data_YDN
# 
_chem_comp.id                                    YDN 
_chem_comp.name                                  "1-[(3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl]-3-[4-(trifluoromethoxy)phenyl]propan-1-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H22 F3 N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-13 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        473.448 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YDN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G5H 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YDN C02 C1  C 0 1 N N N N N N -14.411 10.742 49.613 -1.151 3.625  0.233  C02 YDN 1  
YDN C04 C2  C 0 1 N N R N N N -12.013 10.925 49.885 -1.998 1.415  0.139  C04 YDN 2  
YDN C05 C3  C 0 1 N N R N N N -13.330 11.247 50.601 -2.361 2.901  -0.264 C05 YDN 3  
YDN C06 C4  C 0 1 N N N N N N -13.049 12.623 51.381 -3.774 2.980  0.216  C06 YDN 4  
YDN C11 C5  C 0 1 N N N N N N -10.949 13.012 52.796 -5.616 1.242  0.133  C11 YDN 5  
YDN C15 C6  C 0 1 Y N N N N N -8.121  11.163 54.212 -5.608 -2.286 -1.126 C15 YDN 6  
YDN C16 C7  C 0 1 Y N N N N N -8.636  13.763 53.440 -7.113 -0.681 0.596  C16 YDN 7  
YDN C17 C8  C 0 1 Y N N N N N -7.404  13.465 54.033 -7.472 -2.019 0.406  C17 YDN 8  
YDN C18 C9  C 0 1 Y N N N N N -7.131  12.161 54.394 -6.710 -2.822 -0.463 C18 YDN 9  
YDN C22 C10 C 0 1 N N N N N N -14.317 8.678  47.994 1.287  2.938  0.179  C22 YDN 10 
YDN C23 C11 C 0 1 N N N N N N -13.427 7.749  47.161 2.314  1.870  -0.095 C23 YDN 11 
YDN C25 C12 C 0 1 N N N N N N -14.155 6.791  46.248 3.713  2.425  0.181  C25 YDN 12 
YDN C26 C13 C 0 1 Y N N N N N -13.146 5.979  45.510 4.740  1.357  -0.093 C26 YDN 13 
YDN C27 C14 C 0 1 Y N N N N N -12.480 6.458  44.378 5.289  1.235  -1.356 C27 YDN 14 
YDN C28 C15 C 0 1 Y N N N N N -11.567 5.598  43.787 6.231  0.257  -1.610 C28 YDN 15 
YDN N01 N1  N 0 1 N N N N N N -13.702 9.711  48.683 -0.023 2.674  0.004  N01 YDN 16 
YDN C03 C16 C 0 1 N N N N N N -12.199 9.935  48.675 -0.607 1.375  -0.457 C03 YDN 17 
YDN N07 N2  N 0 1 N N N N N N -11.565 12.363 51.749 -4.330 1.615  -0.025 N07 YDN 18 
YDN C08 C17 C 0 1 N N N N N N -10.815 11.350 50.839 -3.205 0.736  -0.474 C08 YDN 19 
YDN C12 C18 C 0 1 Y N N N N N -9.592  12.763 53.300 -6.005 -0.169 -0.067 C12 YDN 20 
YDN O13 O1  O 0 1 N N N N N N -11.710 13.742 53.391 -6.455 2.066  0.441  O13 YDN 21 
YDN C14 C19 C 0 1 Y N N N N N -9.357  11.481 53.712 -5.260 -0.983 -0.933 C14 YDN 22 
YDN N19 N3  N 0 1 Y N N N N N -5.879  12.104 54.941 -7.295 -4.063 -0.444 N19 YDN 23 
YDN N20 N4  N 0 1 Y N N N N N -5.388  13.371 54.870 -8.389 -3.980 0.429  N20 YDN 24 
YDN N21 N5  N 0 1 Y N N N N N -6.303  14.198 54.293 -8.468 -2.788 0.906  N21 YDN 25 
YDN O24 O2  O 0 1 N N N N N N -15.527 8.583  48.114 1.639  4.035  0.558  O24 YDN 26 
YDN C29 C20 C 0 1 Y N N N N N -11.349 4.302  44.277 6.626  -0.604 -0.596 C29 YDN 27 
YDN C30 C21 C 0 1 Y N N N N N -12.035 3.850  45.347 6.074  -0.479 0.670  C30 YDN 28 
YDN C31 C22 C 0 1 Y N N N N N -12.907 4.694  45.976 5.137  0.504  0.920  C31 YDN 29 
YDN O32 O3  O 0 1 N N N N N N -10.424 3.443  43.782 7.552  -1.567 -0.844 O32 YDN 30 
YDN C33 C23 C 0 1 N N N N N N -10.752 2.631  42.781 7.911  -2.417 0.247  C33 YDN 31 
YDN F34 F1  F 0 1 N N N N N N -11.121 3.341  41.746 6.776  -3.095 0.703  F34 YDN 32 
YDN F35 F2  F 0 1 N N N N N N -9.744  1.885  42.434 8.869  -3.344 -0.179 F35 YDN 33 
YDN F36 F3  F 0 1 N N N N N N -11.725 1.873  43.219 8.441  -1.644 1.286  F36 YDN 34 
YDN H38 H1  H 0 1 N N N N N N -14.808 11.580 49.021 -0.997 4.542  -0.335 H38 YDN 35 
YDN H37 H2  H 0 1 N N N N N N -15.233 10.259 50.161 -1.252 3.849  1.295  H37 YDN 36 
YDN H09 H3  H 0 1 N N N N N N -11.993 11.839 49.274 -1.978 1.281  1.220  H09 YDN 37 
YDN H10 H4  H 0 1 N N N N N N -13.366 10.508 51.415 -2.373 2.953  -1.353 H10 YDN 38 
YDN H42 H5  H 0 1 N N N N N N -13.169 13.502 50.731 -3.802 3.220  1.279  H42 YDN 39 
YDN H41 H6  H 0 1 N N N N N N -13.686 12.735 52.271 -4.329 3.724  -0.357 H41 YDN 40 
YDN H46 H7  H 0 1 N N N N N N -7.898  10.138 54.471 -5.026 -2.907 -1.791 H46 YDN 41 
YDN H47 H8  H 0 1 N N N N N N -8.843  14.764 53.093 -7.689 -0.053 1.259  H47 YDN 42 
YDN H50 H9  H 0 1 N N N N N N -12.772 8.377  46.539 2.129  1.013  0.553  H50 YDN 43 
YDN H49 H10 H 0 1 N N N N N N -12.815 7.155  47.855 2.246  1.559  -1.137 H49 YDN 44 
YDN H51 H11 H 0 1 N N N N N N -14.800 6.129  46.844 3.898  3.282  -0.467 H51 YDN 45 
YDN H52 H12 H 0 1 N N N N N N -14.771 7.356  45.533 3.782  2.736  1.223  H52 YDN 46 
YDN H53 H13 H 0 1 N N N N N N -12.667 7.446  43.984 4.981  1.905  -2.145 H53 YDN 47 
YDN H54 H14 H 0 1 N N N N N N -11.009 5.935  42.926 6.660  0.162  -2.597 H54 YDN 48 
YDN H39 H15 H 0 1 N N N N N N -11.653 8.994  48.840 -0.041 0.532  -0.060 H39 YDN 49 
YDN H40 H16 H 0 1 N N N N N N -11.867 10.391 47.730 -0.653 1.334  -1.545 H40 YDN 50 
YDN H43 H17 H 0 1 N N N N N N -10.422 10.496 51.411 -3.132 0.725  -1.561 H43 YDN 51 
YDN H44 H18 H 0 1 N N N N N N -9.995  11.827 50.282 -3.322 -0.274 -0.082 H44 YDN 52 
YDN H45 H19 H 0 1 N N N N N N -10.132 10.732 53.645 -4.405 -0.574 -1.450 H45 YDN 53 
YDN H48 H20 H 0 1 N N N N N N -5.420  11.298 55.315 -7.007 -4.846 -0.939 H48 YDN 54 
YDN H55 H21 H 0 1 N N N N N N -11.898 2.839  45.701 6.380  -1.148 1.461  H55 YDN 55 
YDN H56 H22 H 0 1 N N N N N N -13.424 4.351  46.860 4.710  0.604  1.907  H56 YDN 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YDN N01 C02 SING N N 1  
YDN N01 C03 SING N N 2  
YDN C03 C04 SING N N 3  
YDN C02 C05 SING N N 4  
YDN C04 C05 SING N N 5  
YDN C05 C06 SING N N 6  
YDN C06 N07 SING N N 7  
YDN C04 C08 SING N N 8  
YDN N07 C08 SING N N 9  
YDN N07 C11 SING N N 10 
YDN C11 C12 SING N N 11 
YDN C11 O13 DOUB N N 12 
YDN C12 C14 DOUB Y N 13 
YDN C14 C15 SING Y N 14 
YDN C12 C16 SING Y N 15 
YDN C16 C17 DOUB Y N 16 
YDN C15 C18 DOUB Y N 17 
YDN C17 C18 SING Y N 18 
YDN C18 N19 SING Y N 19 
YDN N19 N20 SING Y N 20 
YDN C17 N21 SING Y N 21 
YDN N20 N21 DOUB Y N 22 
YDN N01 C22 SING N N 23 
YDN C22 C23 SING N N 24 
YDN C22 O24 DOUB N N 25 
YDN C23 C25 SING N N 26 
YDN C25 C26 SING N N 27 
YDN C26 C27 DOUB Y N 28 
YDN C27 C28 SING Y N 29 
YDN C28 C29 DOUB Y N 30 
YDN C29 C30 SING Y N 31 
YDN C26 C31 SING Y N 32 
YDN C30 C31 DOUB Y N 33 
YDN C29 O32 SING N N 34 
YDN O32 C33 SING N N 35 
YDN C33 F34 SING N N 36 
YDN C33 F35 SING N N 37 
YDN C33 F36 SING N N 38 
YDN C02 H38 SING N N 39 
YDN C02 H37 SING N N 40 
YDN C04 H09 SING N N 41 
YDN C05 H10 SING N N 42 
YDN C06 H42 SING N N 43 
YDN C06 H41 SING N N 44 
YDN C15 H46 SING N N 45 
YDN C16 H47 SING N N 46 
YDN C23 H50 SING N N 47 
YDN C23 H49 SING N N 48 
YDN C25 H51 SING N N 49 
YDN C25 H52 SING N N 50 
YDN C27 H53 SING N N 51 
YDN C28 H54 SING N N 52 
YDN C03 H39 SING N N 53 
YDN C03 H40 SING N N 54 
YDN C08 H43 SING N N 55 
YDN C08 H44 SING N N 56 
YDN C14 H45 SING N N 57 
YDN N19 H48 SING N N 58 
YDN C30 H55 SING N N 59 
YDN C31 H56 SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YDN SMILES           ACDLabs              12.01 "FC(F)(F)Oc1ccc(cc1)CCC(=O)N1CC2CN(CC2C1)C(=O)c1cc2nn[NH]c2cc1"                                                                                                                 
YDN InChI            InChI                1.06  "InChI=1S/C23H22F3N5O3/c24-23(25,26)34-18-5-1-14(2-6-18)3-8-21(32)30-10-16-12-31(13-17(16)11-30)22(33)15-4-7-19-20(9-15)28-29-27-19/h1-2,4-7,9,16-17H,3,8,10-13H2,(H,27,28,29)" 
YDN InChIKey         InChI                1.06  YVIMXMIOEDDRKU-UHFFFAOYSA-N                                                                                                                                                     
YDN SMILES_CANONICAL CACTVS               3.385 "FC(F)(F)Oc1ccc(CCC(=O)N2C[C@@H]3CN(C[C@H]3C2)C(=O)c4ccc5[nH]nnc5c4)cc1"                                                                                                        
YDN SMILES           CACTVS               3.385 "FC(F)(F)Oc1ccc(CCC(=O)N2C[CH]3CN(C[CH]3C2)C(=O)c4ccc5[nH]nnc5c4)cc1"                                                                                                           
YDN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CCC(=O)N2C[C@@H]3CN(C[C@H]3C2)C(=O)c4ccc5c(c4)nn[nH]5)OC(F)(F)F"                                                                                                      
YDN SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CCC(=O)N2CC3CN(CC3C2)C(=O)c4ccc5c(c4)nn[nH]5)OC(F)(F)F"                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YDN "SYSTEMATIC NAME" ACDLabs              12.01 "1-[(3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl]-3-[4-(trifluoromethoxy)phenyl]propan-1-one"                                    
YDN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[(3~{a}~{R},6~{a}~{R})-5-(1~{H}-benzotriazol-5-ylcarbonyl)-1,3,3~{a},4,6,6~{a}-hexahydropyrrolo[3,4-c]pyrrol-2-yl]-3-[4-(trifluoromethyloxy)phenyl]propan-1-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YDN "Create component" 2023-06-13 RCSB 
YDN "Initial release"  2024-12-18 RCSB 
# 
