data_VHM
# 
_chem_comp.id                                    VHM 
_chem_comp.name                                  "N-[(benzyloxy)carbonyl]-L-valyl-3-cyclohexyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-alaninamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H44 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-08-12 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        544.683 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VHM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7JQ2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VHM C1  C1  C 0 1 Y N N N N N 44.178 11.323 -17.296 9.484  -1.404 -1.120 C1  VHM 1  
VHM C10 C2  C 0 1 N N N N N N 42.307 1.090  -17.514 -0.454 -3.036 1.916  C10 VHM 2  
VHM C11 C3  C 0 1 N N S N N N 42.804 4.804  -14.290 1.593  1.661  0.359  C11 VHM 3  
VHM C12 C4  C 0 1 N N N N N N 42.078 3.503  -14.299 0.370  0.842  0.036  C12 VHM 4  
VHM C13 C5  C 0 1 N N N N N N 41.837 0.754  -18.925 0.764  -3.866 1.506  C13 VHM 5  
VHM C14 C6  C 0 1 N N S N N N 42.255 1.124  -14.656 -1.942 0.200  0.458  C14 VHM 6  
VHM C15 C7  C 0 1 N N N N N N 42.100 0.703  -13.228 -3.207 0.953  0.779  C15 VHM 7  
VHM C16 C8  C 0 1 N N N N N N 42.517 -0.494 -19.483 0.559  -4.408 0.090  C16 VHM 8  
VHM C17 C9  C 0 1 N N S N N N 40.687 -0.207 -11.499 -5.634 1.083  0.949  C17 VHM 9  
VHM C18 C10 C 0 1 N N N N N N 43.939 -0.584 -18.971 0.387  -3.239 -0.883 C18 VHM 10 
VHM C19 C11 C 0 1 N N N N N N 39.591 0.620  -10.830 -6.799 0.482  0.160  C19 VHM 11 
VHM C2  C12 C 0 1 Y N N N N N 42.913 11.271 -17.854 9.173  -0.149 -1.609 C2  VHM 12 
VHM C20 C13 C 0 1 N N S N N N 40.026 2.085  -10.743 -6.568 0.700  -1.337 C20 VHM 13 
VHM C21 C14 C 0 1 N N N N N N 41.122 2.275  -9.703  -7.749 0.128  -2.156 C21 VHM 14 
VHM C22 C15 C 0 1 N N N N N N 40.723 3.519  -8.910  -7.240 -1.291 -2.494 C22 VHM 15 
VHM C23 C16 C 0 1 N N N N N N 43.878 -0.877 -17.477 -0.830 -2.408 -0.473 C23 VHM 16 
VHM C24 C17 C 0 1 N N N N N N 38.931 2.984  -10.260 -5.370 -0.095 -1.808 C24 VHM 17 
VHM C25 C18 C 0 1 N N N N N N 40.415 -1.714 -11.561 -5.924 0.977  2.447  C25 VHM 18 
VHM C3  C19 C 0 1 Y N N N N N 42.286 10.058 -18.109 8.155  0.585  -1.031 C3  VHM 19 
VHM C30 C20 C 0 1 N N N N N N 42.855 5.323  -12.871 1.486  3.028  -0.319 C30 VHM 20 
VHM C31 C21 C 0 1 N N N N N N 43.218 6.800  -12.921 2.659  3.908  0.118  C31 VHM 21 
VHM C32 C22 C 0 1 N N N N N N 43.797 4.496  -12.007 1.521  2.848  -1.838 C32 VHM 22 
VHM C34 C23 C 0 1 N N N N N N 43.242 0.202  -15.357 -1.843 -1.037 1.354  C34 VHM 23 
VHM C4  C24 C 0 1 Y N N N N N 42.932 8.868  -17.824 7.447  0.065  0.036  C4  VHM 24 
VHM C5  C25 C 0 1 Y N N N N N 44.208 8.902  -17.276 7.757  -1.190 0.525  C5  VHM 25 
VHM C6  C26 C 0 1 Y N N N N N 44.819 10.127 -17.024 8.776  -1.925 -0.052 C6  VHM 26 
VHM C7  C27 C 0 1 N N N N N N 42.232 7.567  -18.141 6.338  0.866  0.667  C7  VHM 27 
VHM C8  C28 C 0 1 N N N N N N 42.750 -0.155 -16.752 -0.625 -1.867 0.943  C8  VHM 28 
VHM C9  C29 C 0 1 N N N N N N 42.302 5.910  -16.356 3.985  1.202  0.448  C9  VHM 29 
VHM N10 N1  N 0 1 N N N N N N 42.079 5.774  -15.065 2.789  0.967  -0.127 N10 VHM 30 
VHM N13 N2  N 0 1 N N N N N N 42.787 2.468  -14.717 -0.784 1.067  0.693  N13 VHM 31 
VHM N16 N3  N 0 1 N N N N N N 40.897 0.276  -12.855 -4.404 0.351  0.637  N16 VHM 32 
VHM N23 N4  N 0 1 N N N N N N 39.365 3.812  -9.315  -5.775 -1.200 -2.457 N23 VHM 33 
VHM O26 O1  O 0 1 N N N N N N 37.798 2.939  -10.691 -4.213 0.220  -1.628 O26 VHM 34 
VHM O27 O2  O 0 1 N N N N N N 40.196 -2.297 -10.275 -6.199 -0.385 2.784  O27 VHM 35 
VHM O29 O3  O 0 1 N N N N N N 43.065 5.194  -16.989 4.072  1.990  1.369  O29 VHM 36 
VHM O33 O4  O 0 1 N N N N N N 40.918 3.433  -13.938 0.425  -0.019 -0.817 O33 VHM 37 
VHM O38 O5  O 0 1 N N N N N N 43.046 0.775  -12.459 -3.148 2.101  1.167  O38 VHM 38 
VHM O8  O6  O 0 1 N N N N N N 41.592 6.979  -17.025 5.083  0.564  0.001  O8  VHM 39 
VHM H1  H1  H 0 1 N N N N N N 44.651 12.269 -17.079 10.276 -1.980 -1.574 H1  VHM 40 
VHM H2  H2  H 0 1 N N N N N N 43.154 1.788  -17.578 -1.346 -3.662 1.892  H2  VHM 41 
VHM H3  H3  H 0 1 N N N N N N 41.480 1.566  -16.967 -0.308 -2.650 2.925  H3  VHM 42 
VHM H4  H4  H 0 1 N N N N N N 43.825 4.673  -14.678 1.665  1.796  1.439  H4  VHM 43 
VHM H5  H5  H 0 1 N N N N N N 42.063 1.605  -19.585 1.656  -3.240 1.530  H5  VHM 44 
VHM H6  H6  H 0 1 N N N N N N 40.750 0.585  -18.905 0.886  -4.699 2.199  H6  VHM 45 
VHM H7  H7  H 0 1 N N N N N N 41.282 1.073  -15.166 -1.958 -0.109 -0.587 H7  VHM 46 
VHM H8  H8  H 0 1 N N N N N N 42.528 -0.442 -20.582 1.426  -4.999 -0.202 H8  VHM 47 
VHM H9  H9  H 0 1 N N N N N N 41.958 -1.386 -19.164 -0.333 -5.034 0.066  H9  VHM 48 
VHM H10 H10 H 0 1 N N N N N N 41.614 -0.059 -10.926 -5.512 2.131  0.676  H10 VHM 49 
VHM H11 H11 H 0 1 N N N N N N 44.473 -1.394 -19.490 1.279  -2.613 -0.859 H11 VHM 50 
VHM H12 H12 H 0 1 N N N N N N 44.460 0.369  -19.145 0.241  -3.625 -1.892 H12 VHM 51 
VHM H13 H13 H 0 1 N N N N N N 38.667 0.548  -11.422 -6.865 -0.586 0.366  H13 VHM 52 
VHM H14 H14 H 0 1 N N N N N N 39.408 0.233  -9.817  -7.729 0.968  0.458  H14 VHM 53 
VHM H15 H15 H 0 1 N N N N N N 42.403 12.192 -18.096 9.726  0.257  -2.443 H15 VHM 54 
VHM H16 H16 H 0 1 N N N N N N 40.385 2.422  -11.726 -6.431 1.760  -1.551 H16 VHM 55 
VHM H17 H17 H 0 1 N N N N N N 41.179 1.399  -9.040  -8.656 0.083  -1.553 H17 VHM 56 
VHM H18 H18 H 0 1 N N N N N N 42.095 2.428  -10.193 -7.912 0.710  -3.062 H18 VHM 57 
VHM H19 H19 H 0 1 N N N N N N 40.768 3.318  -7.830  -7.592 -2.005 -1.750 H19 VHM 58 
VHM H20 H20 H 0 1 N N N N N N 41.388 4.361  -9.154  -7.576 -1.585 -3.488 H20 VHM 59 
VHM H21 H21 H 0 1 N N N N N N 43.739 -1.960 -17.342 -0.952 -1.576 -1.166 H21 VHM 60 
VHM H22 H22 H 0 1 N N N N N N 44.833 -0.570 -17.025 -1.722 -3.035 -0.497 H22 VHM 61 
VHM H23 H23 H 0 1 N N N N N N 39.521 -1.883 -12.179 -5.058 1.323  3.011  H23 VHM 62 
VHM H24 H24 H 0 1 N N N N N N 41.281 -2.207 -12.026 -6.788 1.593  2.695  H24 VHM 63 
VHM H25 H25 H 0 1 N N N N N N 41.292 10.044 -18.531 7.913  1.566  -1.413 H25 VHM 64 
VHM H26 H26 H 0 1 N N N N N N 41.845 5.239  -12.443 0.549  3.504  -0.031 H26 VHM 65 
VHM H27 H27 H 0 1 N N N N N N 43.262 7.202  -11.898 3.590  3.490  -0.267 H27 VHM 66 
VHM H28 H28 H 0 1 N N N N N N 44.199 6.920  -13.404 2.524  4.915  -0.276 H28 VHM 67 
VHM H29 H29 H 0 1 N N N N N N 42.456 7.345  -13.497 2.700  3.945  1.206  H29 VHM 68 
VHM H30 H30 H 0 1 N N N N N N 43.809 4.901  -10.985 0.685  2.221  -2.149 H30 VHM 69 
VHM H31 H31 H 0 1 N N N N N N 43.451 3.452  -11.983 1.445  3.822  -2.321 H31 VHM 70 
VHM H32 H32 H 0 1 N N N N N N 44.812 4.537  -12.429 2.459  2.372  -2.126 H32 VHM 71 
VHM H33 H33 H 0 1 N N N N N N 43.356 -0.720 -14.768 -1.737 -0.725 2.393  H33 VHM 72 
VHM H34 H34 H 0 1 N N N N N N 44.215 0.709  -15.436 -2.746 -1.638 1.244  H34 VHM 73 
VHM H35 H35 H 0 1 N N N N N N 44.724 7.981  -17.046 7.204  -1.597 1.359  H35 VHM 74 
VHM H36 H36 H 0 1 N N N N N N 45.815 10.145 -16.607 9.015  -2.907 0.327  H36 VHM 75 
VHM H37 H37 H 0 1 N N N N N N 41.474 7.760  -18.914 6.259  0.609  1.723  H37 VHM 76 
VHM H38 H38 H 0 1 N N N N N N 42.978 6.857  -18.528 6.555  1.930  0.567  H38 VHM 77 
VHM H39 H39 H 0 1 N N N N N N 41.893 -0.838 -16.662 0.267  -1.241 0.967  H39 VHM 78 
VHM H40 H40 H 0 1 N N N N N N 41.397 6.353  -14.618 2.719  0.338  -0.862 H40 VHM 79 
VHM H41 H41 H 0 1 N N N N N N 43.706 2.617  -15.081 -0.849 1.802  1.322  H41 VHM 80 
VHM H42 H42 H 0 1 N N N N N N 40.138 0.287  -13.506 -4.452 -0.567 0.327  H42 VHM 81 
VHM H43 H43 H 0 1 N N N N N N 38.816 4.553  -8.928  -5.176 -1.854 -2.850 H43 VHM 82 
VHM H44 H44 H 0 1 N N N N N N 40.033 -3.228 -10.372 -6.392 -0.527 3.721  H44 VHM 83 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VHM C16 C18 SING N N 1  
VHM C16 C13 SING N N 2  
VHM C18 C23 SING N N 3  
VHM C13 C10 SING N N 4  
VHM C7  C4  SING N N 5  
VHM C7  O8  SING N N 6  
VHM C3  C2  DOUB Y N 7  
VHM C3  C4  SING Y N 8  
VHM C2  C1  SING Y N 9  
VHM C4  C5  DOUB Y N 10 
VHM C10 C8  SING N N 11 
VHM C23 C8  SING N N 12 
VHM C1  C6  DOUB Y N 13 
VHM C5  C6  SING Y N 14 
VHM O8  C9  SING N N 15 
VHM O29 C9  DOUB N N 16 
VHM C8  C34 SING N N 17 
VHM C9  N10 SING N N 18 
VHM C34 C14 SING N N 19 
VHM N10 C11 SING N N 20 
VHM N13 C14 SING N N 21 
VHM N13 C12 SING N N 22 
VHM C14 C15 SING N N 23 
VHM C12 C11 SING N N 24 
VHM C12 O33 DOUB N N 25 
VHM C11 C30 SING N N 26 
VHM C15 N16 SING N N 27 
VHM C15 O38 DOUB N N 28 
VHM C31 C30 SING N N 29 
VHM C30 C32 SING N N 30 
VHM N16 C17 SING N N 31 
VHM C25 C17 SING N N 32 
VHM C25 O27 SING N N 33 
VHM C17 C19 SING N N 34 
VHM C19 C20 SING N N 35 
VHM C20 C24 SING N N 36 
VHM C20 C21 SING N N 37 
VHM O26 C24 DOUB N N 38 
VHM C24 N23 SING N N 39 
VHM C21 C22 SING N N 40 
VHM N23 C22 SING N N 41 
VHM C1  H1  SING N N 42 
VHM C10 H2  SING N N 43 
VHM C10 H3  SING N N 44 
VHM C11 H4  SING N N 45 
VHM C13 H5  SING N N 46 
VHM C13 H6  SING N N 47 
VHM C14 H7  SING N N 48 
VHM C16 H8  SING N N 49 
VHM C16 H9  SING N N 50 
VHM C17 H10 SING N N 51 
VHM C18 H11 SING N N 52 
VHM C18 H12 SING N N 53 
VHM C19 H13 SING N N 54 
VHM C19 H14 SING N N 55 
VHM C2  H15 SING N N 56 
VHM C20 H16 SING N N 57 
VHM C21 H17 SING N N 58 
VHM C21 H18 SING N N 59 
VHM C22 H19 SING N N 60 
VHM C22 H20 SING N N 61 
VHM C23 H21 SING N N 62 
VHM C23 H22 SING N N 63 
VHM C25 H23 SING N N 64 
VHM C25 H24 SING N N 65 
VHM C3  H25 SING N N 66 
VHM C30 H26 SING N N 67 
VHM C31 H27 SING N N 68 
VHM C31 H28 SING N N 69 
VHM C31 H29 SING N N 70 
VHM C32 H30 SING N N 71 
VHM C32 H31 SING N N 72 
VHM C32 H32 SING N N 73 
VHM C34 H33 SING N N 74 
VHM C34 H34 SING N N 75 
VHM C5  H35 SING N N 76 
VHM C6  H36 SING N N 77 
VHM C7  H37 SING N N 78 
VHM C7  H38 SING N N 79 
VHM C8  H39 SING N N 80 
VHM N10 H40 SING N N 81 
VHM N13 H41 SING N N 82 
VHM N16 H42 SING N N 83 
VHM N23 H43 SING N N 84 
VHM O27 H44 SING N N 85 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VHM SMILES           ACDLabs              12.01 "c1ccc(cc1)COC(NC(C(C)C)C(=O)NC(C(NC(CC2C(NCC2)=O)CO)=O)CC3CCCCC3)=O"                                                                                                                                                                                         
VHM InChI            InChI                1.03  "InChI=1S/C29H44N4O6/c1-19(2)25(33-29(38)39-18-21-11-7-4-8-12-21)28(37)32-24(15-20-9-5-3-6-10-20)27(36)31-23(17-34)16-22-13-14-30-26(22)35/h4,7-8,11-12,19-20,22-25,34H,3,5-6,9-10,13-18H2,1-2H3,(H,30,35)(H,31,36)(H,32,37)(H,33,38)/t22-,23-,24-,25-/m0/s1" 
VHM InChIKey         InChI                1.03  LMWONCCZCSKLCL-QORCZRPOSA-N                                                                                                                                                                                                                                   
VHM SMILES_CANONICAL CACTVS               3.385 "CC(C)[C@H](NC(=O)OCc1ccccc1)C(=O)N[C@@H](CC2CCCCC2)C(=O)N[C@H](CO)C[C@@H]3CCNC3=O"                                                                                                                                                                           
VHM SMILES           CACTVS               3.385 "CC(C)[CH](NC(=O)OCc1ccccc1)C(=O)N[CH](CC2CCCCC2)C(=O)N[CH](CO)C[CH]3CCNC3=O"                                                                                                                                                                                 
VHM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](C(=O)N[C@@H](CC1CCCCC1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)CO)NC(=O)OCc3ccccc3"                                                                                                                                                                         
VHM SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)C(C(=O)NC(CC1CCCCC1)C(=O)NC(CC2CCNC2=O)CO)NC(=O)OCc3ccccc3"                                                                                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VHM "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(benzyloxy)carbonyl]-L-valyl-3-cyclohexyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-alaninamide"                                                                                                    
VHM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[(2~{S})-1-[[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]amino]-3-methyl-1-oxidanylidene-butan-2-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VHM "Create component" 2020-08-12 RCSB 
VHM "Initial release"  2020-12-23 RCSB 
VHM "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            VHM 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C25 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
