICO C23 C18 SING N N 13 
A1ICO C23 C22 SING Y N 14 
A1ICO C18 O17 DOUB N N 15 
A1ICO C29 C15 SING N N 16 
A1ICO C29 C30 SING N N 17 
A1ICO C15 C14 SING N N 18 
A1ICO C14 N32 SING N N 19 
A1ICO C30 C31 SING N N 20 
A1ICO N32 C31 SING N N 21 
A1ICO N32 C34 SING N N 22 
A1ICO C08 C09 DOUB Y N 23 
A1ICO C08 C07 SING Y N 24 
A1ICO C34 O33 DOUB N N 25 
A1ICO C34 C35 SING N N 26 
A1ICO C09 C10 SING Y N 27 
A1ICO C07 C06 DOUB Y N 28 
A1ICO C10 C11 DOUB Y N 29 
A1ICO C06 C11 SING Y N 30 
A1ICO C11 C36 SING N N 31 
A1ICO C35 C36 SING N N 32 
A1ICO C35 C13 SING N N 33 
A1ICO C36 C37 SING N N 34 
A1ICO C13 C12 SING N N 35 
A1ICO C37 N38 SING N N 36 
A1ICO C12 N38 SING N N 37 
A1ICO N38 C39 SING N N 38 
A1ICO C39 C42 SING N N 39 
A1ICO C42 S43 SING Y N 40 
A1ICO C42 N41 DOUB Y N 41 
A1ICO S43 C44 SING Y N 42 
A1ICO N41 C40 SING Y N 43 
A1ICO C40 C44 DOUB Y N 44 
A1ICO C44 C45 SING N N 45 
A1ICO C45 C05 DOUB Y N 46 
A1ICO C45 C01 SING Y N 47 
A1ICO C05 C04 SING Y N 48 
A1ICO C01 C02 DOUB Y N 49 
A1ICO C04 N03 DOUB Y N 50 
A1ICO C02 N03 SING Y N 51 
A1ICO C10 H10 SING N N 52 
A1ICO C15 H18 SING N N 53 
A1ICO C15 H19 SING N N 54 
A1ICO C21 H21 SING N N 55 
A1ICO C28 H28 SING N N 56 
A1ICO C28 H29 SING N N 57 
A1ICO C01 H01 SING N N 58 
A1ICO C02 H02 SING N N 59 
A1ICO C04 H04 SING N N 60 
A1ICO C05 H05 SING N N 61 
A1ICO C07 H07 SING N N 62 
A1ICO C08 H08 SING N N 63 
A1ICO C09 H09 SING N N 64 
A1ICO C12 H12 SING N N 65 
A1ICO C12 H13 SING N N 66 
A1ICO C14 H16 SING N N 67 
A1ICO C14 H17 SING N N 68 
A1ICO C19 H2C SING N N 69 
A1ICO C19 H2A SING N N 70 
A1ICO C19 H2B SING N N 71 
A1ICO C30 H30 SING N N 72 
A1ICO C30 H31 SING N N 73 
A1ICO C31 H33 SING N N 74 
A1ICO C31 H32 SING N N 75 
A1ICO C36 H36 SING N N 76 
A1ICO C37 H38 SING N N 77 
A1ICO C37 H37 SING N N 78 
A1ICO C39 H39 SING N N 79 
A1ICO C39 H4A SING N N 80 
A1ICO C40 H40 SING N N 81 
A1ICO C22 H22 SING N N 82 
A1ICO C26 H26 SING N N 83 
A1ICO O16 H41 SING N N 84 
A1ICO C35 H35 SING N N 85 
A1ICO C06 H06 SING N N 86 
A1ICO C13 H14 SING N N 87 
A1ICO C13 H15 SING N N 88 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1ICO InChI            InChI                1.06  "InChI=1S/C34H37N7O3S/c1-38-15-9-27-31(38)37-23-41(33(27)43)22-34(44)11-17-40(18-12-34)32(42)26-10-16-39(20-28(26)24-5-3-2-4-6-24)21-30-36-19-29(45-30)25-7-13-35-14-8-25/h2-9,13-15,19,23,26,28,44H,10-12,16-18,20-22H2,1H3/t26-,28+/m1/s1" 
A1ICO InChIKey         InChI                1.06  RRXAAUXUWASHNO-IAPPQJPRSA-N                                                                                                                                                                                                                  
A1ICO SMILES_CANONICAL CACTVS               3.385 "Cn1ccc2C(=O)N(CC3(O)CCN(CC3)C(=O)[C@@H]4CCN(C[C@H]4c5ccccc5)Cc6sc(cn6)c7ccncc7)C=Nc12"                                                                                                                                                      
A1ICO SMILES           CACTVS               3.385 "Cn1ccc2C(=O)N(CC3(O)CCN(CC3)C(=O)[CH]4CCN(C[CH]4c5ccccc5)Cc6sc(cn6)c7ccncc7)C=Nc12"                                                                                                                                                         
A1ICO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1ccc2c1N=CN(C2=O)CC3(CCN(CC3)C(=O)[C@@H]4CCN(C[C@H]4c5ccccc5)Cc6ncc(s6)c7ccncc7)O"                                                                                                                                                        
A1ICO SMILES           "OpenEye OEToolkits" 2.0.7 "Cn1ccc2c1N=CN(C2=O)CC3(CCN(CC3)C(=O)C4CCN(CC4c5ccccc5)Cc6ncc(s6)c7ccncc7)O"                                                                                                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           A1ICO 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "7-methyl-3-[[4-oxidanyl-1-[(3~{R},4~{R})-3-phenyl-1-[(5-pyridin-4-yl-1,3-thiazol-2-yl)methyl]piperidin-4-yl]carbonyl-piperidin-4-yl]methyl]pyrrolo[2,3-d]pyrimidin-4-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1ICO "Create component"   2024-06-03 PDBE 
A1ICO "Other modification" 2024-06-28 PDBE 
A1ICO "Initial release"    2024-11-06 RCSB 
# 
