data_LRN
# 
_chem_comp.id                                    LRN 
_chem_comp.name                                  "1-[(3R)-3-{(cyclohexylmethyl)[(1r,4R)-4-hydroxycyclohexyl]amino}piperidin-1-yl]ethan-1-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H36 N2 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-15 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        336.512 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LRN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7GCR 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LRN N1  N1  N 0 1 N N N N N N 7.726  -4.622 21.278 3.013  1.503  -0.381 N1  LRN 1  
LRN C4  C1  C 0 1 N N N N N N 8.719  -0.075 25.362 0.194  -2.165 1.139  C4  LRN 2  
LRN C5  C2  C 0 1 N N N N N N 7.846  0.684  26.372 0.545  -3.649 1.016  C5  LRN 3  
LRN C6  C3  C 0 1 N N N N N N 10.062 -2.718 24.807 -1.468 0.056  0.764  C6  LRN 4  
LRN C7  C4  C 0 1 N N N N N N 11.412 -2.594 24.070 -2.294 1.253  0.287  C7  LRN 5  
LRN C8  C5  C 0 1 N N N N N N 12.569 -2.420 25.057 -3.418 1.528  1.287  C8  LRN 6  
LRN C10 C6  C 0 1 N N N N N N 13.974 -1.272 23.298 -4.846 2.414  -0.561 C10 LRN 7  
LRN C13 C7  C 0 1 N N R N N N 8.128  -3.328 23.316 0.837  0.639  0.305  C13 LRN 8  
LRN C15 C8  C 0 1 N N N N N N 6.752  -5.449 23.374 1.615  2.893  1.057  C15 LRN 9  
LRN C17 C9  C 0 1 N N N N N N 8.687  -3.754 21.967 1.915  0.614  -0.783 C17 LRN 10 
LRN N   N2  N 0 1 N N N N N N 8.831  -2.241 24.037 -0.326 -0.142 -0.139 N   LRN 11 
LRN C11 C10 C 0 1 N N N N N N 12.816 -1.427 22.313 -3.722 2.139  -1.562 C11 LRN 12 
LRN C1  C11 C 0 1 N N N N N N 5.787  -0.189 25.273 -0.769 -3.784 -1.105 C1  LRN 13 
LRN C18 C12 C 0 1 N N N N N N 7.204  -4.370 20.059 4.283  1.053  -0.346 C18 LRN 14 
LRN O1  O1  O 0 1 N N N N N N 6.356  -5.083 19.559 4.528  -0.096 -0.649 O1  LRN 15 
LRN C2  C13 C 0 1 N N N N N N 6.635  -0.942 24.243 -1.120 -2.299 -0.982 C2  LRN 16 
LRN C16 C14 C 0 1 N N N N N N 7.352  -5.829 22.028 2.702  2.893  -0.023 C16 LRN 17 
LRN C9  C15 C 0 1 N N N N N N 13.934 -2.361 24.364 -4.244 2.724  0.810  C9  LRN 18 
LRN C12 C16 C 0 1 N N N N N N 11.467 -1.472 23.035 -2.896 0.943  -1.085 C12 LRN 19 
LRN C19 C17 C 0 1 N N N N N N 7.724  -3.171 19.292 5.399  1.977  0.068  C19 LRN 20 
LRN C14 C18 C 0 1 N N N N N N 7.702  -4.538 24.154 0.412  2.086  0.563  C14 LRN 21 
LRN C   C19 C 0 1 N N N N N N 6.501  1.050  25.773 -0.586 -4.382 0.291  C   LRN 22 
LRN O   O2  O 0 1 N N N N N N 5.695  1.727  26.731 -0.258 -5.768 0.176  O   LRN 23 
LRN C3  C20 C 0 1 N N N N N N 7.996  -1.317 24.834 0.011  -1.567 -0.257 C3  LRN 24 
LRN H1  H1  H 0 1 N N N N N N 9.652  -0.385 25.855 -0.731 -2.056 1.705  H1  LRN 25 
LRN H2  H2  H 0 1 N N N N N N 8.953  0.590  24.518 1.000  -1.643 1.655  H2  LRN 26 
LRN H3  H3  H 0 1 N N N N N N 7.684  0.048  27.255 1.470  -3.758 0.449  H3  LRN 27 
LRN H4  H4  H 0 1 N N N N N N 8.366  1.605  26.674 0.676  -4.076 2.010  H4  LRN 28 
LRN H5  H5  H 0 1 N N N N N N 10.129 -2.128 25.733 -1.105 0.245  1.774  H5  LRN 29 
LRN H6  H6  H 0 1 N N N N N N 9.912  -3.778 25.058 -2.091 -0.839 0.763  H6  LRN 30 
LRN H7  H7  H 0 1 N N N N N N 11.578 -3.541 23.536 -1.651 2.130  0.212  H7  LRN 31 
LRN H8  H8  H 0 1 N N N N N N 12.417 -1.485 25.616 -4.060 0.650  1.362  H8  LRN 32 
LRN H9  H9  H 0 1 N N N N N N 12.566 -3.269 25.756 -2.989 1.749  2.264  H9  LRN 33 
LRN H10 H10 H 0 1 N N N N N N 14.925 -1.341 22.749 -5.434 3.267  -0.901 H10 LRN 34 
LRN H11 H11 H 0 1 N N N N N N 13.902 -0.289 23.786 -5.488 1.537  -0.486 H11 LRN 35 
LRN H12 H12 H 0 1 N N N N N N 7.165  -2.869 23.047 1.235  0.208  1.223  H12 LRN 36 
LRN H13 H13 H 0 1 N N N N N N 5.801  -4.922 23.209 2.007  2.441  1.968  H13 LRN 37 
LRN H14 H14 H 0 1 N N N N N N 6.568  -6.363 23.958 1.306  3.918  1.263  H14 LRN 38 
LRN H15 H15 H 0 1 N N N N N N 9.629  -4.302 22.119 1.491  0.960  -1.726 H15 LRN 39 
LRN H16 H16 H 0 1 N N N N N N 8.877  -2.861 21.353 2.291  -0.402 -0.901 H16 LRN 40 
LRN H18 H18 H 0 1 N N N N N N 12.950 -2.361 21.748 -4.151 1.918  -2.539 H18 LRN 41 
LRN H19 H19 H 0 1 N N N N N N 12.821 -0.574 21.618 -3.079 3.017  -1.637 H19 LRN 42 
LRN H20 H20 H 0 1 N N N N N N 4.837  0.109  24.806 -1.574 -4.306 -1.621 H20 LRN 43 
LRN H21 H21 H 0 1 N N N N N N 5.584  -0.854 26.125 0.156  -3.892 -1.671 H21 LRN 44 
LRN H22 H22 H 0 1 N N N N N N 6.788  -0.300 23.363 -1.250 -1.873 -1.976 H22 LRN 45 
LRN H23 H23 H 0 1 N N N N N N 6.107  -1.859 23.941 -2.045 -2.191 -0.415 H23 LRN 46 
LRN H24 H24 H 0 1 N N N N N N 6.612  -6.401 21.449 3.598  3.381  0.361  H24 LRN 47 
LRN H25 H25 H 0 1 N N N N N N 8.247  -6.447 22.191 2.342  3.426  -0.904 H25 LRN 48 
LRN H26 H26 H 0 1 N N N N N N 14.136 -3.333 23.890 -5.045 2.921  1.523  H26 LRN 49 
LRN H27 H27 H 0 1 N N N N N N 14.708 -2.152 25.117 -3.601 3.602  0.735  H27 LRN 50 
LRN H28 H28 H 0 1 N N N N N N 11.304 -0.511 23.544 -2.095 0.747  -1.798 H28 LRN 51 
LRN H29 H29 H 0 1 N N N N N N 10.672 -1.634 22.293 -3.538 0.065  -1.010 H29 LRN 52 
LRN H30 H30 H 0 1 N N N N N N 7.220  -3.113 18.316 5.218  2.333  1.083  H30 LRN 53 
LRN H31 H31 H 0 1 N N N N N N 7.521  -2.254 19.864 6.347  1.440  0.036  H31 LRN 54 
LRN H32 H32 H 0 1 N N N N N N 8.808  -3.276 19.139 5.439  2.827  -0.613 H32 LRN 55 
LRN H33 H33 H 0 1 N N N N N N 8.597  -5.112 24.436 0.035  2.525  -0.361 H33 LRN 56 
LRN H34 H34 H 0 1 N N N N N N 7.193  -4.183 25.062 -0.373 2.105  1.319  H34 LRN 57 
LRN H35 H35 H 0 1 N N N N N N 6.679  1.713  24.913 -1.510 -4.273 0.857  H35 LRN 58 
LRN H36 H36 H 0 1 N N N N N N 6.151  2.502  27.038 -0.127 -6.213 1.024  H36 LRN 59 
LRN H37 H37 H 0 1 N N N N N N 7.745  -1.885 25.742 0.936  -1.675 -0.823 H37 LRN 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LRN C19 C18 SING N N 1  
LRN O1  C18 DOUB N N 2  
LRN C18 N1  SING N N 3  
LRN N1  C17 SING N N 4  
LRN N1  C16 SING N N 5  
LRN C17 C13 SING N N 6  
LRN C16 C15 SING N N 7  
LRN C11 C12 SING N N 8  
LRN C11 C10 SING N N 9  
LRN C12 C7  SING N N 10 
LRN C10 C9  SING N N 11 
LRN C13 N   SING N N 12 
LRN C13 C14 SING N N 13 
LRN C15 C14 SING N N 14 
LRN N   C6  SING N N 15 
LRN N   C3  SING N N 16 
LRN C7  C6  SING N N 17 
LRN C7  C8  SING N N 18 
LRN C2  C3  SING N N 19 
LRN C2  C1  SING N N 20 
LRN C9  C8  SING N N 21 
LRN C3  C4  SING N N 22 
LRN C1  C   SING N N 23 
LRN C4  C5  SING N N 24 
LRN C   C5  SING N N 25 
LRN C   O   SING N N 26 
LRN C4  H1  SING N N 27 
LRN C4  H2  SING N N 28 
LRN C5  H3  SING N N 29 
LRN C5  H4  SING N N 30 
LRN C6  H5  SING N N 31 
LRN C6  H6  SING N N 32 
LRN C7  H7  SING N N 33 
LRN C8  H8  SING N N 34 
LRN C8  H9  SING N N 35 
LRN C10 H10 SING N N 36 
LRN C10 H11 SING N N 37 
LRN C13 H12 SING N N 38 
LRN C15 H13 SING N N 39 
LRN C15 H14 SING N N 40 
LRN C17 H15 SING N N 41 
LRN C17 H16 SING N N 42 
LRN C11 H18 SING N N 43 
LRN C11 H19 SING N N 44 
LRN C1  H20 SING N N 45 
LRN C1  H21 SING N N 46 
LRN C2  H22 SING N N 47 
LRN C2  H23 SING N N 48 
LRN C16 H24 SING N N 49 
LRN C16 H25 SING N N 50 
LRN C9  H26 SING N N 51 
LRN C9  H27 SING N N 52 
LRN C12 H28 SING N N 53 
LRN C12 H29 SING N N 54 
LRN C19 H30 SING N N 55 
LRN C19 H31 SING N N 56 
LRN C19 H32 SING N N 57 
LRN C14 H33 SING N N 58 
LRN C14 H34 SING N N 59 
LRN C   H35 SING N N 60 
LRN O   H36 SING N N 61 
LRN C3  H37 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LRN SMILES           ACDLabs              12.01 "O=C(C)N1CCCC(C1)N(CC1CCCCC1)C1CCC(O)CC1"                                                                                               
LRN InChI            InChI                1.06  "InChI=1S/C20H36N2O2/c1-16(23)21-13-5-8-19(15-21)22(14-17-6-3-2-4-7-17)18-9-11-20(24)12-10-18/h17-20,24H,2-15H2,1H3/t18-,19-,20-/m1/s1" 
LRN InChIKey         InChI                1.06  BWGFBDXTNPNCAD-VAMGGRTRSA-N                                                                                                             
LRN SMILES_CANONICAL CACTVS               3.385 "CC(=O)N1CCC[C@H](C1)N(CC2CCCCC2)[C@H]3CC[C@H](O)CC3"                                                                                   
LRN SMILES           CACTVS               3.385 "CC(=O)N1CCC[CH](C1)N(CC2CCCCC2)[CH]3CC[CH](O)CC3"                                                                                      
LRN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N1CCC[C@H](C1)N(CC2CCCCC2)C3CCC(CC3)O"                                                                                           
LRN SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)N1CCCC(C1)N(CC2CCCCC2)C3CCC(CC3)O"                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LRN "SYSTEMATIC NAME" ACDLabs              12.01 "1-[(3R)-3-{(cyclohexylmethyl)[(1r,4R)-4-hydroxycyclohexyl]amino}piperidin-1-yl]ethan-1-one" 
LRN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[(3~{R})-3-[cyclohexylmethyl-(4-oxidanylcyclohexyl)amino]piperidin-1-yl]ethanone"         
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LRN "Create component" 2023-08-15 RCSB 
LRN "Initial release"  2023-11-08 RCSB 
LRN "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            LRN 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C19 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
