data_VJM
#

_chem_comp.id                                   VJM
_chem_comp.name                                 "4-(4-{1-[(R)-amino(hydroxy)methyl-lambda~4~-sulfanyl]cyclopropyl}-6-[(3R)-3-methylmorpholin-4-yl]pyrimidin-2-yl)-1H-pyrrolo[2,3-b]pyridine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H26 N6 O2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-08-17
_chem_comp.pdbx_modified_date                   2021-08-20
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       414.524
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VJM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7JSP
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VJM  C01   C1   C  0  1  N  N  N  16.843  20.777  66.835   1.949   2.606   0.819  C01   VJM   1  
VJM  C02   C2   C  0  1  N  N  R  17.215  20.655  65.325   1.297   2.942  -0.523  C02   VJM   2  
VJM  C03   C3   C  0  1  N  N  N  16.044  21.208  64.474   1.334   4.457  -0.745  C03   VJM   3  
VJM  C05   C4   C  0  1  N  N  N  15.178  18.989  64.058  -0.807   4.682   0.304  C05   VJM   4  
VJM  C06   C5   C  0  1  N  N  N  16.465  18.385  64.678  -0.867   3.168   0.536  C06   VJM   5  
VJM  C08   C6   C  0  1  Y  N  N  18.791  18.761  65.379  -0.174   1.111  -0.373  C08   VJM   6  
VJM  C10   C7   C  0  1  Y  N  N  21.026  19.161  66.226   0.866  -0.932  -0.119  C10   VJM   7  
VJM  C12   C8   C  0  1  Y  N  N  20.314  16.931  65.896  -1.439  -0.907  -0.184  C12   VJM   8  
VJM  C13   C9   C  0  1  Y  N  N  19.061  17.376  65.428  -1.413   0.467  -0.336  C13   VJM   9  
VJM  C14   C10  C  0  1  N  N  N  20.648  15.510  65.988  -2.753  -1.644  -0.138  C14   VJM  10  
VJM  C15   C11  C  0  1  N  N  N  19.659  14.415  65.582  -2.840  -2.979  -0.881  C15   VJM  11  
VJM  C16   C12  C  0  1  N  N  N  20.912  14.684  64.735  -2.800  -2.955   0.649  C16   VJM  12  
VJM  C20   C13  C  0  1  N  N  N  23.443  15.561  67.006  -5.711   0.441  -0.093  C20   VJM  13  
VJM  C21   C14  C  0  1  Y  N  N  22.038  20.030  66.698   2.121  -1.710   0.001  C21   VJM  14  
VJM  C22   C15  C  0  1  Y  N  N  22.170  21.357  66.314   3.376  -1.076  -0.029  C22   VJM  15  
VJM  C23   C16  C  0  1  Y  N  N  21.479  22.128  65.387   3.816   0.311  -0.163  C23   VJM  16  
VJM  C24   C17  C  0  1  Y  N  N  22.079  23.390  65.403   5.160   0.299  -0.122  C24   VJM  17  
VJM  C26   C18  C  0  1  Y  N  N  23.178  22.168  66.852   4.545  -1.852   0.088  C26   VJM  18  
VJM  C28   C19  C  0  1  Y  N  N  23.944  20.431  68.222   3.292  -3.786   0.262  C28   VJM  19  
VJM  C29   C20  C  0  1  Y  N  N  22.945  19.581  67.700   2.097  -3.097   0.153  C29   VJM  20  
VJM  N07   N1   N  0  1  N  N  N  17.578  19.306  64.945  -0.101   2.487  -0.517  N07   VJM  21  
VJM  N09   N2   N  0  1  Y  N  N  19.808  19.587  65.782   0.933   0.385  -0.263  N09   VJM  22  
VJM  N11   N3   N  0  1  Y  N  N  21.227  17.829  66.264  -0.297  -1.569  -0.080  N11   VJM  23  
VJM  N18   N4   N  0  1  N  N  N  21.681  13.516  67.643  -3.863  -0.113   1.524  N18   VJM  24  
VJM  N25   N5   N  0  1  Y  N  N  23.111  23.364  66.281   5.610  -0.984   0.028  N25   VJM  25  
VJM  N27   N6   N  0  1  Y  N  N  24.048  21.713  67.790   4.453  -3.167   0.225  N27   VJM  26  
VJM  O04   O1   O  0  1  N  N  N  14.912  20.330  64.479   0.560   5.101   0.270  O04   VJM  27  
VJM  O19   O2   O  0  1  N  N  N  21.285  16.079  68.641  -5.178  -1.938  -0.390  O19   VJM  28  
VJM  S17   S1   S  0  1  N  N  R  21.712  15.139  67.449  -4.232  -0.602  -0.116  S17   VJM  29  
VJM  H011  H1   H  0  0  N  N  N  17.668  20.387  67.449   1.407   3.105   1.622  H011  VJM  30  
VJM  H013  H2   H  0  0  N  N  N  16.668  21.834  67.085   1.921   1.528   0.977  H013  VJM  31  
VJM  H012  H3   H  0  0  N  N  N  15.930  20.197  67.036   2.985   2.945   0.815  H012  VJM  32  
VJM  H021  H4   H  0  0  N  N  N  18.081  21.311  65.152   1.839   2.444  -1.327  H021  VJM  33  
VJM  H031  H5   H  0  0  N  N  N  16.389  21.336  63.437   2.365   4.807  -0.693  H031  VJM  34  
VJM  H032  H6   H  0  0  N  N  N  15.739  22.183  64.882   0.918   4.692  -1.724  H032  VJM  35  
VJM  H052  H7   H  0  0  N  N  N  14.324  18.358  64.347  -1.286   4.924  -0.645  H052  VJM  36  
VJM  H051  H8   H  0  0  N  N  N  15.284  18.983  62.963  -1.325   5.195   1.115  H051  VJM  37  
VJM  H062  H9   H  0  0  N  N  N  16.184  17.919  65.634  -0.436   2.932   1.509  H062  VJM  38  
VJM  H061  H10  H  0  0  N  N  N  16.834  17.612  63.988  -1.904   2.836   0.506  H061  VJM  39  
VJM  H131  H11  H  0  0  N  N  N  18.314  16.664  65.110  -2.331   1.030  -0.423  H131  VJM  40  
VJM  H152  H12  H  0  0  N  N  N  18.665  14.686  65.197  -3.789  -3.230  -1.355  H152  VJM  41  
VJM  H151  H13  H  0  0  N  N  N  19.583  13.493  66.177  -1.948  -3.324  -1.403  H151  VJM  42  
VJM  H161  H14  H  0  0  N  N  N  21.734  13.953  64.721  -1.881  -3.285   1.134  H161  VJM  43  
VJM  H162  H15  H  0  0  N  N  N  20.815  15.146  63.741  -3.722  -3.190   1.181  H162  VJM  44  
VJM  H202  H16  H  0  0  N  N  N  24.103  15.350  67.860  -6.225   0.363  -1.051  H202  VJM  45  
VJM  H201  H17  H  0  0  N  N  N  23.758  14.957  66.142  -6.377   0.110   0.704  H201  VJM  46  
VJM  H203  H18  H  0  0  N  N  N  23.506  16.629  66.750  -5.423   1.477   0.082  H203  VJM  47  
VJM  H231  H19  H  0  0  N  N  N  20.645  21.815  64.776   3.183   1.179  -0.275  H231  VJM  48  
VJM  H241  H20  H  0  0  N  N  N  21.772  24.242  64.815   5.790   1.173  -0.197  H241  VJM  49  
VJM  H281  H21  H  0  0  N  N  N  24.629  20.059  68.969   3.271  -4.859   0.380  H281  VJM  50  
VJM  H291  H22  H  0  0  N  N  N  22.867  18.569  68.068   1.156  -3.626   0.186  H291  VJM  51  
VJM  H1    H23  H  0  1  N  N  N  22.247  13.263  68.428  -3.635  -0.912   2.097  H1    VJM  52  
VJM  H181  H24  H  0  0  N  N  N  20.740  13.217  67.800  -3.117   0.567   1.539  H181  VJM  53  
VJM  H251  H25  H  0  0  N  N  N  23.727  24.129  66.470   6.543  -1.244   0.083  H251  VJM  54  
VJM  H2    H26  H  0  1  N  N  N  21.827  15.896  69.399  -5.326  -2.129  -1.327  H2    VJM  55  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VJM  C05  O04   SING  N  N   1  
VJM  C05  C06   SING  N  N   2  
VJM  C03  O04   SING  N  N   3  
VJM  C03  C02   SING  N  N   4  
VJM  C06  N07   SING  N  N   5  
VJM  C16  C15   SING  N  N   6  
VJM  C16  C14   SING  N  N   7  
VJM  N07  C02   SING  N  N   8  
VJM  N07  C08   SING  N  N   9  
VJM  C02  C01   SING  N  N  10  
VJM  C08  C13   DOUB  Y  N  11  
VJM  C08  N09   SING  Y  N  12  
VJM  C23  C24   DOUB  Y  N  13  
VJM  C23  C22   SING  Y  N  14  
VJM  C24  N25   SING  Y  N  15  
VJM  C13  C12   SING  Y  N  16  
VJM  C15  C14   SING  N  N  17  
VJM  N09  C10   DOUB  Y  N  18  
VJM  C12  C14   SING  N  N  19  
VJM  C12  N11   DOUB  Y  N  20  
VJM  C14  S17   SING  N  N  21  
VJM  C10  N11   SING  Y  N  22  
VJM  C10  C21   SING  N  N  23  
VJM  N25  C26   SING  Y  N  24  
VJM  C22  C21   DOUB  Y  N  25  
VJM  C22  C26   SING  Y  N  26  
VJM  C21  C29   SING  Y  N  27  
VJM  C26  N27   DOUB  Y  N  28  
VJM  C20  S17   SING  N  N  29  
VJM  S17  N18   SING  N  N  30  
VJM  S17  O19   SING  N  N  31  
VJM  C29  C28   DOUB  Y  N  32  
VJM  N27  C28   SING  Y  N  33  
VJM  C01  H011  SING  N  N  34  
VJM  C01  H013  SING  N  N  35  
VJM  C01  H012  SING  N  N  36  
VJM  C02  H021  SING  N  N  37  
VJM  C03  H031  SING  N  N  38  
VJM  C03  H032  SING  N  N  39  
VJM  C05  H052  SING  N  N  40  
VJM  C05  H051  SING  N  N  41  
VJM  C06  H062  SING  N  N  42  
VJM  C06  H061  SING  N  N  43  
VJM  C13  H131  SING  N  N  44  
VJM  C15  H152  SING  N  N  45  
VJM  C15  H151  SING  N  N  46  
VJM  C16  H161  SING  N  N  47  
VJM  C16  H162  SING  N  N  48  
VJM  C20  H202  SING  N  N  49  
VJM  C20  H201  SING  N  N  50  
VJM  C20  H203  SING  N  N  51  
VJM  C23  H231  SING  N  N  52  
VJM  C24  H241  SING  N  N  53  
VJM  C28  H281  SING  N  N  54  
VJM  C29  H291  SING  N  N  55  
VJM  N18  H1    SING  N  N  56  
VJM  N18  H181  SING  N  N  57  
VJM  N25  H251  SING  N  N  58  
VJM  O19  H2    SING  N  N  59  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VJM  SMILES            ACDLabs               12.01  "CC1COCCN1c5cc(C2(S(C)(N)O)CC2)nc(c3ccnc4c3ccn4)n5"  
VJM  InChI             InChI                 1.03   "InChI=1S/C20H26N6O2S/c1-13-12-28-10-9-26(13)17-11-16(20(5-6-20)29(2,21)27)24-19(25-17)15-4-8-23-18-14(15)3-7-22-18/h3-4,7-8,11,13,27H,5-6,9-10,12,21H2,1-2H3,(H,22,23)/t13-/m1/s1"  
VJM  InChIKey          InChI                 1.03   UUSXGRTVICHEJW-CYBMUJFWSA-N  
VJM  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H]1COCCN1c2cc(nc(n2)c3ccnc4[nH]ccc34)C5(CC5)[S@](C)(N)O"  
VJM  SMILES            CACTVS                3.385  "C[CH]1COCCN1c2cc(nc(n2)c3ccnc4[nH]ccc34)C5(CC5)[S](C)(N)O"  
VJM  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@H]1COCCN1c2cc(nc(n2)c3ccnc4c3cc[nH]4)C5(CC5)[S@](C)(N)O"  
VJM  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1COCCN1c2cc(nc(n2)c3ccnc4c3cc[nH]4)C5(CC5)S(C)(N)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VJM  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-(4-{1-[(R)-amino(hydroxy)methyl-lambda~4~-sulfanyl]cyclopropyl}-6-[(3R)-3-methylmorpholin-4-yl]pyrimidin-2-yl)-1H-pyrrolo[2,3-b]pyridine"  
VJM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(3~{R})-4-[6-[1-(azanyl-methyl-oxidanyl-$l^{4}-sulfanyl)cyclopropyl]-2-(1~{H}-pyrrolo[2,3-b]pyridin-4-yl)pyrimidin-4-yl]-3-methyl-morpholine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VJM  "Create component"  2020-08-17  RCSB  
VJM  "Initial release"   2021-08-25  RCSB  
##
