data_8EO
# 
_chem_comp.id                                    8EO 
_chem_comp.name                                  "2-[(5S)-3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2,5-dihydro-1,3-thiazol-3-ium-5-yl]ethyl phosphono hydrogen phosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H21 N4 O7 P2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2017-06-20 
_chem_comp.pdbx_modified_date                    2018-04-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        427.330 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8EO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5XSM 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8EO "C4'" C1  C 0 1 Y N N -12.834 -32.901 -25.936 5.457  -0.639 -0.779 "C4'" 8EO 1  
8EO "C5'" C2  C 0 1 Y N N -12.973 -33.038 -27.353 5.012  -0.318 0.505  "C5'" 8EO 2  
8EO "C6'" C3  C 0 1 Y N N -11.790 -33.138 -28.054 4.839  -1.343 1.414  "C6'" 8EO 3  
8EO "N1'" N1  N 0 1 Y N N -10.578 -33.111 -27.400 5.099  -2.588 1.042  "N1'" 8EO 4  
8EO "N3'" N2  N 0 1 Y N N -11.626 -32.911 -25.314 5.697  -1.913 -1.077 "N3'" 8EO 5  
8EO "C2'" C4  C 0 1 Y N N -10.518 -32.986 -26.058 5.518  -2.859 -0.178 "C2'" 8EO 6  
8EO CM4   C5  C 0 1 N N N -13.944 -35.645 -29.477 2.678  1.691  2.673  CM4   8EO 7  
8EO CM2   C6  C 0 1 N N N -9.250  -32.944 -25.440 5.800  -4.290 -0.555 CM2   8EO 8  
8EO C7    C7  C 0 1 N N N -15.666 -38.686 -27.237 -1.222 1.470  0.147  C7    8EO 9  
8EO C6    C8  C 0 1 N N N -16.021 -37.725 -28.363 0.148  0.998  0.638  C6    8EO 10 
8EO C2    C9  C 0 1 N N N -16.034 -34.111 -26.704 3.164  1.585  -1.065 C2    8EO 11 
8EO "C7'" C10 C 0 1 N N N -14.236 -33.015 -28.101 4.729  1.112  0.889  "C7'" 8EO 12 
8EO C4    C11 C 0 1 N N N -14.956 -35.389 -28.386 2.476  1.765  1.182  C4    8EO 13 
8EO C5    C12 C 0 1 N N S -15.629 -36.422 -27.737 1.138  2.163  0.587  C5    8EO 14 
8EO "N4'" N3  N 0 1 N N N -13.900 -32.782 -25.157 5.641  0.353  -1.729 "N4'" 8EO 15 
8EO N3    N4  N 1 1 N N N -15.089 -34.172 -27.811 3.410  1.501  0.384  N3    8EO 16 
8EO OB1   O1  O 0 1 N N N -19.125 -41.368 -27.805 -6.778 -0.199 0.807  OB1   8EO 17 
8EO OA2   O2  O 0 1 N N N -15.183 -40.716 -25.319 -3.763 0.839  -1.828 OA2   8EO 18 
8EO OB3   O3  O 0 1 N N N -18.924 -42.845 -25.886 -6.160 -2.640 0.978  OB3   8EO 19 
8EO OB2   O4  O 0 1 N N N -20.064 -40.515 -25.737 -6.590 -1.496 -1.350 OB2   8EO 20 
8EO OA1   O5  O 0 1 N N N -16.014 -42.416 -27.031 -4.323 1.622  0.505  OA1   8EO 21 
8EO O8    O6  O 0 1 N N N -15.905 -40.019 -27.658 -2.147 0.382  0.194  O8    8EO 22 
8EO OA3   O7  O 0 1 N N N -17.600 -40.717 -25.966 -4.461 -0.858 0.055  OA3   8EO 23 
8EO PB    P1  P 0 1 N N N -18.970 -41.416 -26.288 -6.014 -1.275 0.137  PB    8EO 24 
8EO PA    P2  P 0 1 N N N -16.099 -41.028 -26.462 -3.688 0.520  -0.252 PA    8EO 25 
8EO S1    S1  S 0 1 N N N -16.822 -35.714 -26.614 1.604  2.557  -1.148 S1    8EO 26 
8EO H1    H1  H 0 1 N N N -11.814 -33.239 -29.129 4.497  -1.133 2.417  H1    8EO 27 
8EO H2    H2  H 0 1 N N N -14.007 -36.695 -29.798 3.449  2.402  2.971  H2    8EO 28 
8EO H3    H3  H 0 1 N N N -14.154 -34.987 -30.333 1.744  1.935  3.179  H3    8EO 29 
8EO H4    H4  H 0 1 N N N -12.933 -35.439 -29.095 2.987  0.683  2.948  H4    8EO 30 
8EO H5    H5  H 0 1 N N N -8.465  -33.026 -26.206 4.894  -4.746 -0.956 H5    8EO 31 
8EO H6    H6  H 0 1 N N N -9.137  -31.993 -24.900 6.586  -4.319 -1.310 H6    8EO 32 
8EO H7    H7  H 0 1 N N N -9.159  -33.781 -24.732 6.124  -4.841 0.328  H7    8EO 33 
8EO H8    H8  H 0 1 N N N -14.604 -38.569 -26.977 -1.578 2.278  0.787  H8    8EO 34 
8EO H9    H9  H 0 1 N N N -16.286 -38.463 -26.356 -1.136 1.830  -0.878 H9    8EO 35 
8EO H10   H10 H 0 1 N N N -17.095 -37.756 -28.601 0.062  0.638  1.663  H10   8EO 36 
8EO H11   H11 H 0 1 N N N -15.438 -37.931 -29.273 0.504  0.190  -0.002 H11   8EO 37 
8EO H12   H12 H 0 1 N N N -15.504 -33.895 -25.764 3.976  2.114  -1.565 H12   8EO 38 
8EO H13   H13 H 0 1 N N N -16.785 -33.329 -26.889 3.026  0.594  -1.496 H13   8EO 39 
8EO H14   H14 H 0 1 N N N -14.007 -33.008 -29.177 4.744  1.206  1.975  H14   8EO 40 
8EO H15   H15 H 0 1 N N N -14.784 -32.099 -27.837 5.490  1.762  0.458  H15   8EO 41 
8EO H17   H17 H 0 1 N N N -14.877 -36.757 -27.007 0.732  3.040  1.092  H17   8EO 42 
8EO H18   H18 H 0 1 N N N -13.610 -32.718 -24.202 5.946  0.121  -2.619 H18   8EO 43 
8EO H19   H19 H 0 1 N N N -14.406 -31.957 -25.408 5.464  1.280  -1.503 H19   8EO 44 
8EO H21   H21 H 0 1 N N N -14.659 -41.481 -25.115 -3.364 0.157  -2.387 H21   8EO 45 
8EO H22   H22 H 0 1 N N N -19.001 -43.394 -26.657 -7.071 -2.951 1.069  H22   8EO 46 
8EO H23   H23 H 0 1 N N N -20.566 -40.150 -26.456 -6.135 -2.189 -1.848 H23   8EO 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8EO CM4   C4    SING N N 1  
8EO C4    N3    DOUB N N 2  
8EO C4    C5    SING N N 3  
8EO C6    C5    SING N N 4  
8EO C6    C7    SING N N 5  
8EO "C7'" N3    SING N N 6  
8EO "C7'" "C5'" SING N N 7  
8EO "C6'" "N1'" DOUB Y N 8  
8EO "C6'" "C5'" SING Y N 9  
8EO N3    C2    SING N N 10 
8EO OB1   PB    DOUB N N 11 
8EO C5    S1    SING N N 12 
8EO O8    C7    SING N N 13 
8EO O8    PA    SING N N 14 
8EO "N1'" "C2'" SING Y N 15 
8EO "C5'" "C4'" DOUB Y N 16 
8EO OA1   PA    DOUB N N 17 
8EO C2    S1    SING N N 18 
8EO PA    OA3   SING N N 19 
8EO PA    OA2   SING N N 20 
8EO PB    OA3   SING N N 21 
8EO PB    OB3   SING N N 22 
8EO PB    OB2   SING N N 23 
8EO "C2'" CM2   SING N N 24 
8EO "C2'" "N3'" DOUB Y N 25 
8EO "C4'" "N3'" SING Y N 26 
8EO "C4'" "N4'" SING N N 27 
8EO "C6'" H1    SING N N 28 
8EO CM4   H2    SING N N 29 
8EO CM4   H3    SING N N 30 
8EO CM4   H4    SING N N 31 
8EO CM2   H5    SING N N 32 
8EO CM2   H6    SING N N 33 
8EO CM2   H7    SING N N 34 
8EO C7    H8    SING N N 35 
8EO C7    H9    SING N N 36 
8EO C6    H10   SING N N 37 
8EO C6    H11   SING N N 38 
8EO C2    H12   SING N N 39 
8EO C2    H13   SING N N 40 
8EO "C7'" H14   SING N N 41 
8EO "C7'" H15   SING N N 42 
8EO C5    H17   SING N N 43 
8EO "N4'" H18   SING N N 44 
8EO "N4'" H19   SING N N 45 
8EO OA2   H21   SING N N 46 
8EO OB3   H22   SING N N 47 
8EO OB2   H23   SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8EO InChI            InChI                1.03  "InChI=1S/C12H20N4O7P2S/c1-8-11(3-4-22-25(20,21)23-24(17,18)19)26-7-16(8)6-10-5-14-9(2)15-12(10)13/h5,11H,3-4,6-7H2,1-2H3,(H4-,13,14,15,17,18,19,20,21)/p+1/t11-/m0/s1" 
8EO InChIKey         InChI                1.03  FAOXQWUECSMMCY-NSHDSACASA-O                                                                                                                                             
8EO SMILES_CANONICAL CACTVS               3.385 "Cc1ncc(C[N+]2=C(C)[C@H](CCO[P](O)(=O)O[P](O)(O)=O)SC2)c(N)n1"                                                                                                          
8EO SMILES           CACTVS               3.385 "Cc1ncc(C[N+]2=C(C)[CH](CCO[P](O)(=O)O[P](O)(O)=O)SC2)c(N)n1"                                                                                                           
8EO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1ncc(c(n1)N)C[N+]2=C([C@@H](SC2)CCOP(=O)(O)OP(=O)(O)O)C"                                                                                                             
8EO SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1ncc(c(n1)N)C[N+]2=C(C(SC2)CCOP(=O)(O)OP(=O)(O)O)C"                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
8EO "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-[(5~{S})-3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2,5-dihydro-1,3-thiazol-3-ium-5-yl]ethyl phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8EO "Create component" 2017-06-20 PDBJ 
8EO "Initial release"  2018-04-25 RCSB 
# 
