data_SHM
#

_chem_comp.id                                   SHM
_chem_comp.name                                 HOMOBIOTIN
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H18 N2 O3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "6-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL-4-YL)-HEXANOIC ACID"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2002-04-10
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       258.337
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SHM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1LCW
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SHM  C1    C1   C  0  1  N  N  R   -4.680  34.414  10.153   0.672  -0.368  -4.003  C1    SHM   1  
SHM  C2    C2   C  0  1  N  N  S   -5.976  34.489  10.974   0.023  -1.142  -2.851  C2    SHM   2  
SHM  N3    N3   N  0  1  N  N  N   -5.676  35.566  11.929  -1.337  -0.586  -2.770  N3    SHM   3  
SHM  C4    C4   C  0  1  N  N  N   -4.434  36.058  11.732  -1.480   0.357  -3.711  C4    SHM   4  
SHM  N5    N5   N  0  1  N  N  N   -3.807  35.438  10.718  -0.385   0.547  -4.460  N5    SHM   5  
SHM  C6    C6   C  0  1  N  N  S   -6.220  33.080  11.648   0.731  -0.942  -1.494  C6    SHM   6  
SHM  S7    S7   S  0  1  N  N  N   -4.525  32.445  11.873   1.603   0.661  -1.770  S7    SHM   7  
SHM  C8    C8   C  0  1  N  N  N   -3.985  33.019  10.225   1.905   0.457  -3.579  C8    SHM   8  
SHM  C9    C9   C  0  1  N  N  N   -7.065  33.120  12.957  -0.284  -0.826  -0.356  C9    SHM   9  
SHM  C10   C10  C  0  1  N  N  N   -7.505  31.740  13.462   0.449  -0.547   0.956  C10   SHM  10  
SHM  C11   C11  C  0  1  N  N  N   -8.758  31.841  14.342  -0.566  -0.431   2.094  C11   SHM  11  
SHM  C12   C12  C  0  1  N  N  N   -9.007  30.503  15.084   0.167  -0.152   3.407  C12   SHM  12  
SHM  C13   C13  C  0  1  N  N  N   -9.242  29.332  14.084  -0.848  -0.036   4.545  C13   SHM  13  
SHM  C14   C14  C  0  1  N  N  N  -10.569  29.436  13.348  -0.125   0.237   5.838  C14   SHM  14  
SHM  O15   O15  O  0  1  N  N  N  -10.897  28.483  12.441   1.078   0.330   5.849  O15   SHM  15  
SHM  O16   O16  O  0  1  N  N  N  -11.361  30.354  13.539  -0.819   0.378   6.978  O16   SHM  16  
SHM  O17   O17  O  0  1  N  N  N   -3.935  36.965  12.399  -2.510   0.983  -3.871  O17   SHM  17  
SHM  H11   H11  H  0  1  N  N  N   -4.903  34.574   9.072   0.941  -1.057  -4.804  H11   SHM  18  
SHM  H12   H12  H  0  1  N  N  N   -6.911  34.706  10.407  -0.020  -2.204  -3.092  H12   SHM  19  
SHM  HN3   HN3  H  0  1  N  N  N   -5.811  35.262  12.893  -2.019  -0.859  -2.138  HN3   SHM  20  
SHM  HN5   HN5  H  0  1  N  N  N   -2.861  35.693  10.435  -0.303   1.186  -5.185  HN5   SHM  21  
SHM  H6    H6   H  0  1  N  N  N   -6.855  32.413  11.019   1.442  -1.745  -1.301  H6    SHM  22  
SHM  H81   H81  H  0  1  N  N  N   -2.883  33.024  10.057   1.923   1.423  -4.084  H81   SHM  23  
SHM  H82   H82  H  0  1  N  N  N   -4.209  32.328   9.380   2.827  -0.094  -3.762  H82   SHM  24  
SHM  H11A  1H1  H  0  0  N  N  N   -7.948  33.790  12.832  -0.841  -1.759  -0.270  H11A  SHM  25  
SHM  H21   1H2  H  0  1  N  N  N   -6.520  33.673  13.757  -0.974  -0.009  -0.567  H21   SHM  26  
SHM  H12A  2H1  H  0  0  N  N  N   -6.676  31.214  13.990   1.006   0.385   0.870  H12A  SHM  27  
SHM  H22   2H2  H  0  1  N  N  N   -7.653  31.024  12.620   1.139  -1.364   1.167  H22   SHM  28  
SHM  H13   3H1  H  0  1  N  N  N   -9.651  32.164  13.757  -1.123  -1.364   2.180  H13   SHM  29  
SHM  H23   3H2  H  0  1  N  N  N   -8.701  32.703  15.048  -1.256   0.385   1.883  H23   SHM  30  
SHM  H14   4H1  H  0  1  N  N  N   -9.845  30.591  15.814   0.724   0.780   3.321  H14   SHM  31  
SHM  H24   4H2  H  0  1  N  N  N   -8.181  30.272  15.797   0.857  -0.969   3.618  H24   SHM  32  
SHM  H15   5H1  H  0  1  N  N  N   -9.147  28.346  14.596  -1.406  -0.969   4.631  H15   SHM  33  
SHM  H25   5H2  H  0  1  N  N  N   -8.394  29.246  13.365  -1.539   0.780   4.334  H25   SHM  34  
SHM  H16   H16  H  0  1  N  N  N  -12.190  30.419  13.079  -0.355   0.554   7.808  H16   SHM  35  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SHM  C1   C2    SING  N  N   1  
SHM  C1   N5    SING  N  N   2  
SHM  C1   C8    SING  N  N   3  
SHM  C1   H11   SING  N  N   4  
SHM  C2   N3    SING  N  N   5  
SHM  C2   C6    SING  N  N   6  
SHM  C2   H12   SING  N  N   7  
SHM  N3   C4    SING  N  N   8  
SHM  N3   HN3   SING  N  N   9  
SHM  C4   N5    SING  N  N  10  
SHM  C4   O17   DOUB  N  N  11  
SHM  N5   HN5   SING  N  N  12  
SHM  C6   S7    SING  N  N  13  
SHM  C6   C9    SING  N  N  14  
SHM  C6   H6    SING  N  N  15  
SHM  S7   C8    SING  N  N  16  
SHM  C8   H81   SING  N  N  17  
SHM  C8   H82   SING  N  N  18  
SHM  C9   C10   SING  N  N  19  
SHM  C9   H11A  SING  N  N  20  
SHM  C9   H21   SING  N  N  21  
SHM  C10  C11   SING  N  N  22  
SHM  C10  H12A  SING  N  N  23  
SHM  C10  H22   SING  N  N  24  
SHM  C11  C12   SING  N  N  25  
SHM  C11  H13   SING  N  N  26  
SHM  C11  H23   SING  N  N  27  
SHM  C12  C13   SING  N  N  28  
SHM  C12  H14   SING  N  N  29  
SHM  C12  H24   SING  N  N  30  
SHM  C13  C14   SING  N  N  31  
SHM  C13  H15   SING  N  N  32  
SHM  C13  H25   SING  N  N  33  
SHM  C14  O15   DOUB  N  N  34  
SHM  C14  O16   SING  N  N  35  
SHM  O16  H16   SING  N  N  36  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SHM  SMILES            ACDLabs               10.04  "O=C1NC2C(SCC2N1)CCCCCC(=O)O"  
SHM  SMILES_CANONICAL  CACTVS                3.341  "OC(=O)CCCCC[C@@H]1SC[C@@H]2NC(=O)N[C@H]12"  
SHM  SMILES            CACTVS                3.341  "OC(=O)CCCCC[CH]1SC[CH]2NC(=O)N[CH]12"  
SHM  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1[C@H]2[C@@H]([C@@H](S1)CCCCCC(=O)O)NC(=O)N2"  
SHM  SMILES            "OpenEye OEToolkits"  1.5.0  "C1C2C(C(S1)CCCCCC(=O)O)NC(=O)N2"  
SHM  InChI             InChI                 1.03   "InChI=1S/C11H18N2O3S/c14-9(15)5-3-1-2-4-8-10-7(6-17-8)12-11(16)13-10/h7-8,10H,1-6H2,(H,14,15)(H2,12,13,16)/t7-,8-,10-/m0/s1"  
SHM  InChIKey          InChI                 1.03   CUIOUBJXOZHWNJ-NRPADANISA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SHM  "SYSTEMATIC NAME"  ACDLabs               10.04  "6-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]hexanoic acid"  
SHM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "6-[(3aR,6S,6aS)-2-oxo-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-6-yl]hexanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SHM  "Create component"   2002-04-10  RCSB  
SHM  "Modify descriptor"  2011-06-04  RCSB  
SHM  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     SHM
_pdbx_chem_comp_synonyms.name        "6-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL-4-YL)-HEXANOIC ACID"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
