data_VEM
# 
_chem_comp.id                                    VEM 
_chem_comp.name                                  "N-(4-tert-butylphenyl)-N-[(1R)-2-[(2-methoxyethyl)amino]-2-oxo-1-(pyridin-3-yl)ethyl]propanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H31 N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-08-05 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        397.511 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VEM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5RL2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VEM N1  N1  N 0 1 N N N N N N 7.898  1.570  22.985 -1.490 -1.530 -0.844 N1  VEM 1  
VEM C4  C1  C 0 1 N N N N N N 8.070  0.956  21.819 -1.306 -0.478 -1.666 C4  VEM 2  
VEM C5  C2  C 0 1 N N N N N N 8.642  2.768  23.329 -1.864 -2.834 -1.395 C5  VEM 3  
VEM C6  C3  C 0 1 N N N N N N 8.025  3.958  22.665 -2.003 -3.848 -0.258 C6  VEM 4  
VEM C7  C4  C 0 1 N N N N N N 8.411  6.186  22.266 -3.307 -4.356 1.688  C7  VEM 5  
VEM C8  C5  C 0 1 Y N N N N N 6.352  0.202  20.122 -2.168 1.648  -0.774 C8  VEM 6  
VEM C10 C6  C 0 1 Y N N N N N 5.462  1.088  17.698 -4.369 3.125  -0.166 C10 VEM 7  
VEM C13 C7  C 0 1 Y N N N N N 8.718  -1.669 22.433 1.251  0.496  0.039  C13 VEM 8  
VEM C15 C8  C 0 1 Y N N N N N 11.121 -1.775 22.392 3.172  -0.358 -1.115 C15 VEM 9  
VEM C17 C9  C 0 1 Y N N N N N 9.964  -1.948 24.476 3.444  0.822  0.954  C17 VEM 10 
VEM C20 C10 C 0 1 N N N N N N 13.707 -1.981 23.588 6.014  0.593  -1.478 C20 VEM 11 
VEM C21 C11 C 0 1 N N N N N N 12.613 -3.107 25.502 5.796  -1.556 -0.223 C21 VEM 12 
VEM C22 C12 C 0 1 N N N N N N 12.632 -0.616 25.332 6.150  0.584  1.017  C22 VEM 13 
VEM O1  O1  O 0 1 N N N N N N 8.975  1.236  21.035 -1.450 -0.612 -2.863 O1  VEM 14 
VEM O2  O2  O 0 1 N N N N N N 9.004  4.946  22.529 -3.091 -3.470 0.588  O2  VEM 15 
VEM C3  C13 C 0 1 N N R N N N 7.010  -0.096 21.458 -0.922 0.864  -1.099 C3  VEM 16 
VEM C12 C14 C 0 1 Y N N N N N 5.233  1.019  20.056 -3.421 1.078  -0.947 C12 VEM 17 
VEM C11 C15 C 0 1 Y N N N N N 4.776  1.473  18.835 -4.539 1.836  -0.636 C11 VEM 18 
VEM N2  N2  N 0 1 Y N N N N N 6.534  0.290  17.721 -3.162 3.632  -0.008 N2  VEM 19 
VEM C9  C16 C 0 1 Y N N N N N 6.945  -0.147 18.916 -2.076 2.940  -0.294 C9  VEM 20 
VEM N   N3  N 0 1 N N N N N N 7.467  -1.476 21.754 -0.135 0.671  0.121  N   VEM 21 
VEM C2  C17 C 0 1 N N N N N N 6.654  -2.525 21.434 -0.745 0.662  1.323  C2  VEM 22 
VEM O   O3  O 0 1 N N N N N N 5.491  -2.357 21.104 -1.956 0.684  1.388  O   VEM 23 
VEM C1  C18 C 0 1 N N N N N N 7.247  -3.906 21.429 0.077  0.626  2.585  C1  VEM 24 
VEM C   C19 C 0 1 N N N N N N 7.131  -4.521 20.071 -0.776 0.087  3.734  C   VEM 25 
VEM C18 C20 C 0 1 Y N N N N N 8.751  -1.818 23.820 2.076  0.996  1.038  C18 VEM 26 
VEM C16 C21 C 0 1 Y N N N N N 11.169 -1.908 23.779 3.991  0.141  -0.118 C16 VEM 27 
VEM C19 C22 C 0 1 N N N N N N 12.507 -1.912 24.534 5.482  -0.059 -0.200 C19 VEM 28 
VEM C14 C23 C 0 1 Y N N N N N 9.915  -1.664 21.723 1.804  -0.182 -1.039 C14 VEM 29 
VEM H1  H1  H 0 1 N N N N N N 7.241  1.198  23.641 -1.372 -1.423 0.113  H1  VEM 30 
VEM H2  H2  H 0 1 N N N N N N 9.683  2.661  22.991 -2.814 -2.748 -1.922 H2  VEM 31 
VEM H3  H3  H 0 1 N N N N N N 8.623  2.908  24.420 -1.093 -3.170 -2.089 H3  VEM 32 
VEM H4  H4  H 0 1 N N N N N N 7.197  4.339  23.281 -2.193 -4.838 -0.674 H4  VEM 33 
VEM H5  H5  H 0 1 N N N N N N 7.644  3.674  21.673 -1.081 -3.870 0.324  H5  VEM 34 
VEM H6  H6  H 0 1 N N N N N N 9.193  6.952  22.162 -4.149 -3.999 2.281  H6  VEM 35 
VEM H7  H7  H 0 1 N N N N N N 7.831  6.125  21.333 -3.524 -5.355 1.312  H7  VEM 36 
VEM H8  H8  H 0 1 N N N N N N 7.742  6.456  23.096 -2.412 -4.388 2.310  H8  VEM 37 
VEM H9  H9  H 0 1 N N N N N N 5.114  1.451  16.742 -5.235 3.722  0.080  H9  VEM 38 
VEM H10 H10 H 0 1 N N N N N N 12.043 -1.758 21.829 3.602  -0.890 -1.950 H10 VEM 39 
VEM H11 H11 H 0 1 N N N N N N 9.976  -2.083 25.547 4.086  1.211  1.730  H11 VEM 40 
VEM H12 H12 H 0 1 N N N N N N 14.638 -1.981 24.175 5.791  1.660  -1.462 H12 VEM 41 
VEM H13 H13 H 0 1 N N N N N N 13.650 -2.903 22.990 7.093  0.449  -1.537 H13 VEM 42 
VEM H14 H14 H 0 1 N N N N N N 13.696 -1.109 22.918 5.538  0.135  -2.345 H14 VEM 43 
VEM H15 H15 H 0 1 N N N N N N 11.763 -3.090 26.200 6.875  -1.700 -0.282 H15 VEM 44 
VEM H16 H16 H 0 1 N N N N N N 12.598 -4.046 24.929 5.417  -2.020 0.688  H16 VEM 45 
VEM H17 H17 H 0 1 N N N N N N 13.554 -3.038 26.068 5.320  -2.014 -1.090 H17 VEM 46 
VEM H18 H18 H 0 1 N N N N N N 11.784 -0.529 26.027 5.927  1.651  1.033  H18 VEM 47 
VEM H19 H19 H 0 1 N N N N N N 13.573 -0.626 25.902 5.771  0.120  1.927  H19 VEM 48 
VEM H20 H20 H 0 1 N N N N N N 12.630 0.241  24.642 7.229  0.440  0.957  H20 VEM 49 
VEM H21 H21 H 0 1 N N N N N N 6.209  0.083  22.190 -0.329 1.412  -1.832 H21 VEM 50 
VEM H22 H22 H 0 1 N N N N N N 4.718  1.301  20.962 -3.523 0.068  -1.317 H22 VEM 51 
VEM H23 H23 H 0 1 N N N N N N 3.907  2.111  18.770 -5.530 1.425  -0.758 H23 VEM 52 
VEM H24 H24 H 0 1 N N N N N N 7.793  -0.815 18.945 -1.105 3.389  -0.152 H24 VEM 53 
VEM H25 H25 H 0 1 N N N N N N 6.711  -4.533 22.157 0.940  -0.024 2.438  H25 VEM 54 
VEM H26 H26 H 0 1 N N N N N N 8.309  -3.845 21.709 0.418  1.633  2.826  H26 VEM 55 
VEM H27 H27 H 0 1 N N N N N N 7.569  -5.530 20.086 -1.639 0.736  3.882  H27 VEM 56 
VEM H28 H28 H 0 1 N N N N N N 6.070  -4.587 19.788 -1.117 -0.920 3.493  H28 VEM 57 
VEM H29 H29 H 0 1 N N N N N N 7.668  -3.899 19.340 -0.182 0.060  4.648  H29 VEM 58 
VEM H30 H30 H 0 1 N N N N N N 7.829  -1.832 24.383 1.649  1.521  1.880  H30 VEM 59 
VEM H31 H31 H 0 1 N N N N N N 9.902  -1.573 20.647 1.165  -0.572 -1.818 H31 VEM 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VEM C10 N2  DOUB Y N 1  
VEM C10 C11 SING Y N 2  
VEM N2  C9  SING Y N 3  
VEM C11 C12 DOUB Y N 4  
VEM C9  C8  DOUB Y N 5  
VEM C12 C8  SING Y N 6  
VEM C   C1  SING N N 7  
VEM C8  C3  SING N N 8  
VEM O1  C4  DOUB N N 9  
VEM O   C2  DOUB N N 10 
VEM C1  C2  SING N N 11 
VEM C2  N   SING N N 12 
VEM C3  N   SING N N 13 
VEM C3  C4  SING N N 14 
VEM C14 C15 DOUB Y N 15 
VEM C14 C13 SING Y N 16 
VEM N   C13 SING N N 17 
VEM C4  N1  SING N N 18 
VEM C7  O2  SING N N 19 
VEM C15 C16 SING Y N 20 
VEM C13 C18 DOUB Y N 21 
VEM O2  C6  SING N N 22 
VEM C6  C5  SING N N 23 
VEM N1  C5  SING N N 24 
VEM C20 C19 SING N N 25 
VEM C16 C17 DOUB Y N 26 
VEM C16 C19 SING N N 27 
VEM C18 C17 SING Y N 28 
VEM C19 C22 SING N N 29 
VEM C19 C21 SING N N 30 
VEM N1  H1  SING N N 31 
VEM C5  H2  SING N N 32 
VEM C5  H3  SING N N 33 
VEM C6  H4  SING N N 34 
VEM C6  H5  SING N N 35 
VEM C7  H6  SING N N 36 
VEM C7  H7  SING N N 37 
VEM C7  H8  SING N N 38 
VEM C10 H9  SING N N 39 
VEM C15 H10 SING N N 40 
VEM C17 H11 SING N N 41 
VEM C20 H12 SING N N 42 
VEM C20 H13 SING N N 43 
VEM C20 H14 SING N N 44 
VEM C21 H15 SING N N 45 
VEM C21 H16 SING N N 46 
VEM C21 H17 SING N N 47 
VEM C22 H18 SING N N 48 
VEM C22 H19 SING N N 49 
VEM C22 H20 SING N N 50 
VEM C3  H21 SING N N 51 
VEM C12 H22 SING N N 52 
VEM C11 H23 SING N N 53 
VEM C9  H24 SING N N 54 
VEM C1  H25 SING N N 55 
VEM C1  H26 SING N N 56 
VEM C   H27 SING N N 57 
VEM C   H28 SING N N 58 
VEM C   H29 SING N N 59 
VEM C18 H30 SING N N 60 
VEM C14 H31 SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VEM SMILES           ACDLabs              12.01 "N(CCOC)C(=O)C(c1cccnc1)N(c2ccc(cc2)C(C)(C)C)C(=O)CC"                                                                                                        
VEM InChI            InChI                1.03  "InChI=1S/C23H31N3O3/c1-6-20(27)26(19-11-9-18(10-12-19)23(2,3)4)21(17-8-7-13-24-16-17)22(28)25-14-15-29-5/h7-13,16,21H,6,14-15H2,1-5H3,(H,25,28)/t21-/m1/s1" 
VEM InChIKey         InChI                1.03  VGALAKWGAVFSCK-OAQYLSRUSA-N                                                                                                                                  
VEM SMILES_CANONICAL CACTVS               3.385 "CCC(=O)N([C@@H](C(=O)NCCOC)c1cccnc1)c2ccc(cc2)C(C)(C)C"                                                                                                     
VEM SMILES           CACTVS               3.385 "CCC(=O)N([CH](C(=O)NCCOC)c1cccnc1)c2ccc(cc2)C(C)(C)C"                                                                                                       
VEM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(c1ccc(cc1)C(C)(C)C)[C@H](c2cccnc2)C(=O)NCCOC"                                                                                                      
VEM SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(c1ccc(cc1)C(C)(C)C)C(c2cccnc2)C(=O)NCCOC"                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VEM "SYSTEMATIC NAME" ACDLabs              12.01 "N-(4-tert-butylphenyl)-N-[(1R)-2-[(2-methoxyethyl)amino]-2-oxo-1-(pyridin-3-yl)ethyl]propanamide"                    
VEM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-(4-~{tert}-butylphenyl)-~{N}-[(1~{R})-2-(2-methoxyethylamino)-2-oxidanylidene-1-pyridin-3-yl-ethyl]propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VEM "Create component" 2020-08-05 RCSB 
VEM "Initial release"  2020-12-02 RCSB 
VEM "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            VEM 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
