data_UEM
# 
_chem_comp.id                                    UEM 
_chem_comp.name                                  "(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-[4-azanyl-5-(2-naphthalen-1-ylethynyl)pyrrolo[2,3-d]pyrimidin-7-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H27 N5 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-02 
_chem_comp.pdbx_modified_date                    2023-03-31 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        533.599 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     UEM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8CER 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UEM C15 C1  C 0 1 N N N 23.181 21.614 48.436 3.337  -0.132 0.204  C15 UEM 1  
UEM C17 C2  C 0 1 Y N N 23.081 22.825 50.767 4.695  -2.349 0.026  C17 UEM 2  
UEM N   N1  N 0 1 N N N 18.728 13.285 41.645 -7.945 -1.827 -0.747 N   UEM 3  
UEM CA  C3  C 0 1 N N S 20.076 13.251 41.014 -6.898 -2.440 0.081  CA  UEM 4  
UEM C   C4  C 0 1 N N N 20.075 12.244 39.858 -7.537 -3.257 1.175  C   UEM 5  
UEM O   O1  O 0 1 N N N 19.024 12.136 39.191 -8.685 -3.050 1.491  O   UEM 6  
UEM CB  C5  C 0 1 N N N 21.148 12.893 42.046 -6.033 -1.342 0.704  CB  UEM 7  
UEM OXT O2  O 0 1 N N N 21.134 11.597 39.674 -6.831 -4.214 1.797  OXT UEM 8  
UEM C10 C6  C 0 1 Y N N 21.807 22.615 43.538 3.365  4.962  1.452  C10 UEM 9  
UEM C12 C7  C 0 1 Y N N 22.662 21.050 44.856 2.002  3.277  0.679  C12 UEM 10 
UEM C13 C8  C 0 1 Y N N 22.588 21.891 45.984 3.091  2.393  0.754  C13 UEM 11 
UEM C14 C9  C 0 1 Y N N 23.099 21.127 47.093 2.590  1.086  0.302  C14 UEM 12 
UEM C16 C10 C 0 1 N N N 23.188 22.108 49.528 3.948  -1.131 0.124  C16 UEM 13 
UEM C18 C11 C 0 1 Y N N 22.066 22.528 51.647 6.039  -2.389 0.381  C18 UEM 14 
UEM C19 C12 C 0 1 Y N N 21.913 23.243 52.823 6.758  -3.572 0.290  C19 UEM 15 
UEM C20 C13 C 0 1 Y N N 22.767 24.261 53.142 6.186  -4.729 -0.144 C20 UEM 16 
UEM C21 C14 C 0 1 Y N N 23.829 24.612 52.275 4.832  -4.763 -0.519 C21 UEM 17 
UEM C22 C15 C 0 1 Y N N 23.997 23.885 51.062 4.058  -3.579 -0.443 C22 UEM 18 
UEM C23 C16 C 0 1 Y N N 25.064 24.246 50.203 2.710  -3.609 -0.816 C23 UEM 19 
UEM C24 C17 C 0 1 Y N N 25.913 25.267 50.529 2.156  -4.777 -1.249 C24 UEM 20 
UEM C25 C18 C 0 1 Y N N 25.748 25.973 51.709 2.914  -5.943 -1.325 C25 UEM 21 
UEM C26 C19 C 0 1 Y N N 24.733 25.661 52.570 4.228  -5.950 -0.969 C26 UEM 22 
UEM C27 C20 C 0 1 Y N N 23.448 19.895 46.597 1.275  1.265  -0.005 C27 UEM 23 
UEM C29 C21 C 0 1 N N R 23.392 18.691 44.364 -0.411 3.122  -0.002 C29 UEM 24 
UEM C30 C22 C 0 1 N N R 24.806 18.133 44.347 -0.524 3.700  -1.431 C30 UEM 25 
UEM C32 C23 C 0 1 N N S 24.563 16.715 43.809 -1.966 3.354  -1.863 C32 UEM 26 
UEM C34 C24 C 0 1 N N S 23.115 16.414 44.215 -2.554 2.608  -0.644 C34 UEM 27 
UEM C36 C25 C 0 1 N N N 22.828 15.219 45.105 -3.469 1.472  -1.106 C36 UEM 28 
UEM C38 C26 C 0 1 N N N 21.236 13.871 43.208 -5.287 -0.593 -0.401 C38 UEM 29 
UEM C8  C27 C 0 1 Y N N 22.061 23.188 45.761 4.326  2.880  1.202  C8  UEM 30 
UEM N11 N2  N 0 1 Y N N 22.284 21.372 43.614 2.188  4.547  1.038  N11 UEM 31 
UEM N28 N3  N 0 1 Y N N 23.185 19.838 45.245 0.926  2.566  0.219  N28 UEM 32 
UEM N7  N4  N 0 1 N N N 21.934 24.108 46.721 5.426  2.046  1.292  N7  UEM 33 
UEM N9  N5  N 0 1 Y N N 21.675 23.520 44.510 4.414  4.164  1.538  N9  UEM 34 
UEM O31 O3  O 0 1 N N N 25.630 18.890 43.466 -0.329 5.115  -1.415 O31 UEM 35 
UEM O33 O4  O 0 1 N N N 24.720 16.651 42.395 -2.710 4.545  -2.127 O33 UEM 36 
UEM O35 O5  O 0 1 N N N 22.584 17.622 44.805 -1.406 2.077  0.053  O35 UEM 37 
UEM S37 S1  S 0 1 N N N 22.602 13.580 44.364 -4.261 0.708  0.337  S37 UEM 38 
UEM H1  H1  H 0 1 N N N 18.729 13.942 42.399 -8.536 -1.223 -0.195 H1  UEM 39 
UEM H2  H2  H 0 1 N N N 18.048 13.560 40.965 -7.543 -1.326 -1.526 H2  UEM 40 
UEM H4  H4  H 0 1 N N N 20.305 14.247 40.606 -6.276 -3.085 -0.539 H4  UEM 41 
UEM H5  H5  H 0 1 N N N 20.921 11.895 42.450 -6.668 -0.646 1.251  H5  UEM 42 
UEM H6  H6  H 0 1 N N N 22.124 12.870 41.538 -5.313 -1.792 1.388  H6  UEM 43 
UEM H7  H7  H 0 1 N N N 21.019 11.003 38.942 -7.284 -4.711 2.492  H7  UEM 44 
UEM H8  H8  H 0 1 N N N 21.484 22.932 42.557 3.480  6.000  1.730  H8  UEM 45 
UEM H9  H9  H 0 1 N N N 21.379 21.727 51.418 6.528  -1.491 0.730  H9  UEM 46 
UEM H10 H10 H 0 1 N N N 21.108 22.993 53.497 7.800  -3.576 0.572  H10 UEM 47 
UEM H11 H11 H 0 1 N N N 22.630 24.804 54.066 6.779  -5.630 -0.202 H11 UEM 48 
UEM H12 H12 H 0 1 N N N 25.209 23.707 49.278 2.112  -2.711 -0.762 H12 UEM 49 
UEM H13 H13 H 0 1 N N N 26.720 25.525 49.860 1.115  -4.798 -1.536 H13 UEM 50 
UEM H14 H14 H 0 1 N N N 26.427 26.777 51.951 2.452  -6.856 -1.671 H14 UEM 51 
UEM H15 H15 H 0 1 N N N 24.619 26.221 53.486 4.804  -6.861 -1.034 H15 UEM 52 
UEM H16 H16 H 0 1 N N N 23.867 19.089 47.181 0.611  0.495  -0.370 H16 UEM 53 
UEM H17 H17 H 0 1 N N N 23.116 18.970 43.336 -0.628 3.892  0.738  H17 UEM 54 
UEM H18 H18 H 0 1 N N N 25.219 18.091 45.366 0.198  3.223  -2.093 H18 UEM 55 
UEM H19 H19 H 0 1 N N N 25.240 16.010 44.314 -1.957 2.706  -2.739 H19 UEM 56 
UEM H20 H20 H 0 1 N N N 22.564 16.241 43.278 -3.101 3.300  -0.004 H20 UEM 57 
UEM H21 H21 H 0 1 N N N 23.669 15.137 45.810 -4.235 1.870  -1.772 H21 UEM 58 
UEM H22 H22 H 0 1 N N N 21.906 15.448 45.659 -2.880 0.723  -1.636 H22 UEM 59 
UEM H23 H23 H 0 1 N N N 21.352 14.883 42.792 -4.652 -1.289 -0.949 H23 UEM 60 
UEM H24 H24 H 0 1 N N N 20.294 13.813 43.773 -6.007 -0.143 -1.085 H24 UEM 61 
UEM H25 H25 H 0 1 N N N 21.550 24.945 46.332 5.349  1.112  1.043  H25 UEM 62 
UEM H26 H26 H 0 1 N N N 21.326 23.762 47.435 6.276  2.396  1.604  H26 UEM 63 
UEM H27 H27 H 0 1 N N N 25.762 19.760 43.824 -0.389 5.530  -2.286 H27 UEM 64 
UEM H28 H28 H 0 1 N N N 25.623 16.840 42.167 -2.383 5.053  -2.882 H28 UEM 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UEM O   C   DOUB N N 1  
UEM OXT C   SING N N 2  
UEM C   CA  SING N N 3  
UEM CA  N   SING N N 4  
UEM CA  CB  SING N N 5  
UEM CB  C38 SING N N 6  
UEM O33 C32 SING N N 7  
UEM C38 S37 SING N N 8  
UEM O31 C30 SING N N 9  
UEM C10 N11 DOUB Y N 10 
UEM C10 N9  SING Y N 11 
UEM N11 C12 SING Y N 12 
UEM C32 C34 SING N N 13 
UEM C32 C30 SING N N 14 
UEM C34 O35 SING N N 15 
UEM C34 C36 SING N N 16 
UEM C30 C29 SING N N 17 
UEM S37 C36 SING N N 18 
UEM C29 O35 SING N N 19 
UEM C29 N28 SING N N 20 
UEM N9  C8  DOUB Y N 21 
UEM C12 N28 SING Y N 22 
UEM C12 C13 DOUB Y N 23 
UEM N28 C27 SING Y N 24 
UEM C8  C13 SING Y N 25 
UEM C8  N7  SING N N 26 
UEM C13 C14 SING Y N 27 
UEM C27 C14 DOUB Y N 28 
UEM C14 C15 SING N N 29 
UEM C15 C16 TRIP N N 30 
UEM C16 C17 SING N N 31 
UEM C23 C24 DOUB Y N 32 
UEM C23 C22 SING Y N 33 
UEM C24 C25 SING Y N 34 
UEM C17 C22 DOUB Y N 35 
UEM C17 C18 SING Y N 36 
UEM C22 C21 SING Y N 37 
UEM C18 C19 DOUB Y N 38 
UEM C25 C26 DOUB Y N 39 
UEM C21 C26 SING Y N 40 
UEM C21 C20 DOUB Y N 41 
UEM C19 C20 SING Y N 42 
UEM N   H1  SING N N 43 
UEM N   H2  SING N N 44 
UEM CA  H4  SING N N 45 
UEM CB  H5  SING N N 46 
UEM CB  H6  SING N N 47 
UEM OXT H7  SING N N 48 
UEM C10 H8  SING N N 49 
UEM C18 H9  SING N N 50 
UEM C19 H10 SING N N 51 
UEM C20 H11 SING N N 52 
UEM C23 H12 SING N N 53 
UEM C24 H13 SING N N 54 
UEM C25 H14 SING N N 55 
UEM C26 H15 SING N N 56 
UEM C27 H16 SING N N 57 
UEM C29 H17 SING N N 58 
UEM C30 H18 SING N N 59 
UEM C32 H19 SING N N 60 
UEM C34 H20 SING N N 61 
UEM C36 H21 SING N N 62 
UEM C36 H22 SING N N 63 
UEM C38 H23 SING N N 64 
UEM C38 H24 SING N N 65 
UEM N7  H25 SING N N 66 
UEM N7  H26 SING N N 67 
UEM O31 H27 SING N N 68 
UEM O33 H28 SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UEM InChI            InChI                1.06  "InChI=1S/C27H27N5O5S/c28-19(27(35)36)10-11-38-13-20-22(33)23(34)26(37-20)32-12-17(21-24(29)30-14-31-25(21)32)9-8-16-6-3-5-15-4-1-2-7-18(15)16/h1-7,12,14,19-20,22-23,26,33-34H,10-11,13,28H2,(H,35,36)(H2,29,30,31)/t19-,20+,22+,23+,26+/m0/s1" 
UEM InChIKey         InChI                1.06  DUHQEPMMBOHBMU-CIPJCTFPSA-N                                                                                                                                                                                                                      
UEM SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CCSC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cc(C#Cc3cccc4ccccc34)c5c(N)ncnc25)C(O)=O"                                                                                                                                                           
UEM SMILES           CACTVS               3.385 "N[CH](CCSC[CH]1O[CH]([CH](O)[CH]1O)n2cc(C#Cc3cccc4ccccc34)c5c(N)ncnc25)C(O)=O"                                                                                                                                                                  
UEM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cccc2C#Cc3cn(c4c3c(ncn4)N)[C@H]5[C@@H]([C@@H]([C@H](O5)CSCC[C@@H](C(=O)O)N)O)O"                                                                                                                                                      
UEM SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cccc2C#Cc3cn(c4c3c(ncn4)N)C5C(C(C(O5)CSCCC(C(=O)O)N)O)O"                                                                                                                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           UEM 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-[4-azanyl-5-(2-naphthalen-1-ylethynyl)pyrrolo[2,3-d]pyrimidin-7-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UEM "Create component" 2023-02-02 PDBE 
UEM "Initial release"  2023-04-05 RCSB 
# 
