data_QJN
# 
_chem_comp.id                                    QJN 
_chem_comp.name                                  "(1~{R},2~{S},4~{R},5~{S},6~{R})-6-[(2~{S},3~{R},4~{R},5~{S},6~{R})-5-heptoxy-6-(hydroxymethyl)-3,4-bis(oxidanyl)oxan-2-yl]oxy-5-(hydroxymethyl)cyclohexane-1,2,4-triol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H38 O10" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-06-18 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        438.510 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     QJN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6YQC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
QJN C2     C1  C 0 1 N N R N N N -3.914 18.725 -43.221 0.514   2.517  0.113  C2     QJN 1  
QJN C4     C2  C 0 1 N N S N N N -3.308 20.647 -44.625 -1.178  0.878  -0.709 C4     QJN 2  
QJN C5     C3  C 0 1 N N R N N N -3.656 21.489 -43.430 -0.028  0.068  -1.314 C5     QJN 3  
QJN C6     C4  C 0 1 N N N N N N -4.093 22.915 -43.787 -0.515  -0.642 -2.579 C6     QJN 4  
QJN C8     C5  C 0 1 N N N N N N -2.571 21.937 -46.584 -3.535  0.584  -0.388 C8     QJN 5  
QJN "C1'"  C6  C 0 1 N N N N N N -3.941 19.307 -36.958 5.848   -1.197 0.726  "C1'"  QJN 6  
QJN "C2'"  C7  C 0 1 N N S N N N -3.536 18.108 -37.824 5.769   0.157  0.018  "C2'"  QJN 7  
QJN "O2'"  O1  O 0 1 N N N N N N -2.692 17.186 -37.150 6.900   0.951  0.381  "O2'"  QJN 8  
QJN "C3'"  C8  C 0 1 N N R N N N -2.890 18.565 -39.162 4.485   0.877  0.436  "C3'"  QJN 9  
QJN "O3'"  O2  O 0 1 N N N N N N -2.585 17.446 -39.982 4.412   2.142  -0.225 "O3'"  QJN 10 
QJN "C4'"  C9  C 0 1 N N R N N N -3.843 19.528 -39.785 3.274   0.027  0.047  "C4'"  QJN 11 
QJN "C5'"  C10 C 0 1 N N S N N N -3.944 20.794 -38.988 3.353   -1.327 0.755  "C5'"  QJN 12 
QJN "O6'"  O3  O 0 1 N N N N N N -5.999 21.488 -40.149 2.150   -3.391 1.120  "O6'"  QJN 13 
QJN "C6'"  C11 C 0 1 N N N N N N -4.715 21.904 -39.684 2.141   -2.177 0.366  "C6'"  QJN 14 
QJN "C7'"  C12 C 0 1 N N R N N N -4.630 20.413 -37.657 4.636   -2.047 0.337  "C7'"  QJN 15 
QJN O1     O4  O 0 1 N N N N N N -3.426 19.818 -41.174 2.075   0.700  0.438  O1     QJN 16 
QJN C1     C13 C 0 1 N N S N N N -4.431 19.661 -42.150 1.598   1.643  -0.524 C1     QJN 17 
QJN O5     O5  O 0 1 N N N N N N -4.766 20.932 -42.707 1.050   0.946  -1.644 O5     QJN 18 
QJN O6     O6  O 0 1 N N N N N N -5.250 22.883 -44.637 0.522   -1.489 -3.078 O6     QJN 19 
QJN O4     O7  O 0 1 N N N N N N -2.220 21.266 -45.343 -2.234  -0.004 -0.325 O4     QJN 20 
QJN C3     C14 C 0 1 N N R N N N -2.837 19.289 -44.109 -0.668  1.633  0.522  C3     QJN 21 
QJN O3     O8  O 0 1 N N N N N N -2.532 18.396 -45.197 -1.715  2.449  1.050  O3     QJN 22 
QJN O2     O9  O 0 1 N N N N N N -3.453 17.486 -42.646 1.044   3.171  1.267  O2     QJN 23 
QJN O7     O10 O 0 1 N N N N N N -4.743 21.568 -36.816 4.710   -3.312 0.998  O7     QJN 24 
QJN C9     C15 C 0 1 N N N N N N -1.343 22.035 -47.448 -4.582  -0.446 0.042  C9     QJN 25 
QJN C10    C16 C 0 1 N N N N N N -1.001 20.680 -48.101 -5.974  0.184  -0.025 C10    QJN 26 
QJN C11    C17 C 0 1 N N N N N N 0.370  20.632 -48.821 -7.021  -0.846 0.405  C11    QJN 27 
QJN C12    C18 C 0 1 N N N N N N 0.353  21.398 -50.158 -8.414  -0.216 0.337  C12    QJN 28 
QJN C13    C19 C 0 1 N N N N N N 1.479  21.022 -51.140 -9.460  -1.246 0.768  C13    QJN 29 
QJN C14    C20 C 0 1 N N N N N N 2.744  20.570 -50.439 -10.853 -0.616 0.700  C14    QJN 30 
QJN H2     H1  H 0 1 N N N N N N -4.769 18.489 -43.872 0.179   3.264  -0.607 H2     QJN 31 
QJN H4     H2  H 0 1 N N N N N N -4.189 20.519 -45.271 -1.548  1.591  -1.446 H4     QJN 32 
QJN H5     H3  H 0 1 N N N N N N -2.777 21.550 -42.771 0.314   -0.673 -0.591 H5     QJN 33 
QJN H62    H4  H 0 1 N N N N N N -3.272 23.426 -44.311 -1.393  -1.242 -2.344 H62    QJN 34 
QJN H61    H5  H 0 1 N N N N N N -4.336 23.462 -42.864 -0.773  0.100  -3.335 H61    QJN 35 
QJN H81    H6  H 0 1 N N N N N N -2.950 22.946 -46.364 -3.577  1.445  0.278  H81    QJN 36 
QJN H8     H7  H 0 1 N N N N N N -3.347 21.361 -47.109 -3.739  0.905  -1.410 H8     QJN 37 
QJN "H1'1" H8  H 0 0 N N N N N N -4.612 18.939 -36.168 6.762   -1.710 0.428  "H1'1" QJN 38 
QJN H6     H9  H 0 1 N N N N N N -3.027 19.716 -36.502 5.852   -1.044 1.805  H6     QJN 39 
QJN "H2'"  H10 H 0 1 N N N N N N -4.466 17.585 -38.091 5.764   0.003  -1.061 "H2'"  QJN 40 
QJN "HO2'" H11 H 0 0 N N N N N N -3.102 16.918 -36.336 7.751   0.555  0.146  "HO2'" QJN 41 
QJN "H3'"  H12 H 0 1 N N N N N N -1.962 19.103 -38.918 4.490   1.031  1.515  "H3'"  QJN 42 
QJN "HO3'" H13 H 0 0 N N N N N N -1.976 16.876 -39.527 5.149   2.734  -0.024 "HO3'" QJN 43 
QJN "H4'"  H14 H 0 1 N N N N N N -4.838 19.060 -39.812 3.269   -0.127 -1.032 "H4'"  QJN 44 
QJN "H5'"  H15 H 0 1 N N N N N N -2.930 21.157 -38.764 3.358   -1.173 1.834  "H5'"  QJN 45 
QJN "HO6'" H16 H 0 0 N N N N N N -6.434 22.218 -40.574 1.408   -3.980 0.925  "HO6'" QJN 46 
QJN "H6'1" H17 H 0 0 N N N N N N -4.126 22.252 -40.546 1.227   -1.624 0.578  "H6'1" QJN 47 
QJN "H6'2" H18 H 0 0 N N N N N N -4.852 22.733 -38.974 2.187   -2.410 -0.698 "H6'2" QJN 48 
QJN "H7'"  H19 H 0 1 N N N N N N -5.644 20.069 -37.908 4.632   -2.201 -0.742 "H7'"  QJN 49 
QJN H1     H20 H 0 1 N N N N N N -5.326 19.210 -41.696 2.424   2.272  -0.856 H1     QJN 50 
QJN HO6    H21 H 0 1 N N N N N N -5.511 23.771 -44.851 0.283   -1.972 -3.882 HO6    QJN 51 
QJN H3     H22 H 0 1 N N N N N N -1.933 19.447 -43.503 -0.344  0.919  1.279  H3     QJN 52 
QJN HO3    H23 H 0 1 N N N N N N -2.242 17.561 -44.850 -1.461  2.957  1.833  HO3    QJN 53 
QJN HO2    H24 H 0 1 N N N N N N -4.129 17.126 -42.084 1.800   3.744  1.082  HO2    QJN 54 
QJN HO7    H25 H 0 1 N N N N N N -5.165 21.326 -36.000 5.500   -3.825 0.779  HO7    QJN 55 
QJN H91    H26 H 0 1 N N N N N N -0.494 22.357 -46.827 -4.540  -1.307 -0.624 H91    QJN 56 
QJN H9     H27 H 0 1 N N N N N N -1.521 22.778 -48.239 -4.377  -0.767 1.064  H9     QJN 57 
QJN H101   H28 H 0 0 N N N N N N -1.783 20.449 -48.839 -6.016  1.045  0.641  H101   QJN 58 
QJN H10    H29 H 0 1 N N N N N N -1.001 19.911 -47.314 -6.179  0.505  -1.047 H10    QJN 59 
QJN H111   H30 H 0 0 N N N N N N 0.630  19.581 -49.018 -6.979  -1.707 -0.262 H111   QJN 60 
QJN H11    H31 H 0 1 N N N N N N 1.130  21.081 -48.165 -6.817  -1.166 1.426  H11    QJN 61 
QJN H121   H32 H 0 0 N N N N N N 0.438  22.472 -49.937 -8.456  0.645  1.004  H121   QJN 62 
QJN H12    H33 H 0 1 N N N N N N -0.610 21.201 -50.652 -8.618  0.105  -0.684 H12    QJN 63 
QJN H131   H34 H 0 0 N N N N N N 1.715  21.901 -51.758 -9.418  -2.107 0.101  H131   QJN 64 
QJN H13    H35 H 0 1 N N N N N N 1.124  20.205 -51.785 -9.256  -1.566 1.789  H13    QJN 65 
QJN H14    H36 H 0 1 N N N N N N 3.508  20.316 -51.188 -10.895 0.245  1.367  H14    QJN 66 
QJN H141   H37 H 0 0 N N N N N N 3.116  21.381 -49.796 -11.058 -0.295 -0.322 H141   QJN 67 
QJN H7     H38 H 0 1 N N N N N N 2.526  19.685 -49.824 -11.599 -1.349 1.007  H7     QJN 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
QJN C13   C14    SING N N 1  
QJN C13   C12    SING N N 2  
QJN C12   C11    SING N N 3  
QJN C11   C10    SING N N 4  
QJN C10   C9     SING N N 5  
QJN C9    C8     SING N N 6  
QJN C8    O4     SING N N 7  
QJN O4    C4     SING N N 8  
QJN O3    C3     SING N N 9  
QJN O6    C6     SING N N 10 
QJN C4    C3     SING N N 11 
QJN C4    C5     SING N N 12 
QJN C3    C2     SING N N 13 
QJN C6    C5     SING N N 14 
QJN C5    O5     SING N N 15 
QJN C2    O2     SING N N 16 
QJN C2    C1     SING N N 17 
QJN O5    C1     SING N N 18 
QJN C1    O1     SING N N 19 
QJN O1    "C4'"  SING N N 20 
QJN "O6'" "C6'"  SING N N 21 
QJN "O3'" "C3'"  SING N N 22 
QJN "C4'" "C3'"  SING N N 23 
QJN "C4'" "C5'"  SING N N 24 
QJN "C6'" "C5'"  SING N N 25 
QJN "C3'" "C2'"  SING N N 26 
QJN "C5'" "C7'"  SING N N 27 
QJN "C2'" "O2'"  SING N N 28 
QJN "C2'" "C1'"  SING N N 29 
QJN "C7'" "C1'"  SING N N 30 
QJN "C7'" O7     SING N N 31 
QJN C2    H2     SING N N 32 
QJN C4    H4     SING N N 33 
QJN C5    H5     SING N N 34 
QJN C6    H62    SING N N 35 
QJN C6    H61    SING N N 36 
QJN C8    H81    SING N N 37 
QJN C8    H8     SING N N 38 
QJN "C1'" "H1'1" SING N N 39 
QJN "C1'" H6     SING N N 40 
QJN "C2'" "H2'"  SING N N 41 
QJN "O2'" "HO2'" SING N N 42 
QJN "C3'" "H3'"  SING N N 43 
QJN "O3'" "HO3'" SING N N 44 
QJN "C4'" "H4'"  SING N N 45 
QJN "C5'" "H5'"  SING N N 46 
QJN "O6'" "HO6'" SING N N 47 
QJN "C6'" "H6'1" SING N N 48 
QJN "C6'" "H6'2" SING N N 49 
QJN "C7'" "H7'"  SING N N 50 
QJN C1    H1     SING N N 51 
QJN O6    HO6    SING N N 52 
QJN C3    H3     SING N N 53 
QJN O3    HO3    SING N N 54 
QJN O2    HO2    SING N N 55 
QJN O7    HO7    SING N N 56 
QJN C9    H91    SING N N 57 
QJN C9    H9     SING N N 58 
QJN C10   H101   SING N N 59 
QJN C10   H10    SING N N 60 
QJN C11   H111   SING N N 61 
QJN C11   H11    SING N N 62 
QJN C12   H121   SING N N 63 
QJN C12   H12    SING N N 64 
QJN C13   H131   SING N N 65 
QJN C13   H13    SING N N 66 
QJN C14   H14    SING N N 67 
QJN C14   H141   SING N N 68 
QJN C14   H7     SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
QJN InChI            InChI                1.03  "InChI=1S/C20H38O10/c1-2-3-4-5-6-7-28-19-14(10-22)29-20(17(27)16(19)26)30-18-11(9-21)12(23)8-13(24)15(18)25/h11-27H,2-10H2,1H3/t11-,12+,13-,14+,15+,16+,17+,18+,19+,20+/m0/s1" 
QJN InChIKey         InChI                1.03  JXHBWOMWKSCDSB-ZXVXKJDSSA-N                                                                                                                                                    
QJN SMILES_CANONICAL CACTVS               3.385 "CCCCCCCO[C@H]1[C@H](O)[C@@H](O)[C@H](O[C@@H]1CO)O[C@H]2[C@H](O)[C@@H](O)C[C@@H](O)[C@@H]2CO"                                                                                  
QJN SMILES           CACTVS               3.385 "CCCCCCCO[CH]1[CH](O)[CH](O)[CH](O[CH]1CO)O[CH]2[CH](O)[CH](O)C[CH](O)[CH]2CO"                                                                                                 
QJN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCO[C@@H]1[C@H](O[C@@H]([C@@H]([C@H]1O)O)O[C@@H]2[C@H]([C@@H](C[C@@H]([C@H]2O)O)O)CO)CO"                                                                                 
QJN SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCCCCOC1C(OC(C(C1O)O)OC2C(C(CC(C2O)O)O)CO)CO"                                                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           QJN 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(1~{R},2~{S},4~{R},5~{S},6~{R})-6-[(2~{S},3~{R},4~{R},5~{S},6~{R})-5-heptoxy-6-(hydroxymethyl)-3,4-bis(oxidanyl)oxan-2-yl]oxy-5-(hydroxymethyl)cyclohexane-1,2,4-triol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
QJN "Create component" 2020-06-18 PDBE 
QJN "Initial release"  2021-02-10 RCSB 
QJN "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            QJN 
_pdbx_chem_comp_pcm.modified_residue_id                ASP 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               "C1'" 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OD1 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
