data_S5M
#

_chem_comp.id                                   S5M
_chem_comp.name                                 "4-~{tert}-butyl-~{N}-[[4-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)phenyl]methyl]benzamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H24 N4 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-03-04
_chem_comp.pdbx_modified_date                   2020-12-11
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       384.474
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    S5M
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6W06
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S5M  N1   N1   N  0  1  Y  N  N   0.452  18.068   4.866  -7.248   0.942   0.920  N1   S5M   1  
S5M  N3   N2   N  0  1  N  N  N   6.540  23.483   9.224   1.361  -1.668  -0.273  N3   S5M   2  
S5M  C4   C1   C  0  1  Y  N  N   0.636  20.284   5.868  -5.196   0.974  -0.238  C4   S5M   3  
S5M  C5   C2   C  0  1  Y  N  N   2.023  20.099   5.997  -4.821  -0.192   0.451  C5   S5M   4  
S5M  C6   C3   C  0  1  Y  N  N   2.937  21.108   6.575  -3.504  -0.825   0.211  C6   S5M   5  
S5M  C7   C4   C  0  1  Y  N  N   4.052  20.719   7.309  -2.822  -1.441   1.261  C7   S5M   6  
S5M  C8   C5   C  0  1  Y  N  N   4.895  21.666   7.858  -1.595  -2.029   1.031  C8   S5M   7  
S5M  C10  C6   C  0  1  N  N  N   5.592  24.052   8.270   0.298  -2.655  -0.480  C10  S5M   8  
S5M  C13  C7   C  0  1  Y  N  N  10.053  22.562   9.639   5.060  -1.389  -0.396  C13  S5M   9  
S5M  C15  C8   C  0  1  Y  N  N  10.553  22.030  11.948   5.731   0.840   0.164  C15  S5M  10  
S5M  C17  C9   C  0  1  N  N  N  10.997  20.693  14.043   6.635   3.021  -0.596  C17  S5M  11  
S5M  C20  C10  C  0  1  Y  N  N   9.193  22.155  12.218   4.408   1.207   0.333  C20  S5M  12  
S5M  C21  C11  C  0  1  Y  N  N   8.277  22.466  11.229   3.403   0.282   0.139  C21  S5M  13  
S5M  C22  C12  C  0  1  Y  N  N   3.559  23.408   6.940  -1.716  -1.405  -1.283  C22  S5M  14  
S5M  C24  C13  C  0  1  Y  N  N   1.770  18.010   5.053  -6.854  -0.150   1.541  C24  S5M  15  
S5M  C1   C14  C  0  1  Y  N  N  -0.089  19.222   5.284  -6.461   1.537   0.028  C1   S5M  16  
S5M  C11  C15  C  0  1  N  N  N   7.735  23.036   8.837   2.651  -2.022  -0.436  C11  S5M  17  
S5M  C12  C16  C  0  1  Y  N  N   8.702  22.676   9.927   3.723  -1.026  -0.227  C12  S5M  18  
S5M  C14  C17  C  0  1  Y  N  N  10.961  22.252  10.637   6.056  -0.455  -0.199  C14  S5M  19  
S5M  C16  C18  C  0  1  N  N  N  11.565  21.710  13.051   6.824   1.856   0.377  C16  S5M  20  
S5M  C18  C19  C  0  1  N  N  N  11.916  22.987  13.820   6.763   2.377   1.815  C18  S5M  21  
S5M  C19  C20  C  0  1  N  N  N  12.857  21.146  12.455   8.184   1.201   0.130  C19  S5M  22  
S5M  C2   C21  C  0  1  Y  N  N  -1.534  20.838   5.770  -5.446   2.814  -1.513  C2   S5M  23  
S5M  C23  C22  C  0  1  Y  N  N   2.714  22.467   6.380  -2.943  -0.813  -1.066  C23  S5M  24  
S5M  C3   C23  C  0  1  Y  N  N  -0.318  21.306   6.172  -4.572   1.830  -1.242  C3   S5M  25  
S5M  C9   C24  C  0  1  Y  N  N   4.662  23.020   7.684  -1.041  -2.010  -0.236  C9   S5M  26  
S5M  N2   N3   N  0  1  Y  N  N  -1.405  19.576   5.233  -6.580   2.649  -0.761  N2   S5M  27  
S5M  N4   N4   N  0  1  Y  N  N   2.581  18.947   5.571  -5.680  -0.712   1.325  N4   S5M  28  
S5M  O1   O1   O  0  1  N  N  N   8.057  22.957   7.653   2.933  -3.161  -0.756  O1   S5M  29  
S5M  H1   H1   H  0  1  N  N  N   6.287  23.427  10.190   1.136  -0.760  -0.018  H1   S5M  30  
S5M  H2   H2   H  0  1  N  N  N   4.261  19.669   7.451  -3.253  -1.456   2.251  H2   S5M  31  
S5M  H3   H3   H  0  1  N  N  N   5.751  21.345   8.433  -1.066  -2.506   1.843  H3   S5M  32  
S5M  H4   H4   H  0  1  N  N  N   6.157  24.522   7.451   0.342  -3.026  -1.504  H4   S5M  33  
S5M  H5   H5   H  0  1  N  N  N   4.990  24.815   8.785   0.433  -3.485   0.213  H5   S5M  34  
S5M  H6   H6   H  0  1  N  N  N  10.400  22.716   8.628   5.315  -2.401  -0.675  H6   S5M  35  
S5M  H7   H7   H  0  1  N  N  N  11.745  20.483  14.822   5.666   3.488  -0.419  H7   S5M  36  
S5M  H8   H8   H  0  1  N  N  N  10.088  21.103  14.508   7.425   3.756  -0.442  H8   S5M  37  
S5M  H9   H9   H  0  1  N  N  N  10.750  19.762  13.512   6.678   2.650  -1.620  H9   S5M  38  
S5M  H10  H10  H  0  1  N  N  N   8.843  22.005  13.229   4.161   2.220   0.616  H10  S5M  39  
S5M  H11  H11  H  0  1  N  N  N   7.228  22.545  11.472   2.370   0.570   0.271  H11  S5M  40  
S5M  H12  H12  H  0  1  N  N  N   3.357  24.459   6.796  -1.278  -1.393  -2.270  H12  S5M  41  
S5M  H13  H13  H  0  1  N  N  N   2.248  17.091   4.749  -7.521  -0.605   2.259  H13  S5M  42  
S5M  H14  H14  H  0  1  N  N  N  12.010  22.181  10.392   7.091  -0.735  -0.329  H14  S5M  43  
S5M  H15  H15  H  0  1  N  N  N  12.643  22.751  14.611   6.898   1.546   2.508  H15  S5M  44  
S5M  H16  H16  H  0  1  N  N  N  12.352  23.723  13.129   7.554   3.111   1.969  H16  S5M  45  
S5M  H17  H17  H  0  1  N  N  N  11.005  23.404  14.273   5.794   2.843   1.991  H17  S5M  46  
S5M  H18  H18  H  0  1  N  N  N  13.568  20.924  13.264   8.228   0.830  -0.894  H18  S5M  47  
S5M  H19  H19  H  0  1  N  N  N  12.632  20.223  11.901   8.975   1.935   0.284  H19  S5M  48  
S5M  H20  H20  H  0  1  N  N  N  13.299  21.886  11.772   8.319   0.370   0.823  H20  S5M  49  
S5M  H21  H21  H  0  1  N  N  N  -2.464  21.379   5.860  -5.281   3.614  -2.219  H21  S5M  50  
S5M  H22  H22  H  0  1  N  N  N   1.873  22.791   5.785  -3.468  -0.342  -1.883  H22  S5M  51  
S5M  H23  H23  H  0  1  N  N  N  -0.115  22.262   6.631  -3.594   1.699  -1.681  H23  S5M  52  
S5M  H24  H24  H  0  1  N  N  N  -2.149  19.016   4.868  -7.353   3.235  -0.784  H24  S5M  53  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S5M  N1   C24  DOUB  Y  N   1  
S5M  N1   C1   SING  Y  N   2  
S5M  C24  N4   SING  Y  N   3  
S5M  N2   C1   SING  Y  N   4  
S5M  N2   C2   SING  Y  N   5  
S5M  C1   C4   DOUB  Y  N   6  
S5M  N4   C5   DOUB  Y  N   7  
S5M  C2   C3   DOUB  Y  N   8  
S5M  C4   C5   SING  Y  N   9  
S5M  C4   C3   SING  Y  N  10  
S5M  C5   C6   SING  N  N  11  
S5M  C23  C6   DOUB  Y  N  12  
S5M  C23  C22  SING  Y  N  13  
S5M  C6   C7   SING  Y  N  14  
S5M  C22  C9   DOUB  Y  N  15  
S5M  C7   C8   DOUB  Y  N  16  
S5M  O1   C11  DOUB  N  N  17  
S5M  C9   C8   SING  Y  N  18  
S5M  C9   C10  SING  N  N  19  
S5M  C10  N3   SING  N  N  20  
S5M  C11  N3   SING  N  N  21  
S5M  C11  C12  SING  N  N  22  
S5M  C13  C12  DOUB  Y  N  23  
S5M  C13  C14  SING  Y  N  24  
S5M  C12  C21  SING  Y  N  25  
S5M  C14  C15  DOUB  Y  N  26  
S5M  C21  C20  DOUB  Y  N  27  
S5M  C15  C20  SING  Y  N  28  
S5M  C15  C16  SING  N  N  29  
S5M  C19  C16  SING  N  N  30  
S5M  C16  C18  SING  N  N  31  
S5M  C16  C17  SING  N  N  32  
S5M  N3   H1   SING  N  N  33  
S5M  C7   H2   SING  N  N  34  
S5M  C8   H3   SING  N  N  35  
S5M  C10  H4   SING  N  N  36  
S5M  C10  H5   SING  N  N  37  
S5M  C13  H6   SING  N  N  38  
S5M  C17  H7   SING  N  N  39  
S5M  C17  H8   SING  N  N  40  
S5M  C17  H9   SING  N  N  41  
S5M  C20  H10  SING  N  N  42  
S5M  C21  H11  SING  N  N  43  
S5M  C22  H12  SING  N  N  44  
S5M  C24  H13  SING  N  N  45  
S5M  C14  H14  SING  N  N  46  
S5M  C18  H15  SING  N  N  47  
S5M  C18  H16  SING  N  N  48  
S5M  C18  H17  SING  N  N  49  
S5M  C19  H18  SING  N  N  50  
S5M  C19  H19  SING  N  N  51  
S5M  C19  H20  SING  N  N  52  
S5M  C2   H21  SING  N  N  53  
S5M  C23  H22  SING  N  N  54  
S5M  C3   H23  SING  N  N  55  
S5M  N2   H24  SING  N  N  56  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S5M  InChI             InChI                 1.03   "InChI=1S/C24H24N4O/c1-24(2,3)19-10-8-18(9-11-19)23(29)26-14-16-4-6-17(7-5-16)21-20-12-13-25-22(20)28-15-27-21/h4-13,15H,14H2,1-3H3,(H,26,29)(H,25,27,28)"  
S5M  InChIKey          InChI                 1.03   ODLDMAFDYHTWSE-UHFFFAOYSA-N  
S5M  SMILES_CANONICAL  CACTVS                3.385  "CC(C)(C)c1ccc(cc1)C(=O)NCc2ccc(cc2)c3ncnc4[nH]ccc34"  
S5M  SMILES            CACTVS                3.385  "CC(C)(C)c1ccc(cc1)C(=O)NCc2ccc(cc2)c3ncnc4[nH]ccc34"  
S5M  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)(C)c1ccc(cc1)C(=O)NCc2ccc(cc2)c3c4cc[nH]c4ncn3"  
S5M  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)(C)c1ccc(cc1)C(=O)NCc2ccc(cc2)c3c4cc[nH]c4ncn3"  
#
_pdbx_chem_comp_identifier.comp_id          S5M
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "4-~{tert}-butyl-~{N}-[[4-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)phenyl]methyl]benzamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S5M  "Create component"  2020-03-04  RCSB  
S5M  "Initial release"   2020-12-16  RCSB  
##
