data_S8M
# 
_chem_comp.id                                    S8M 
_chem_comp.name                                  "(2~{R},3~{R},4~{S},5~{S})-2-(6-aminopurin-9-yl)-5-[[(3~{S})-3-azanyl-3-(1~{H}-1,2,3,4-tetrazol-5-yl)propyl]sulfanylmethyl]oxolane-3,4-diol" 
_chem_comp.type                                  "RNA linking" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C14 H20 N10 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-10-23 
_chem_comp.pdbx_modified_date                    2015-12-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        408.439 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     S8M 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5EEG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
S8M C01 C1  C 0 1 Y N N -30.817 -26.731 -2.355  6.802  -0.479 0.889  C01 S8M 1  
S8M N02 N1  N 0 1 Y N N -30.682 -25.767 -3.265  5.601  0.058  0.836  N02 S8M 2  
S8M C03 C2  C 0 1 Y N N -29.587 -24.985 -3.319  4.591  -0.595 0.272  C03 S8M 3  
S8M C04 C3  C 0 1 Y N N -28.563 -25.234 -2.387  4.821  -1.872 -0.269 C04 S8M 4  
S8M C05 C4  C 0 1 Y N N -28.739 -26.297 -1.421  6.119  -2.403 -0.188 C05 S8M 5  
S8M N06 N2  N 0 1 Y N N -29.876 -26.991 -1.450  7.066  -1.675 0.395  N06 S8M 6  
S8M N07 N3  N 0 1 N N N -27.723 -26.606 -0.414  6.405  -3.655 -0.703 N07 S8M 7  
S8M N08 N4  N 0 1 Y N N -27.566 -24.324 -2.667  3.642  -2.309 -0.775 N08 S8M 8  
S8M C09 C5  C 0 1 Y N N -27.937 -23.559 -3.724  2.727  -1.405 -0.583 C09 S8M 9  
S8M N10 N5  N 0 1 Y N N -29.170 -23.963 -4.135  3.262  -0.328 0.059  N10 S8M 10 
S8M C11 C6  C 0 1 N N R -29.902 -23.417 -5.216  2.550  0.891  0.451  C11 S8M 11 
S8M C12 C7  C 0 1 N N R -30.016 -21.915 -5.156  2.716  1.991  -0.628 C12 S8M 12 
S8M C13 C8  C 0 1 N N S -30.107 -21.466 -6.565  1.464  2.870  -0.390 C13 S8M 13 
S8M C14 C9  C 0 1 N N S -29.648 -22.656 -7.380  0.489  1.943  0.362  C14 S8M 14 
S8M O15 O1  O 0 1 N N N -29.160 -23.639 -6.420  1.125  0.659  0.480  O15 S8M 15 
S8M C16 C10 C 0 1 N N N -28.622 -22.324 -8.372  -0.814 1.807  -0.428 C16 S8M 16 
S8M S17 S1  S 0 1 N N N -29.163 -21.118 -9.573  -2.006 0.836  0.535  S17 S8M 17 
S8M C18 C11 C 0 1 N N N -29.823 -21.998 -10.969 -3.461 0.786  -0.548 C18 S8M 18 
S8M C19 C12 C 0 1 N N N -31.392 -22.007 -10.766 -4.576 -0.011 0.132  C19 S8M 19 
S8M C20 C13 C 0 1 N N S -32.177 -22.768 -11.801 -5.802 -0.054 -0.781 C20 S8M 20 
S8M C21 C14 C 0 1 Y N N -31.830 -22.167 -13.150 -6.855 -0.940 -0.167 C21 S8M 21 
S8M N22 N6  N 0 1 Y N N -31.472 -22.824 -14.241 -8.130 -0.604 0.103  N22 S8M 22 
S8M N23 N7  N 0 1 Y N N -31.262 -21.907 -15.225 -8.695 -1.642 0.620  N23 S8M 23 
S8M N24 N8  N 0 1 Y N N -31.492 -20.661 -14.709 -7.833 -2.596 0.682  N24 S8M 24 
S8M N25 N9  N 0 1 Y N N -31.830 -20.804 -13.431 -6.709 -2.189 0.202  N25 S8M 25 
S8M N26 N10 N 0 1 N N N -31.823 -24.141 -11.802 -6.339 1.304  -0.944 N26 S8M 26 
S8M O27 O2  O 0 1 N N N -31.440 -21.126 -6.877  1.795  4.006  0.410  O27 S8M 27 
S8M O28 O3  O 0 1 N N N -31.182 -21.547 -4.404  3.913  2.740  -0.413 O28 S8M 28 
S8M H1  H1  H 0 1 N N N -31.721 -27.322 -2.352  7.602  0.081  1.351  H1  S8M 29 
S8M H2  H2  H 0 1 N N N -28.043 -27.357 0.164   5.706  -4.177 -1.127 H2  S8M 30 
S8M H3  H3  H 0 1 N N N -26.874 -26.875 -0.869  7.306  -4.011 -0.641 H3  S8M 31 
S8M H4  H4  H 0 1 N N N -27.353 -22.764 -4.165  1.694  -1.494 -0.887 H4  S8M 32 
S8M H5  H5  H 0 1 N N N -30.904 -23.865 -5.284  2.904  1.246  1.419  H5  S8M 33 
S8M H6  H6  H 0 1 N N N -29.111 -21.498 -4.690  2.704  1.559  -1.629 H6  S8M 34 
S8M H7  H7  H 0 1 N N N -29.430 -20.616 -6.736  1.033  3.185  -1.340 H7  S8M 35 
S8M H8  H8  H 0 1 N N N -30.523 -23.072 -7.901  0.284  2.348  1.353  H8  S8M 36 
S8M H9  H9  H 0 1 N N N -28.340 -23.245 -8.904  -1.225 2.797  -0.623 H9  S8M 37 
S8M H10 H10 H 0 1 N N N -27.744 -21.922 -7.845  -0.615 1.303  -1.373 H10 S8M 38 
S8M H11 H11 H 0 1 N N N -29.433 -23.026 -10.993 -3.806 1.802  -0.740 H11 S8M 39 
S8M H12 H12 H 0 1 N N N -29.560 -21.484 -11.905 -3.195 0.308  -1.491 H12 S8M 40 
S8M H13 H13 H 0 1 N N N -31.741 -20.964 -10.776 -4.231 -1.027 0.325  H13 S8M 41 
S8M H14 H14 H 0 1 N N N -31.604 -22.455 -9.784  -4.841 0.467  1.075  H14 S8M 42 
S8M H15 H15 H 0 1 N N N -33.253 -22.643 -11.612 -5.516 -0.450 -1.755 H15 S8M 43 
S8M H16 H16 H 0 1 N N N -31.373 -23.815 -14.327 -8.547 0.257  -0.061 H16 S8M 44 
S8M H17 H17 H 0 1 N N N -32.049 -24.545 -10.915 -7.111 1.313  -1.594 H17 S8M 45 
S8M H18 H18 H 0 1 N N N -32.329 -24.615 -12.523 -6.611 1.694  -0.054 H18 S8M 46 
S8M H20 H20 H 0 1 N N N -31.707 -20.378 -6.355  2.450  4.593  0.007  H20 S8M 47 
S8M H21 H21 H 0 1 N N N -31.090 -21.850 -3.508  4.061  3.440  -1.063 H21 S8M 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
S8M N23 N24 DOUB Y N 1  
S8M N23 N22 SING Y N 2  
S8M N24 N25 SING Y N 3  
S8M N22 C21 SING Y N 4  
S8M N25 C21 DOUB Y N 5  
S8M C21 C20 SING N N 6  
S8M N26 C20 SING N N 7  
S8M C20 C19 SING N N 8  
S8M C18 C19 SING N N 9  
S8M C18 S17 SING N N 10 
S8M S17 C16 SING N N 11 
S8M C16 C14 SING N N 12 
S8M C14 C13 SING N N 13 
S8M C14 O15 SING N N 14 
S8M O27 C13 SING N N 15 
S8M C13 C12 SING N N 16 
S8M O15 C11 SING N N 17 
S8M C11 C12 SING N N 18 
S8M C11 N10 SING N N 19 
S8M C12 O28 SING N N 20 
S8M N10 C09 SING Y N 21 
S8M N10 C03 SING Y N 22 
S8M C09 N08 DOUB Y N 23 
S8M C03 N02 DOUB Y N 24 
S8M C03 C04 SING Y N 25 
S8M N02 C01 SING Y N 26 
S8M N08 C04 SING Y N 27 
S8M C04 C05 DOUB Y N 28 
S8M C01 N06 DOUB Y N 29 
S8M N06 C05 SING Y N 30 
S8M C05 N07 SING N N 31 
S8M C01 H1  SING N N 32 
S8M N07 H2  SING N N 33 
S8M N07 H3  SING N N 34 
S8M C09 H4  SING N N 35 
S8M C11 H5  SING N N 36 
S8M C12 H6  SING N N 37 
S8M C13 H7  SING N N 38 
S8M C14 H8  SING N N 39 
S8M C16 H9  SING N N 40 
S8M C16 H10 SING N N 41 
S8M C18 H11 SING N N 42 
S8M C18 H12 SING N N 43 
S8M C19 H13 SING N N 44 
S8M C19 H14 SING N N 45 
S8M C20 H15 SING N N 46 
S8M N22 H16 SING N N 47 
S8M N26 H17 SING N N 48 
S8M N26 H18 SING N N 49 
S8M O27 H20 SING N N 50 
S8M O28 H21 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
S8M InChI            InChI                1.03  "InChI=1S/C14H20N10O3S/c15-6(12-20-22-23-21-12)1-2-28-3-7-9(25)10(26)14(27-7)24-5-19-8-11(16)17-4-18-13(8)24/h4-7,9-10,14,25-26H,1-3,15H2,(H2,16,17,18)(H,20,21,22,23)/t6-,7+,9+,10+,14+/m0/s1" 
S8M InChIKey         InChI                1.03  PRVMDGXUVZTDPT-XLZJSAHRSA-N                                                                                                                                                                     
S8M SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CCSC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)c4[nH]nnn4"                                                                                                                         
S8M SMILES           CACTVS               3.385 "N[CH](CCSC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)c4[nH]nnn4"                                                                                                                                
S8M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CSCC[C@@H](c4[nH]nnn4)N)O)O)N"                                                                                                                  
S8M SMILES           "OpenEye OEToolkits" 2.0.4 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CSCCC(c4[nH]nnn4)N)O)O)N"                                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
S8M "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(2~{R},3~{R},4~{S},5~{S})-2-(6-aminopurin-9-yl)-5-[[(3~{S})-3-azanyl-3-(1~{H}-1,2,3,4-tetrazol-5-yl)propyl]sulfanylmethyl]oxolane-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
S8M "Create component" 2015-10-23 RCSB 
S8M "Initial release"  2015-12-23 RCSB 
# 
