data_U6M
# 
_chem_comp.id                                    U6M 
_chem_comp.name                                  
;6-methyluridine 5'-(dihydrogen phosphate)
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H15 N2 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-10-29 
_chem_comp.pdbx_modified_date                    2013-11-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        338.208 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     U6M 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3WJW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
U6M O2    O2    O 0 1 N N N 15.916 38.626 37.102 1.042  1.029  1.316  O2    U6M 1  
U6M C2    C2    C 0 1 N N N 15.574 39.582 36.385 2.069  1.025  0.665  C2    U6M 2  
U6M N3    N3    N 0 1 N N N 14.258 39.887 36.297 2.988  1.987  0.870  N3    U6M 3  
U6M C4    C4    C 0 1 N N N 13.845 40.929 35.560 4.132  1.998  0.157  C4    U6M 4  
U6M O4    O4    O 0 1 N N N 12.598 41.105 35.478 4.964  2.868  0.342  O4    U6M 5  
U6M C5    C5    C 0 1 N N N 14.716 41.501 34.645 4.358  0.988  -0.809 C5    U6M 6  
U6M C6    C6    C 0 1 N N N 16.058 41.129 34.598 3.420  0.034  -0.994 C6    U6M 7  
U6M C7    C7    C 0 1 N N N 16.799 41.286 33.289 3.635  -1.052 -2.016 C7    U6M 8  
U6M N1    N1    N 0 1 N N N 16.530 40.266 35.655 2.274  0.057  -0.246 N1    U6M 9  
U6M "C1'" "C1'" C 0 1 N N R 17.978 40.011 35.851 1.256  -0.978 -0.447 "C1'" U6M 10 
U6M "O4'" "O4'" O 0 1 N N N 18.208 38.674 35.337 -0.051 -0.382 -0.599 "O4'" U6M 11 
U6M "C2'" "C2'" C 0 1 N N R 18.473 39.996 37.264 1.109  -1.853 0.824  "C2'" U6M 12 
U6M "O2'" "O2'" O 0 1 N N N 18.928 41.308 37.575 2.056  -2.923 0.818  "O2'" U6M 13 
U6M "C3'" "C3'" C 0 1 N N S 19.629 39.028 37.189 -0.335 -2.392 0.681  "C3'" U6M 14 
U6M "O3'" "O3'" O 0 1 N N N 20.758 39.683 36.579 -0.325 -3.708 0.123  "O3'" U6M 15 
U6M "C4'" "C4'" C 0 1 N N R 19.132 37.988 36.210 -1.015 -1.400 -0.283 "C4'" U6M 16 
U6M "C5'" "C5'" C 0 1 N N N 18.386 36.824 36.853 -2.234 -0.770 0.394  "C5'" U6M 17 
U6M "O5'" "O5'" O 0 1 N N N 19.431 36.041 37.461 -2.915 0.071  -0.539 "O5'" U6M 18 
U6M P     P     P 0 1 N N N 19.074 34.705 38.298 -4.246 0.896  -0.167 P     U6M 19 
U6M O3P   O3P   O 0 1 N N N 18.964 33.592 37.315 -5.271 -0.033 0.360  O3P   U6M 20 
U6M O1P   O1P   O 0 1 N N N 17.781 34.892 39.007 -3.898 2.001  0.951  O1P   U6M 21 
U6M O2P   O2P   O 0 1 N N N 20.250 34.570 39.236 -4.812 1.627  -1.485 O2P   U6M 22 
U6M H1    H1    H 0 1 N N N 13.587 39.330 36.786 2.826  2.676  1.534  H1    U6M 23 
U6M H2    H2    H 0 1 N N N 14.348 42.248 33.957 5.268  0.980  -1.390 H2    U6M 24 
U6M H5    H5    H 0 1 N N N 17.840 40.952 33.414 4.599  -0.905 -2.504 H5    U6M 25 
U6M H6    H6    H 0 1 N N N 16.309 40.677 32.515 3.623  -2.024 -1.522 H6    U6M 26 
U6M H7    H7    H 0 1 N N N 16.787 42.343 32.986 2.841  -1.013 -2.761 H7    U6M 27 
U6M H8    H8    H 0 1 N N N 18.561 40.741 35.270 1.502  -1.594 -1.312 H8    U6M 28 
U6M H9    H9    H 0 1 N N N 17.698 39.640 37.959 1.212  -1.250 1.725  H9    U6M 29 
U6M H10   H10   H 0 1 N N N 19.249 41.329 38.469 2.003  -3.499 1.593  H10   U6M 30 
U6M H11   H11   H 0 1 N N N 19.863 38.590 38.170 -0.840 -2.392 1.647  H11   U6M 31 
U6M H12   H12   H 0 1 N N N 21.097 40.346 37.169 0.141  -4.360 0.664  H12   U6M 32 
U6M H13   H13   H 0 1 N N N 19.982 37.596 35.632 -1.322 -1.916 -1.193 H13   U6M 33 
U6M H14   H14   H 0 1 N N N 17.675 37.185 37.611 -2.908 -1.557 0.733  H14   U6M 34 
U6M H15   H15   H 0 1 N N N 17.847 36.237 36.095 -1.909 -0.177 1.248  H15   U6M 35 
U6M H16   H16   H 0 1 N N N 17.149 34.260 38.685 -3.232 2.645  0.674  H16   U6M 36 
U6M H17   H17   H 0 1 N N N 20.730 33.776 39.031 -5.615 2.144  -1.335 H17   U6M 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
U6M C7    C6    SING N N 1  
U6M C6    C5    DOUB N N 2  
U6M C6    N1    SING N N 3  
U6M C5    C4    SING N N 4  
U6M "O4'" "C1'" SING N N 5  
U6M "O4'" "C4'" SING N N 6  
U6M O4    C4    DOUB N N 7  
U6M C4    N3    SING N N 8  
U6M N1    "C1'" SING N N 9  
U6M N1    C2    SING N N 10 
U6M "C1'" "C2'" SING N N 11 
U6M "C4'" "C5'" SING N N 12 
U6M "C4'" "C3'" SING N N 13 
U6M N3    C2    SING N N 14 
U6M C2    O2    DOUB N N 15 
U6M "O3'" "C3'" SING N N 16 
U6M "C5'" "O5'" SING N N 17 
U6M "C3'" "C2'" SING N N 18 
U6M "C2'" "O2'" SING N N 19 
U6M O3P   P     DOUB N N 20 
U6M "O5'" P     SING N N 21 
U6M P     O1P   SING N N 22 
U6M P     O2P   SING N N 23 
U6M N3    H1    SING N N 24 
U6M C5    H2    SING N N 25 
U6M C7    H5    SING N N 26 
U6M C7    H6    SING N N 27 
U6M C7    H7    SING N N 28 
U6M "C1'" H8    SING N N 29 
U6M "C2'" H9    SING N N 30 
U6M "O2'" H10   SING N N 31 
U6M "C3'" H11   SING N N 32 
U6M "O3'" H12   SING N N 33 
U6M "C4'" H13   SING N N 34 
U6M "C5'" H14   SING N N 35 
U6M "C5'" H15   SING N N 36 
U6M O1P   H16   SING N N 37 
U6M O2P   H17   SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
U6M SMILES           ACDLabs              12.01 "O=P(O)(O)OCC2OC(N1C(=O)NC(=O)C=C1C)C(O)C2O"                                                                                                              
U6M InChI            InChI                1.03  "InChI=1S/C10H15N2O9P/c1-4-2-6(13)11-10(16)12(4)9-8(15)7(14)5(21-9)3-20-22(17,18)19/h2,5,7-9,14-15H,3H2,1H3,(H,11,13,16)(H2,17,18,19)/t5-,7-,8-,9-/m1/s1" 
U6M InChIKey         InChI                1.03  CHBBJHPQYVYKFI-ZOQUXTDFSA-N                                                                                                                               
U6M SMILES_CANONICAL CACTVS               3.385 "CC1=CC(=O)NC(=O)N1[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O"                                                                                          
U6M SMILES           CACTVS               3.385 "CC1=CC(=O)NC(=O)N1[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O"                                                                                                
U6M SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1=CC(=O)NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O"                                                                                          
U6M SMILES           "OpenEye OEToolkits" 1.7.6 "CC1=CC(=O)NC(=O)N1C2C(C(C(O2)COP(=O)(O)O)O)O"                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
U6M "SYSTEMATIC NAME" ACDLabs              12.01 
;6-methyluridine 5'-(dihydrogen phosphate)
;
U6M "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4R,5R)-5-[6-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
U6M "Create component" 2013-10-29 PDBJ 
U6M "Initial release"  2013-12-04 RCSB 
# 
