data_8SN
# 
_chem_comp.id                                    8SN 
_chem_comp.name                                  "(3~{S},7~{R},10~{R},11~{R},13~{S})-11-methyl-2-oxidanylidene-1,4-diazatricyclo[8.3.0.0^{3,7}]tridec-8-ene-13-carboxylic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H18 N2 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-03-03 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        250.294 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8SN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5NBX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8SN N   N2  N 0 1 N N N Y Y N -22.780 -1.499 8.115  2.943  1.216  -0.468 N2  8SN 1  
8SN C22 C22 C 0 1 N N N N N N -21.989 -0.483 7.273  4.064  0.630  0.306  C22 8SN 2  
8SN C23 C23 C 0 1 N N N N N N -20.649 -0.493 7.890  3.634  -0.800 0.721  C23 8SN 3  
8SN C8  C8  C 0 1 N N R N N N -21.094 -0.369 9.339  2.097  -0.723 0.626  C8  8SN 4  
8SN CA  C21 C 0 1 N N S Y N N -22.112 -1.492 9.454  1.903  0.192  -0.576 C21 8SN 5  
8SN C25 C25 C 0 1 N N N Y N N -22.953 -1.185 10.570 0.531  0.641  -0.788 C25 8SN 6  
8SN O7  O7  O 0 1 N N N N N N -24.112 -0.738 10.448 0.399  1.784  -1.173 O7  8SN 7  
8SN C7  C7  C 0 1 N N N N N N -20.028 -0.586 10.227 1.420  -2.018 0.493  C7  8SN 8  
8SN C6  C6  C 0 1 N N N N N N -20.070 -1.224 11.459 0.289  -2.305 0.013  C6  8SN 9  
8SN C5  C5  C 0 1 N N R N N N -21.190 -1.783 12.134 -0.810 -1.493 -0.557 C5  8SN 10 
8SN C4  C4  C 0 1 N N R N N N -21.089 -1.494 13.649 -2.065 -1.689 0.333  C4  8SN 11 
8SN C3  C3  C 0 1 N N N N N N -22.494 -1.697 14.090 -2.913 -0.433 0.052  C3  8SN 12 
8SN C2  C2  C 0 1 N N S Y N N -23.307 -0.920 13.083 -1.924 0.598  -0.510 C2  8SN 13 
8SN N1  N1  N 0 1 N N N Y N N -22.518 -1.221 11.812 -0.597 -0.049 -0.612 N1  8SN 14 
8SN C   C1  C 0 1 N N N Y N Y -23.467 0.479  13.350 -1.844 1.785  0.415  C1  8SN 15 
8SN O   O2  O 0 1 N N N Y N Y -22.659 1.301  12.910 -0.794 2.071  0.941  O2  8SN 16 
8SN C47 C47 C 0 1 N N N N N N -20.145 -2.491 14.335 -2.824 -2.952 -0.079 C47 8SN 17 
8SN OXT O1  O 0 1 N N N Y N Y -24.530 0.813  13.939 -2.938 2.524  0.655  O1  8SN 18 
8SN H   H1  H 0 1 N Y N Y Y N -23.736 -1.219 8.197  2.588  2.047  -0.019 H1  8SN 19 
8SN H96 H96 H 0 1 N N N N N N -22.443 0.517  7.335  4.959  0.583  -0.313 H96 8SN 20 
8SN H97 H97 H 0 1 N N N N N N -21.940 -0.799 6.220  4.256  1.232  1.195  H97 8SN 21 
8SN H23 H23 H 0 1 N N N N N N -20.107 -1.431 7.698  4.029  -1.541 0.026  H23 8SN 22 
8SN H95 H95 H 0 1 N N N N N N -20.033 0.359  7.567  3.949  -1.019 1.742  H95 8SN 23 
8SN H8  H8  H 0 1 N N N N N N -21.579 0.604  9.507  1.712  -0.225 1.516  H8  8SN 24 
8SN HA  H21 H 0 1 N N N Y N N -21.588 -2.446 9.613  2.157  -0.406 -1.451 H21 8SN 25 
8SN H7  H7  H 0 1 N N N N N N -19.064 -0.213 9.915  1.981  -2.863 0.866  H7  8SN 26 
8SN H6  H6  H 0 1 N N N N N N -19.125 -1.307 11.975 0.078  -3.364 0.020  H6  8SN 27 
8SN H5  H5  H 0 1 N N N N N N -21.212 -2.873 11.989 -1.030 -1.847 -1.564 H5  8SN 28 
8SN H41 H41 H 0 1 N N N N N N -20.758 -0.460 13.824 -1.785 -1.735 1.385  H41 8SN 29 
8SN H32 H32 H 0 1 N N N N N N -22.647 -1.301 15.105 -3.687 -0.654 -0.682 H32 8SN 30 
8SN H31 H31 H 0 1 N N N N N N -22.761 -2.764 14.068 -3.361 -0.065 0.975  H31 8SN 31 
8SN H22 H22 H 0 1 N N N Y N N -24.296 -1.392 12.995 -2.252 0.923  -1.498 H22 8SN 32 
8SN H47 H47 H 0 1 N N N N N N -20.090 -2.265 15.410 -2.173 -3.819 0.032  H47 8SN 33 
8SN H93 H93 H 0 1 N N N N N N -20.527 -3.513 14.195 -3.701 -3.072 0.556  H93 8SN 34 
8SN H94 H94 H 0 1 N N N N N N -19.141 -2.410 13.892 -3.138 -2.864 -1.119 H94 8SN 35 
8SN HXT H3  H 0 1 N N N Y N Y -24.587 1.761  13.977 -2.838 3.276  1.255  H3  8SN 36 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8SN C22 C23 SING N N 1  
8SN C22 N   SING N N 2  
8SN C23 C8  SING N N 3  
8SN N   CA  SING N N 4  
8SN C8  CA  SING N N 5  
8SN C8  C7  SING N N 6  
8SN CA  C25 SING N N 7  
8SN C7  C6  DOUB N N 8  
8SN O7  C25 DOUB N N 9  
8SN C25 N1  SING N N 10 
8SN C6  C5  SING N N 11 
8SN N1  C5  SING N N 12 
8SN N1  C2  SING N N 13 
8SN C5  C4  SING N N 14 
8SN O   C   DOUB N N 15 
8SN C2  C   SING N N 16 
8SN C2  C3  SING N N 17 
8SN C   OXT SING N N 18 
8SN C4  C3  SING N N 19 
8SN C4  C47 SING N N 20 
8SN N   H   SING N N 21 
8SN C22 H96 SING N N 22 
8SN C22 H97 SING N N 23 
8SN C23 H23 SING N N 24 
8SN C23 H95 SING N N 25 
8SN C8  H8  SING N N 26 
8SN CA  HA  SING N N 27 
8SN C7  H7  SING N N 28 
8SN C6  H6  SING N N 29 
8SN C5  H5  SING N N 30 
8SN C4  H41 SING N N 31 
8SN C3  H32 SING N N 32 
8SN C3  H31 SING N N 33 
8SN C2  H22 SING N N 34 
8SN C47 H47 SING N N 35 
8SN C47 H93 SING N N 36 
8SN C47 H94 SING N N 37 
8SN OXT HXT SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8SN InChI            InChI                1.03  "InChI=1S/C13H18N2O3/c1-7-6-10(13(17)18)15-9(7)3-2-8-4-5-14-11(8)12(15)16/h2-3,7-11,14H,4-6H2,1H3,(H,17,18)/t7-,8+,9+,10+,11+/m1/s1" 
8SN InChIKey         InChI                1.03  PMVIXGKHVFHPBB-NMUGVGKYSA-N                                                                                                          
8SN SMILES_CANONICAL CACTVS               3.385 "C[C@@H]1C[C@H](N2[C@H]1C=C[C@H]3CCN[C@@H]3C2=O)C(O)=O"                                                                              
8SN SMILES           CACTVS               3.385 "C[CH]1C[CH](N2[CH]1C=C[CH]3CCN[CH]3C2=O)C(O)=O"                                                                                     
8SN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@@H]1C[C@H](N2[C@H]1C=C[C@H]3CCN[C@@H]3C2=O)C(=O)O"                                                                              
8SN SMILES           "OpenEye OEToolkits" 2.0.6 "CC1CC(N2C1C=CC3CCNC3C2=O)C(=O)O"                                                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           8SN 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "(3~{S},7~{R},10~{R},11~{R},13~{S})-11-methyl-2-oxidanylidene-1,4-diazatricyclo[8.3.0.0^{3,7}]tridec-8-ene-13-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8SN "Create component" 2017-03-03 RCSB 
8SN "Initial release"  2018-03-21 RCSB 
8SN "Modify backbone"  2023-11-03 PDBE 
8SN "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            8SN 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
