data_USM
# 
_chem_comp.id                                    USM 
_chem_comp.name                                  
;2'-S-methyl-2'-thiouridine 5'-(dihydrogen phosphate)
;
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H15 N2 O8 P S" 
_chem_comp.mon_nstd_parent_comp_id               DU 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2008-10-29 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        354.273 
_chem_comp.one_letter_code                       U 
_chem_comp.three_letter_code                     USM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3EY1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
USM OP2    OP2    O 0 1 N N N 8.073  -11.502 -1.566 -5.009 1.996  -1.129 OP2    USM 1  
USM P      P      P 0 1 N N N 8.795  -12.112 -2.850 -4.543 0.925  -0.021 P      USM 2  
USM OP1    OP1    O 0 1 N N N 8.542  -11.213 -3.994 -4.451 1.590  1.299  OP1    USM 3  
USM OP3    OP3    O 0 1 N Y N 10.193 -12.462 -2.497 -5.618 -0.271 0.055  OP3    USM 4  
USM "O5'"  "O5'"  O 0 1 N N N 7.960  -13.474 -3.037 -3.103 0.329  -0.423 "O5'"  USM 5  
USM N1     N1     N 0 1 N N N 3.208  -11.796 -2.184 2.139  0.696  -0.157 N1     USM 6  
USM C6     C6     C 0 1 N N N 3.995  -10.878 -2.818 2.039  1.334  1.049  C6     USM 7  
USM C2     C2     C 0 1 N N N 1.913  -11.607 -1.817 3.150  0.978  -0.999 C2     USM 8  
USM O2     O2     O 0 1 N N N 1.197  -12.407 -1.245 3.222  0.397  -2.065 O2     USM 9  
USM N3     N3     N 0 1 N N N 1.431  -10.345 -2.145 4.081  1.896  -0.680 N3     USM 10 
USM C4     C4     C 0 1 N N N 2.158  -9.359  -2.784 4.015  2.549  0.498  C4     USM 11 
USM O4     O4     O 0 1 N N N 1.614  -8.284  -3.026 4.858  3.379  0.788  O4     USM 12 
USM C5     C5     C 0 1 N N N 3.529  -9.660  -3.140 2.963  2.255  1.398  C5     USM 13 
USM "C2'"  "C2'"  C 0 1 N N R 3.274  -14.506 -2.503 1.212  -1.521 0.421  "C2'"  USM 14 
USM "S2'"  "S2'"  S 0 1 N N N 3.344  -15.737 -1.177 2.173  -2.864 -0.329 "S2'"  USM 15 
USM C2A    C2A    C 0 1 N N N 1.983  -15.236 -0.123 2.256  -4.097 0.998  C2A    USM 16 
USM "C5'"  "C5'"  C 0 1 N N N 6.660  -13.421 -3.643 -2.371 -0.569 0.414  "C5'"  USM 17 
USM "C4'"  "C4'"  C 0 1 N N R 5.603  -14.021 -2.756 -1.051 -0.938 -0.266 "C4'"  USM 18 
USM "O4'"  "O4'"  O 0 1 N N N 5.040  -13.036 -1.863 -0.193 0.220  -0.359 "O4'"  USM 19 
USM "C1'"  "C1'"  C 0 1 N N R 3.628  -13.224 -1.755 1.141  -0.308 -0.533 "C1'"  USM 20 
USM "C3'"  "C3'"  C 0 1 N N R 4.391  -14.570 -3.509 -0.263 -1.945 0.601  "C3'"  USM 21 
USM "O3'"  "O3'"  O 0 1 N N N 4.642  -15.914 -4.028 -0.462 -3.278 0.126  "O3'"  USM 22 
USM HOP2   HOP2   H 0 0 N N N 8.710  -11.381 -0.872 -5.871 2.397  -0.951 HOP2   USM 23 
USM HOP3   HOP3   H 0 0 N Y N 10.711 -12.537 -3.290 -5.730 -0.752 -0.777 HOP3   USM 24 
USM H6     H6     H 0 1 N N N 5.014  -11.137 -3.066 1.224  1.102  1.719  H6     USM 25 
USM H5     H5     H 0 1 N N N 4.151  -8.935  -3.644 2.895  2.766  2.347  H5     USM 26 
USM "H2'"  "H2'"  H 0 1 N N N 2.314  -14.618 -3.028 1.647  -1.229 1.377  "H2'"  USM 27 
USM H2A    H2A    H 0 1 N N N 2.339  -15.133 0.913  1.247  -4.406 1.271  H2A    USM 28 
USM H2AA   H2AA   H 0 0 N N N 1.586  -14.271 -0.471 2.820  -4.964 0.654  H2AA   USM 29 
USM H2AB   H2AB   H 0 0 N N N 1.189  -15.996 -0.164 2.750  -3.663 1.867  H2AB   USM 30 
USM "H5'"  "H5'"  H 0 1 N N N 6.403  -12.369 -3.835 -2.165 -0.088 1.370  "H5'"  USM 31 
USM "H5'A" "H5'A" H 0 0 N N N 6.694  -14.002 -4.577 -2.959 -1.472 0.580  "H5'A" USM 32 
USM "H4'"  "H4'"  H 0 1 N N N 6.140  -14.829 -2.237 -1.238 -1.352 -1.257 "H4'"  USM 33 
USM "H1'"  "H1'"  H 0 1 N N N 3.092  -13.460 -0.824 1.293  -0.627 -1.564 "H1'"  USM 34 
USM "H3'"  "H3'"  H 0 1 N N N 4.143  -13.991 -4.411 -0.559 -1.862 1.646  "H3'"  USM 35 
USM "HO3'" "HO3'" H 0 0 N Y N 4.696  -15.883 -4.976 -1.371 -3.595 0.215  "HO3'" USM 36 
USM HN3    HN3    H 0 1 N N N 0.485  -10.134 -1.899 4.803  2.087  -1.298 HN3    USM 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
USM P     OP2    SING N N 1  
USM OP2   HOP2   SING N N 2  
USM OP1   P      DOUB N N 3  
USM "O5'" P      SING N N 4  
USM P     OP3    SING N N 5  
USM OP3   HOP3   SING N N 6  
USM "C5'" "O5'"  SING N N 7  
USM C6    N1     SING N N 8  
USM N1    C2     SING N N 9  
USM N1    "C1'"  SING N N 10 
USM C5    C6     DOUB N N 11 
USM C6    H6     SING N N 12 
USM N3    C2     SING N N 13 
USM C2    O2     DOUB N N 14 
USM C4    N3     SING N N 15 
USM C5    C4     SING N N 16 
USM O4    C4     DOUB N N 17 
USM C5    H5     SING N N 18 
USM "C3'" "C2'"  SING N N 19 
USM "C2'" "C1'"  SING N N 20 
USM "C2'" "S2'"  SING N N 21 
USM "C2'" "H2'"  SING N N 22 
USM "S2'" C2A    SING N N 23 
USM C2A   H2A    SING N N 24 
USM C2A   H2AA   SING N N 25 
USM C2A   H2AB   SING N N 26 
USM "C5'" "C4'"  SING N N 27 
USM "C5'" "H5'"  SING N N 28 
USM "C5'" "H5'A" SING N N 29 
USM "C3'" "C4'"  SING N N 30 
USM "C4'" "O4'"  SING N N 31 
USM "C4'" "H4'"  SING N N 32 
USM "O4'" "C1'"  SING N N 33 
USM "C1'" "H1'"  SING N N 34 
USM "O3'" "C3'"  SING N N 35 
USM "C3'" "H3'"  SING N N 36 
USM "O3'" "HO3'" SING N N 37 
USM N3    HN3    SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
USM SMILES           ACDLabs              10.04 "O=C1NC(=O)N(C=C1)C2OC(C(O)C2SC)COP(=O)(O)O"                                                                                                               
USM SMILES_CANONICAL CACTVS               3.341 "CS[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1N2C=CC(=O)NC2=O"                                                                                             
USM SMILES           CACTVS               3.341 "CS[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2C=CC(=O)NC2=O"                                                                                                   
USM SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CS[C@@H]1[C@@H]([C@H](O[C@H]1N2C=CC(=O)NC2=O)COP(=O)(O)O)O"                                                                                               
USM SMILES           "OpenEye OEToolkits" 1.5.0 "CSC1C(C(OC1N2C=CC(=O)NC2=O)COP(=O)(O)O)O"                                                                                                                 
USM InChI            InChI                1.03  "InChI=1S/C10H15N2O8PS/c1-22-8-7(14)5(4-19-21(16,17)18)20-9(8)12-3-2-6(13)11-10(12)15/h2-3,5,7-9,14H,4H2,1H3,(H,11,13,15)(H2,16,17,18)/t5-,7-,8-,9-/m1/s1" 
USM InChIKey         InChI                1.03  NZYFPIYZUCYZKH-ZOQUXTDFSA-N                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
USM "SYSTEMATIC NAME" ACDLabs              10.04 
;2'-S-methyl-2'-thiouridine 5'-(dihydrogen phosphate)
;
USM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3-hydroxy-4-methylsulfanyl-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
USM "Create component"  2008-10-29 RCSB 
USM "Modify descriptor" 2011-06-04 RCSB 
# 
