data_YLM
# 
_chem_comp.id                                    YLM 
_chem_comp.name                                  "(1R,2S)-2-((S)-2-((((4-fluorobenzyl)oxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H30 F N3 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-03-12 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        503.542 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YLM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7LZV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YLM C11 C1  C 0 1 N N S N N N 8.717  19.803 27.734 -3.275 0.897  0.295  C11 YLM 1  
YLM C12 C2  C 0 1 N N N N N N 7.729  19.769 26.540 -3.688 -0.062 1.412  C12 YLM 2  
YLM C13 C3  C 0 1 N N S N N N 7.359  21.127 25.959 -4.344 -1.303 0.803  C13 YLM 3  
YLM C14 C4  C 0 1 N N N N N N 6.413  20.978 24.788 -4.784 -2.257 1.890  C14 YLM 4  
YLM C16 C5  C 0 1 N N N N N N 5.362  22.537 26.210 -6.553 -2.139 0.390  C16 YLM 5  
YLM C17 C6  C 0 1 N N N N N N 6.524  21.905 26.986 -5.656 -0.921 0.079  C17 YLM 6  
YLM C27 C7  C 0 1 Y N N N N N 11.943 30.202 24.922 8.308  -0.201 1.285  C27 YLM 7  
YLM C02 C8  C 0 1 N N N N N N 10.639 24.073 25.929 2.433  -0.391 -0.936 C02 YLM 8  
YLM C04 C9  C 0 1 N N S N N N 11.822 22.153 27.023 0.012  -0.662 -0.892 C04 YLM 9  
YLM C05 C10 C 0 1 N N N N N N 12.920 21.877 28.041 -0.253 -2.140 -1.186 C05 YLM 10 
YLM C06 C11 C 0 1 N N N N N N 14.338 22.287 27.670 -1.564 -2.279 -1.962 C06 YLM 11 
YLM C07 C12 C 0 1 N N N N N N 15.344 22.079 28.844 -1.407 -1.646 -3.346 C07 YLM 12 
YLM C08 C13 C 0 1 N N N N N N 14.795 21.500 26.451 -1.911 -3.761 -2.116 C08 YLM 13 
YLM C09 C14 C 0 1 N N N N N N 10.445 21.684 27.539 -1.082 -0.122 -0.007 C09 YLM 14 
YLM C19 C15 C 0 1 N N R N N N 8.926  18.400 28.302 -2.702 2.177  0.907  C19 YLM 15 
YLM C23 C16 C 0 1 N N N N N N 11.644 25.893 24.707 4.803  -0.222 -1.158 C23 YLM 16 
YLM C24 C17 C 0 1 Y N N N N N 11.736 27.409 24.758 6.039  -0.215 -0.296 C24 YLM 17 
YLM C25 C18 C 0 1 Y N N N N N 10.921 28.249 24.000 6.534  0.980  0.192  C25 YLM 18 
YLM C26 C19 C 0 1 Y N N N N N 11.006 29.643 24.060 7.668  0.988  0.982  C26 YLM 19 
YLM C29 C20 C 0 1 Y N N N N N 12.770 29.420 25.698 7.816  -1.397 0.790  C29 YLM 20 
YLM C30 C21 C 0 1 Y N N N N N 12.646 28.031 25.603 6.682  -1.403 0.001  C30 YLM 21 
YLM F28 F1  F 0 1 N N N N N N 12.054 31.544 25.006 9.417  -0.194 2.057  F28 YLM 22 
YLM N03 N1  N 0 1 N N N N N N 11.746 23.560 26.601 1.302  -0.522 -0.213 N03 YLM 23 
YLM N10 N2  N 0 1 N N N N N N 9.993  20.403 27.296 -2.257 0.260  -0.545 N10 YLM 24 
YLM N15 N3  N 0 1 N N N N N N 5.305  21.789 24.938 -6.026 -2.706 1.637  N15 YLM 25 
YLM O01 O1  O 0 1 N N N N N N 9.683  23.405 25.578 2.373  -0.296 -2.146 O01 YLM 26 
YLM O18 O2  O 0 1 N N N N N N 6.566  20.275 23.779 -4.115 -2.573 2.851  O18 YLM 27 
YLM O20 O3  O 0 1 N N N N N N 9.740  18.543 29.485 -3.695 2.800  1.724  O20 YLM 28 
YLM O21 O4  O 0 1 N N N N N N 9.765  22.502 28.184 -0.905 -0.031 1.189  O21 YLM 29 
YLM O22 O5  O 0 1 N N N N N N 10.684 25.441 25.666 3.628  -0.366 -0.317 O22 YLM 30 
YLM H1  H1  H 0 1 N N N N N N 8.278  20.433 28.522 -4.145 1.143  -0.313 H1  YLM 31 
YLM H2  H2  H 0 1 N N N N N N 6.803  19.282 26.879 -2.806 -0.360 1.980  H2  YLM 32 
YLM H3  H3  H 0 1 N N N N N N 8.186  19.170 25.738 -4.396 0.435  2.075  H3  YLM 33 
YLM H4  H4  H 0 1 N N N N N N 8.258  21.694 25.675 -3.658 -1.796 0.114  H4  YLM 34 
YLM H5  H5  H 0 1 N N N N N N 5.556  23.604 26.024 -7.587 -1.821 0.528  H5  YLM 35 
YLM H6  H6  H 0 1 N N N N N N 4.420  22.427 26.766 -6.489 -2.871 -0.415 H6  YLM 36 
YLM H7  H7  H 0 1 N N N N N N 6.139  21.223 27.759 -6.080 -0.007 0.496  H7  YLM 37 
YLM H8  H8  H 0 1 N N N N N N 7.136  22.687 27.459 -5.494 -0.819 -0.994 H8  YLM 38 
YLM H9  H9  H 0 1 N N N N N N 12.050 21.550 26.132 0.031  -0.104 -1.828 H9  YLM 39 
YLM H10 H10 H 0 1 N N N N N N 12.654 22.410 28.966 0.566  -2.545 -1.780 H10 YLM 40 
YLM H11 H11 H 0 1 N N N N N N 12.929 20.794 28.231 -0.327 -2.690 -0.247 H11 YLM 41 
YLM H12 H12 H 0 1 N N N N N N 14.334 23.356 27.412 -2.363 -1.773 -1.419 H12 YLM 42 
YLM H13 H13 H 0 1 N N N N N N 15.007 22.651 29.722 -0.653 -2.191 -3.912 H13 YLM 43 
YLM H14 H14 H 0 1 N N N N N N 15.393 21.010 29.100 -2.359 -1.688 -3.875 H14 YLM 44 
YLM H15 H15 H 0 1 N N N N N N 16.341 22.429 28.539 -1.098 -0.606 -3.236 H15 YLM 45 
YLM H16 H16 H 0 1 N N N N N N 15.820 21.798 26.185 -2.023 -4.213 -1.130 H16 YLM 46 
YLM H17 H17 H 0 1 N N N N N N 14.774 20.424 26.680 -2.845 -3.860 -2.669 H17 YLM 47 
YLM H18 H18 H 0 1 N N N N N N 14.122 21.708 25.607 -1.112 -4.267 -2.658 H18 YLM 48 
YLM S1  S1  S 0 1 N Y N N N N 9.408  17.769 27.585 -2.210 3.314  -0.418 S1  YLM 49 
YLM H20 H20 H 0 1 N N N N N N 7.937  18.041 28.621 -1.832 1.931  1.516  H20 YLM 50 
YLM H21 H21 H 0 1 N N N N N N 11.333 25.578 23.700 4.741  0.714  -1.712 H21 YLM 51 
YLM H22 H22 H 0 1 N N N N N N 12.627 25.458 24.939 4.853  -1.056 -1.858 H22 YLM 52 
YLM H23 H23 H 0 1 N N N N N N 10.193 27.804 23.338 6.034  1.908  -0.045 H23 YLM 53 
YLM H24 H24 H 0 1 N N N N N N 10.364 30.266 23.456 8.053  1.922  1.364  H24 YLM 54 
YLM H25 H25 H 0 1 N N N N N N 13.495 29.868 26.362 8.318  -2.325 1.022  H25 YLM 55 
YLM H26 H26 H 0 1 N N N N N N 13.287 27.413 26.215 6.295  -2.336 -0.381 H26 YLM 56 
YLM H27 H27 H 0 1 N N N N N N 12.514 24.168 26.803 1.344  -0.525 0.756  H27 YLM 57 
YLM H28 H28 H 0 1 N N N N N N 10.599 19.814 26.762 -2.430 0.113  -1.488 H28 YLM 58 
YLM H29 H29 H 0 1 N N N N N N 4.562  21.860 24.273 -6.511 -3.324 2.205  H29 YLM 59 
YLM H30 H30 H 0 1 N N N N N N 9.893  17.688 29.870 -4.006 2.248  2.455  H30 YLM 60 
YLM O1  O6  O 0 1 N Y N N N N ?      ?      ?      -3.266 3.476  -1.354 O1  YLM 61 
YLM O2  O7  O 0 1 N Y N N N N ?      ?      ?      -1.527 4.439  0.118  O2  YLM 62 
YLM O3  O8  O 0 1 N Y N N N N ?      ?      ?      -1.138 2.557  -1.189 O3  YLM 63 
YLM H19 H19 H 0 1 N Y N N N N ?      ?      ?      -0.773 3.046  -1.939 H19 YLM 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YLM O18 C14 DOUB N N 1  
YLM C25 C26 DOUB Y N 2  
YLM C25 C24 SING Y N 3  
YLM C26 C27 SING Y N 4  
YLM C23 C24 SING N N 5  
YLM C23 O22 SING N N 6  
YLM C24 C30 DOUB Y N 7  
YLM C14 N15 SING N N 8  
YLM C14 C13 SING N N 9  
YLM C27 F28 SING N N 10 
YLM C27 C29 DOUB Y N 11 
YLM N15 C16 SING N N 12 
YLM O01 C02 DOUB N N 13 
YLM C30 C29 SING Y N 14 
YLM O22 C02 SING N N 15 
YLM C02 N03 SING N N 16 
YLM C13 C12 SING N N 17 
YLM C13 C17 SING N N 18 
YLM C16 C17 SING N N 19 
YLM C08 C06 SING N N 20 
YLM C12 C11 SING N N 21 
YLM N03 C04 SING N N 22 
YLM C04 C09 SING N N 23 
YLM C04 C05 SING N N 24 
YLM N10 C09 SING N N 25 
YLM N10 C11 SING N N 26 
YLM C09 O21 DOUB N N 27 
YLM C06 C05 SING N N 28 
YLM C06 C07 SING N N 29 
YLM C11 C19 SING N N 30 
YLM C19 O20 SING N N 31 
YLM C11 H1  SING N N 32 
YLM C12 H2  SING N N 33 
YLM C12 H3  SING N N 34 
YLM C13 H4  SING N N 35 
YLM C16 H5  SING N N 36 
YLM C16 H6  SING N N 37 
YLM C17 H7  SING N N 38 
YLM C17 H8  SING N N 39 
YLM C04 H9  SING N N 40 
YLM C05 H10 SING N N 41 
YLM C05 H11 SING N N 42 
YLM C06 H12 SING N N 43 
YLM C07 H13 SING N N 44 
YLM C07 H14 SING N N 45 
YLM C07 H15 SING N N 46 
YLM C08 H16 SING N N 47 
YLM C08 H17 SING N N 48 
YLM C08 H18 SING N N 49 
YLM C19 S1  SING N N 50 
YLM C19 H20 SING N N 51 
YLM C23 H21 SING N N 52 
YLM C23 H22 SING N N 53 
YLM C25 H23 SING N N 54 
YLM C26 H24 SING N N 55 
YLM C29 H25 SING N N 56 
YLM C30 H26 SING N N 57 
YLM N03 H27 SING N N 58 
YLM N10 H28 SING N N 59 
YLM N15 H29 SING N N 60 
YLM O20 H30 SING N N 61 
YLM S1  O1  DOUB N N 62 
YLM S1  O2  DOUB N N 63 
YLM S1  O3  SING N N 64 
YLM O3  H19 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YLM SMILES           ACDLabs              12.01 "CC(C)CC(NC(=O)OCc1ccc(F)cc1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O"                                                                                                                                                                 
YLM InChI            InChI                1.03  "InChI=1S/C21H30FN3O8S/c1-12(2)9-16(25-21(29)33-11-13-3-5-15(22)6-4-13)19(27)24-17(20(28)34(30,31)32)10-14-7-8-23-18(14)26/h3-6,12,14,16-17,20,28H,7-11H2,1-2H3,(H,23,26)(H,24,27)(H,25,29)(H,30,31,32)/t14-,16-,17-,20+/m0/s1" 
YLM InChIKey         InChI                1.03  SXLHHGJXSMBQOQ-JWWIWJDOSA-N                                                                                                                                                                                                     
YLM SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)OCc1ccc(F)cc1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@H](O)[S](O)(=O)=O"                                                                                                                                             
YLM SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)OCc1ccc(F)cc1)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O"                                                                                                                                                   
YLM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2ccc(cc2)F"                                                                                                                                                  
YLM SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2ccc(cc2)F"                                                                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YLM "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2S)-2-[(N-{[(4-fluorophenyl)methoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"                                    
YLM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-2-[(4-fluorophenyl)methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YLM "Create component" 2021-03-12 RCSB 
YLM "Initial release"  2021-03-24 RCSB 
YLM "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            YLM 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C19 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
