data_9YN
# 
_chem_comp.id                                    9YN 
_chem_comp.name                                  "(2~{S})-~{N}-[(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl]-2-azanyl-4-methyl-pentanamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H25 N7 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-08-03 
_chem_comp.pdbx_modified_date                    2017-11-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        379.414 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9YN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5ON3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9YN O   O1  O 0 1 N N N 24.472 29.028 1.798  -1.689 -0.269 2.177  O   9YN 1  
9YN C   C1  C 0 1 N N N 23.395 28.900 2.366  -1.845 -0.495 0.996  C   9YN 2  
9YN CA  C2  C 0 1 N N S 22.238 29.795 2.003  -2.891 -1.484 0.550  CA  9YN 3  
9YN CB  C3  C 0 1 N N N 21.870 29.690 0.517  -4.140 -0.731 0.086  CB  9YN 4  
9YN CG1 C4  C 0 1 N N N 20.559 28.934 0.295  -5.154 -1.726 -0.482 CG1 9YN 5  
9YN CD1 C5  C 0 1 N N N 20.688 27.489 0.773  -6.450 -0.992 -0.830 CD1 9YN 6  
9YN CD2 C6  C 0 1 N N N 20.097 29.047 -1.161 -4.580 -2.374 -1.744 CD2 9YN 7  
9YN N   N1  N 0 1 N N N 22.588 31.195 2.317  -3.239 -2.367 1.671  N   9YN 8  
9YN NAI N2  N 0 1 N N N 23.155 28.011 3.334  -1.087 0.143  0.082  NAI 9YN 9  
9YN CAJ C7  C 0 1 N N R 24.155 27.072 3.843  -0.075 1.109  0.515  CAJ 9YN 10 
9YN CAK C8  C 0 1 N N S 23.978 25.684 3.237  -0.679 2.528  0.594  CAK 9YN 11 
9YN OAL O2  O 0 1 N N N 23.053 25.653 2.144  -2.059 2.506  0.222  OAL 9YN 12 
9YN CAM C9  C 0 1 N N R 23.485 24.790 4.370  0.144  3.344  -0.428 CAM 9YN 13 
9YN CAN C10 C 0 1 N N N 24.366 23.562 4.574  0.381  4.763  0.091  CAN 9YN 14 
9YN OAO O3  O 0 1 N N N 23.646 22.576 5.320  1.041  5.534  -0.915 OAO 9YN 15 
9YN OAP O4  O 0 1 N N N 23.468 25.568 5.570  1.396  2.634  -0.543 OAP 9YN 16 
9YN CAQ C11 C 0 1 N N R 23.889 26.916 5.342  1.042  1.234  -0.545 CAQ 9YN 17 
9YN N9  N3  N 0 1 Y N N 25.093 27.183 6.174  2.197  0.415  -0.168 N9  9YN 18 
9YN C8  C12 C 0 1 Y N N 26.370 26.842 5.895  3.299  0.840  0.512  C8  9YN 19 
9YN N7  N4  N 0 1 Y N N 27.204 27.245 6.883  4.129  -0.149 0.676  N7  9YN 20 
9YN C5  C13 C 0 1 Y N N 26.460 27.844 7.829  3.613  -1.268 0.114  C5  9YN 21 
9YN C4  C14 C 0 1 Y N N 25.064 27.802 7.356  2.365  -0.921 -0.430 C4  9YN 22 
9YN C6  C15 C 0 1 Y N N 26.748 28.491 9.132  4.046  -2.599 -0.016 C6  9YN 23 
9YN N6  N5  N 0 1 N N N 28.020 28.545 9.590  5.263  -3.002 0.504  N6  9YN 24 
9YN N1  N6  N 0 1 Y N N 25.727 29.019 9.851  3.259  -3.462 -0.650 N1  9YN 25 
9YN C2  C16 C 0 1 Y N N 24.318 28.997 9.413  2.095  -3.087 -1.150 C2  9YN 26 
9YN N3  N7  N 0 1 Y N N 24.074 28.348 8.111  1.644  -1.855 -1.041 N3  9YN 27 
9YN H1  H1  H 0 1 N N N 21.362 29.500 2.599  -2.500 -2.080 -0.275 H1  9YN 28 
9YN H2  H2  H 0 1 N N N 22.677 29.161 -0.011 -4.583 -0.206 0.933  H2  9YN 29 
9YN H3  H3  H 0 1 N N N 21.767 30.705 0.106  -3.866 -0.012 -0.685 H3  9YN 30 
9YN H4  H4  H 0 1 N N N 19.793 29.418 0.919  -5.361 -2.498 0.259  H4  9YN 31 
9YN H5  H5  H 0 1 N N N 21.022 27.477 1.821  -6.242 -0.220 -1.572 H5  9YN 32 
9YN H6  H6  H 0 1 N N N 19.712 26.988 0.694  -7.172 -1.701 -1.235 H6  9YN 33 
9YN H7  H7  H 0 1 N N N 21.423 26.961 0.148  -6.859 -0.530 0.069  H7  9YN 34 
9YN H8  H8  H 0 1 N N N 19.154 28.495 -1.291 -3.657 -2.897 -1.496 H8  9YN 35 
9YN H9  H9  H 0 1 N N N 19.940 30.106 -1.415 -5.302 -3.083 -2.149 H9  9YN 36 
9YN H10 H10 H 0 1 N N N 20.865 28.621 -1.823 -4.372 -1.602 -2.486 H10 9YN 37 
9YN H11 H11 H 0 1 N N N 22.829 31.270 3.285  -3.605 -1.838 2.448  H11 9YN 38 
9YN H12 H12 H 0 1 N N N 23.367 31.477 1.757  -3.891 -3.080 1.380  H12 9YN 39 
9YN H14 H14 H 0 1 N N N 22.239 27.986 3.734  -1.212 -0.038 -0.863 H14 9YN 40 
9YN H15 H15 H 0 1 N N N 25.177 27.441 3.670  0.344  0.816  1.478  H15 9YN 41 
9YN H16 H16 H 0 1 N N N 24.961 25.319 2.905  -0.560 2.940  1.596  H16 9YN 42 
9YN H17 H17 H 0 1 N N N 22.986 24.766 1.811  -2.489 3.372  0.253  H17 9YN 43 
9YN H18 H18 H 0 1 N N N 22.466 24.453 4.130  -0.368 3.373  -1.390 H18 9YN 44 
9YN H19 H19 H 0 1 N N N 24.649 23.147 3.595  -0.575 5.226  0.334  H19 9YN 45 
9YN H20 H20 H 0 1 N N N 25.273 23.849 5.126  1.003  4.724  0.985  H20 9YN 46 
9YN H21 H21 H 0 1 N N N 24.195 21.811 5.447  1.224  6.447  -0.654 H21 9YN 47 
9YN H22 H22 H 0 1 N N N 23.089 27.613 5.631  0.669  0.938  -1.525 H22 9YN 48 
9YN H23 H23 H 0 1 N N N 26.684 26.318 5.004  3.461  1.849  0.863  H23 9YN 49 
9YN H24 H24 H 0 1 N N N 28.036 29.008 10.476 5.829  -2.362 0.965  H24 9YN 50 
9YN H25 H25 H 0 1 N N N 28.377 27.617 9.693  5.551  -3.923 0.408  H25 9YN 51 
9YN H26 H26 H 0 1 N N N 23.522 29.426 10.004 1.487  -3.820 -1.658 H26 9YN 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9YN CD2 CG1 SING N N 1  
9YN CG1 CB  SING N N 2  
9YN CG1 CD1 SING N N 3  
9YN CB  CA  SING N N 4  
9YN O   C   DOUB N N 5  
9YN CA  N   SING N N 6  
9YN CA  C   SING N N 7  
9YN OAL CAK SING N N 8  
9YN C   NAI SING N N 9  
9YN CAK CAJ SING N N 10 
9YN CAK CAM SING N N 11 
9YN NAI CAJ SING N N 12 
9YN CAJ CAQ SING N N 13 
9YN CAM CAN SING N N 14 
9YN CAM OAP SING N N 15 
9YN CAN OAO SING N N 16 
9YN CAQ OAP SING N N 17 
9YN CAQ N9  SING N N 18 
9YN C8  N9  SING Y N 19 
9YN C8  N7  DOUB Y N 20 
9YN N9  C4  SING Y N 21 
9YN N7  C5  SING Y N 22 
9YN C4  C5  DOUB Y N 23 
9YN C4  N3  SING Y N 24 
9YN C5  C6  SING Y N 25 
9YN N3  C2  DOUB Y N 26 
9YN C6  N6  SING N N 27 
9YN C6  N1  DOUB Y N 28 
9YN C2  N1  SING Y N 29 
9YN CA  H1  SING N N 30 
9YN CB  H2  SING N N 31 
9YN CB  H3  SING N N 32 
9YN CG1 H4  SING N N 33 
9YN CD1 H5  SING N N 34 
9YN CD1 H6  SING N N 35 
9YN CD1 H7  SING N N 36 
9YN CD2 H8  SING N N 37 
9YN CD2 H9  SING N N 38 
9YN CD2 H10 SING N N 39 
9YN N   H11 SING N N 40 
9YN N   H12 SING N N 41 
9YN NAI H14 SING N N 42 
9YN CAJ H15 SING N N 43 
9YN CAK H16 SING N N 44 
9YN OAL H17 SING N N 45 
9YN CAM H18 SING N N 46 
9YN CAN H19 SING N N 47 
9YN CAN H20 SING N N 48 
9YN OAO H21 SING N N 49 
9YN CAQ H22 SING N N 50 
9YN C8  H23 SING N N 51 
9YN N6  H24 SING N N 52 
9YN N6  H25 SING N N 53 
9YN C2  H26 SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9YN InChI            InChI                1.03  "InChI=1S/C16H25N7O4/c1-7(2)3-8(17)15(26)22-10-12(25)9(4-24)27-16(10)23-6-21-11-13(18)19-5-20-14(11)23/h5-10,12,16,24-25H,3-4,17H2,1-2H3,(H,22,26)(H2,18,19,20)/t8-,9+,10+,12+,16+/m0/s1" 
9YN InChIKey         InChI                1.03  NMAIYRCXMINABF-GBPQWNHNSA-N                                                                                                                                                               
9YN SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](N)C(=O)N[C@@H]1[C@H](O)[C@@H](CO)O[C@H]1n2cnc3c(N)ncnc23"                                                                                                                    
9YN SMILES           CACTVS               3.385 "CC(C)C[CH](N)C(=O)N[CH]1[CH](O)[CH](CO)O[CH]1n2cnc3c(N)ncnc23"                                                                                                                           
9YN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)C[C@@H](C(=O)N[C@@H]1[C@@H]([C@H](O[C@H]1n2cnc3c2ncnc3N)CO)O)N"                                                                                                                     
9YN SMILES           "OpenEye OEToolkits" 2.0.6 "CC(C)CC(C(=O)NC1C(C(OC1n2cnc3c2ncnc3N)CO)O)N"                                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9YN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-~{N}-[(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl]-2-azanyl-4-methyl-pentanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9YN "Create component"   2017-08-03 EBI  
9YN "Other modification" 2017-08-09 EBI  
9YN "Initial release"    2017-11-15 RCSB 
# 
