data_RKM
#

_chem_comp.id                                   RKM
_chem_comp.name                                 "(11-methyldipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C39 H24 N12 Ru"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2014-11-25
_chem_comp.pdbx_modified_date                   2015-05-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       761.758
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RKM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  Y
_chem_comp.pdbx_model_coordinates_db_code       4X18
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RKM  C14   C1   C   0  1  Y  N  N   5.347  28.477   6.118  ?  ?  ?  C14   RKM   1  
RKM  C13   C2   C   0  1  Y  N  N   5.058  27.195   5.703  ?  ?  ?  C13   RKM   2  
RKM  N4    N1   N   0  1  Y  N  N   5.915  26.526   4.940  ?  ?  ?  N4    RKM   3  
RKM  C7    C3   C   0  1  Y  N  N   5.590  25.265   4.550  ?  ?  ?  C7    RKM   4  
RKM  C8    C4   C   0  1  Y  N  N   6.470  24.527   3.720  ?  ?  ?  C8    RKM   5  
RKM  C9    C5   C   0  1  Y  N  N   7.681  25.062   3.270  ?  ?  ?  C9    RKM   6  
RKM  C11   C6   C   0  1  Y  N  N   8.478  24.284   2.444  ?  ?  ?  C11   RKM   7  
RKM  C12   C7   C   0  1  Y  N  N   8.098  23.020   2.069  ?  ?  ?  C12   RKM   8  
RKM  C10   C8   C   0  1  Y  N  N   6.128  23.214   3.332  ?  ?  ?  C10   RKM   9  
RKM  N1    N2   N   0  1  Y  N  N   6.904  22.491   2.445  ?  ?  ?  N1    RKM  10  
RKM  C18   C9   C   0  1  Y  N  N   4.453  29.132   6.933  ?  ?  ?  C18   RKM  11  
RKM  C17   C10  C   0  1  Y  N  N   3.234  28.593   7.332  ?  ?  ?  C17   RKM  12  
RKM  C16   C11  C   0  1  Y  N  N   2.905  27.327   6.947  ?  ?  ?  C16   RKM  13  
RKM  C15   C12  C   0  1  Y  N  N   3.803  26.630   6.135  ?  ?  ?  C15   RKM  14  
RKM  N3    N3   N   0  1  Y  N  N   3.491  25.381   5.718  ?  ?  ?  N3    RKM  15  
RKM  C6    C13  C   0  1  Y  N  N   4.343  24.691   4.959  ?  ?  ?  C6    RKM  16  
RKM  C5    C14  C   0  1  Y  N  N   4.006  23.330   4.554  ?  ?  ?  C5    RKM  17  
RKM  C1    C15  C   0  1  Y  N  N   4.908  22.634   3.749  ?  ?  ?  C1    RKM  18  
RKM  C4    C16  C   0  1  Y  N  N   2.841  22.688   4.938  ?  ?  ?  C4    RKM  19  
RKM  C3    C17  C   0  1  Y  N  N   2.606  21.377   4.523  ?  ?  ?  C3    RKM  20  
RKM  C2    C18  C   0  1  Y  N  N   3.554  20.743   3.757  ?  ?  ?  C2    RKM  21  
RKM  N2    N4   N   0  1  Y  N  N   4.735  21.307   3.390  ?  ?  ?  N2    RKM  22  
RKM  RU    RU1  RU  0  0  N  N  N   6.202  20.590   2.170  ?  ?  ?  RU    RKM  23  
RKM  N12   N5   N   0  1  Y  N  N   5.520  18.650   2.117  ?  ?  ?  N12   RKM  24  
RKM  C36   C19  C   0  1  Y  N  N   6.120  17.864   3.092  ?  ?  ?  C36   RKM  25  
RKM  C38   C20  C   0  1  Y  N  N   4.632  18.026   1.383  ?  ?  ?  C38   RKM  26  
RKM  N5    N6   N   0  1  Y  N  N   5.227  21.138   0.514  ?  ?  ?  N5    RKM  27  
RKM  C20   C21  C   0  1  Y  N  N   3.988  21.508   0.190  ?  ?  ?  C20   RKM  28  
RKM  C21   C22  C   0  1  Y  N  N   3.558  21.838  -1.110  ?  ?  ?  C21   RKM  29  
RKM  N6    N7   N   0  1  Y  N  N   4.316  21.677  -2.168  ?  ?  ?  N6    RKM  30  
RKM  C19   C23  C   0  1  Y  N  N   5.976  20.904  -0.626  ?  ?  ?  C19   RKM  31  
RKM  C22   C24  C   0  1  Y  N  N   5.567  21.238  -1.969  ?  ?  ?  C22   RKM  32  
RKM  C23   C25  C   0  1  Y  N  N   6.462  21.023  -3.036  ?  ?  ?  C23   RKM  33  
RKM  C24   C26  C   0  1  Y  N  N   7.707  20.498  -2.856  ?  ?  ?  C24   RKM  34  
RKM  C25   C27  C   0  1  Y  N  N   8.105  20.149  -1.554  ?  ?  ?  C25   RKM  35  
RKM  N7    N8   N   0  1  Y  N  N   9.362  19.622  -1.357  ?  ?  ?  N7    RKM  36  
RKM  C27   C28  C   0  1  Y  N  N   9.738  19.358  -0.106  ?  ?  ?  C27   RKM  37  
RKM  C28   C29  C   0  1  Y  N  N   8.873  19.626   0.983  ?  ?  ?  C28   RKM  38  
RKM  C26   C30  C   0  1  Y  N  N   7.266  20.403  -0.428  ?  ?  ?  C26   RKM  39  
RKM  N8    N9   N   0  1  Y  N  N   7.646  20.062   0.856  ?  ?  ?  N8    RKM  40  
RKM  N9    N10  N   0  1  Y  N  N   7.235  19.884   3.759  ?  ?  ?  N9    RKM  41  
RKM  C29   C31  C   0  1  Y  N  N   7.049  18.523   3.939  ?  ?  ?  C29   RKM  42  
RKM  C30   C32  C   0  1  Y  N  N   8.135  20.433   4.556  ?  ?  ?  C30   RKM  43  
RKM  C31   C33  C   0  1  Y  N  N   8.786  19.733   5.579  ?  ?  ?  C31   RKM  44  
RKM  N10   N11  N   0  1  Y  N  N   8.616  18.427   5.797  ?  ?  ?  N10   RKM  45  
RKM  C32   C34  C   0  1  Y  N  N   7.736  17.815   4.975  ?  ?  ?  C32   RKM  46  
RKM  C33   C35  C   0  1  Y  N  N   7.482  16.423   5.085  ?  ?  ?  C33   RKM  47  
RKM  C34   C36  C   0  1  Y  N  N   6.585  15.809   4.240  ?  ?  ?  C34   RKM  48  
RKM  C35   C37  C   0  1  Y  N  N   5.864  16.517   3.254  ?  ?  ?  C35   RKM  49  
RKM  N11   N12  N   0  1  Y  N  N   4.966  15.892   2.437  ?  ?  ?  N11   RKM  50  
RKM  C37   C38  C   0  1  Y  N  N   4.381  16.653   1.537  ?  ?  ?  C37   RKM  51  
RKM  C39   C39  C   0  1  N  N  N   2.243  29.320   8.265  ?  ?  ?  C39   RKM  52  
RKM  H14   H1   H   0  1  N  N  N   6.262  28.960   5.808  ?  ?  ?  H14   RKM  53  
RKM  H9    H2   H   0  1  N  N  N   7.988  26.056   3.559  ?  ?  ?  H9    RKM  54  
RKM  H11   H3   H   0  1  N  N  N   9.417  24.681   2.088  ?  ?  ?  H11   RKM  55  
RKM  H12   H4   H   0  1  N  N  N   8.766  22.430   1.459  ?  ?  ?  H12   RKM  56  
RKM  H18   H5   H   0  1  N  N  N   4.712  30.120   7.283  ?  ?  ?  H18   RKM  57  
RKM  H16   H6   H   0  1  N  N  N   1.976  26.875   7.261  ?  ?  ?  H16   RKM  58  
RKM  H4    H7   H   0  1  N  N  N   2.118  23.200   5.556  ?  ?  ?  H4    RKM  59  
RKM  H3    H8   H   0  1  N  N  N   1.694  20.869   4.799  ?  ?  ?  H3    RKM  60  
RKM  H2    H9   H   0  1  N  N  N   3.348  19.736   3.426  ?  ?  ?  H2    RKM  61  
RKM  H38   H10  H   0  1  N  N  N   4.079  18.582   0.640  ?  ?  ?  H38   RKM  62  
RKM  H20   H11  H   0  1  N  N  N   3.258  21.559   0.985  ?  ?  ?  H20   RKM  63  
RKM  H21   H12  H   0  1  N  N  N   2.564  22.240  -1.241  ?  ?  ?  H21   RKM  64  
RKM  H23   H13  H   0  1  N  N  N   6.149  21.285  -4.036  ?  ?  ?  H23   RKM  65  
RKM  H24   H14  H   0  1  N  N  N   8.372  20.354  -3.694  ?  ?  ?  H24   RKM  66  
RKM  H27   H15  H   0  1  N  N  N  10.714  18.935   0.080  ?  ?  ?  H27   RKM  67  
RKM  H28   H16  H   0  1  N  N  N   9.250  19.460   1.981  ?  ?  ?  H28   RKM  68  
RKM  H30   H17  H   0  1  N  N  N   8.381  21.475   4.411  ?  ?  ?  H30   RKM  69  
RKM  H31   H18  H   0  1  N  N  N   9.460  20.277   6.224  ?  ?  ?  H31   RKM  70  
RKM  H33   H19  H   0  1  N  N  N   7.996  15.842   5.836  ?  ?  ?  H33   RKM  71  
RKM  H34   H20  H   0  1  N  N  N   6.427  14.745   4.335  ?  ?  ?  H34   RKM  72  
RKM  H37   H21  H   0  1  N  N  N   3.663  16.193   0.875  ?  ?  ?  H37   RKM  73  
RKM  H391  H22  H   0  0  N  N  N   1.525  29.895   7.662  ?  ?  ?  H391  RKM  74  
RKM  H39   H23  H   0  1  N  N  N   1.701  28.580   8.872  ?  ?  ?  H39   RKM  75  
RKM  H392  H24  H   0  0  N  N  N   2.796  30.003   8.927  ?  ?  ?  H392  RKM  76  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RKM  C23  C24   DOUB  Y  N   1  
RKM  C23  C22   SING  Y  N   2  
RKM  C24  C25   SING  Y  N   3  
RKM  N6   C22   SING  Y  N   4  
RKM  N6   C21   DOUB  Y  N   5  
RKM  C22  C19   DOUB  Y  N   6  
RKM  C25  N7    SING  Y  N   7  
RKM  C25  C26   DOUB  Y  N   8  
RKM  N7   C27   DOUB  Y  N   9  
RKM  C21  C20   SING  Y  N  10  
RKM  C19  C26   SING  Y  N  11  
RKM  C19  N5    SING  Y  N  12  
RKM  C26  N8    SING  Y  N  13  
RKM  C27  C28   SING  Y  N  14  
RKM  C20  N5    DOUB  Y  N  15  
RKM  N5   RU    SING  N  N  16  
RKM  N8   C28   DOUB  Y  N  17  
RKM  N8   RU    SING  N  N  18  
RKM  C38  C37   SING  Y  N  19  
RKM  C38  N12   DOUB  Y  N  20  
RKM  C37  N11   DOUB  Y  N  21  
RKM  C12  C11   SING  Y  N  22  
RKM  C12  N1    DOUB  Y  N  23  
RKM  N12  RU    SING  N  N  24  
RKM  N12  C36   SING  Y  N  25  
RKM  RU   N1    SING  N  N  26  
RKM  RU   N2    SING  N  N  27  
RKM  RU   N9    SING  N  N  28  
RKM  N11  C35   SING  Y  N  29  
RKM  C11  C9    DOUB  Y  N  30  
RKM  N1   C10   SING  Y  N  31  
RKM  C36  C35   DOUB  Y  N  32  
RKM  C36  C29   SING  Y  N  33  
RKM  C35  C34   SING  Y  N  34  
RKM  C9   C8    SING  Y  N  35  
RKM  C10  C8    DOUB  Y  N  36  
RKM  C10  C1    SING  Y  N  37  
RKM  N2   C1    SING  Y  N  38  
RKM  N2   C2    DOUB  Y  N  39  
RKM  C8   C7    SING  Y  N  40  
RKM  C1   C5    DOUB  Y  N  41  
RKM  C2   C3    SING  Y  N  42  
RKM  N9   C29   SING  Y  N  43  
RKM  N9   C30   DOUB  Y  N  44  
RKM  C29  C32   DOUB  Y  N  45  
RKM  C34  C33   DOUB  Y  N  46  
RKM  C3   C4    DOUB  Y  N  47  
RKM  C7   N4    SING  Y  N  48  
RKM  C7   C6    DOUB  Y  N  49  
RKM  C5   C4    SING  Y  N  50  
RKM  C5   C6    SING  Y  N  51  
RKM  C30  C31   SING  Y  N  52  
RKM  N4   C13   DOUB  Y  N  53  
RKM  C6   N3    SING  Y  N  54  
RKM  C32  C33   SING  Y  N  55  
RKM  C32  N10   SING  Y  N  56  
RKM  C31  N10   DOUB  Y  N  57  
RKM  C13  C14   SING  Y  N  58  
RKM  C13  C15   SING  Y  N  59  
RKM  N3   C15   DOUB  Y  N  60  
RKM  C14  C18   DOUB  Y  N  61  
RKM  C15  C16   SING  Y  N  62  
RKM  C18  C17   SING  Y  N  63  
RKM  C16  C17   DOUB  Y  N  64  
RKM  C17  C39   SING  N  N  65  
RKM  C14  H14   SING  N  N  66  
RKM  C9   H9    SING  N  N  67  
RKM  C11  H11   SING  N  N  68  
RKM  C12  H12   SING  N  N  69  
RKM  C18  H18   SING  N  N  70  
RKM  C16  H16   SING  N  N  71  
RKM  C4   H4    SING  N  N  72  
RKM  C3   H3    SING  N  N  73  
RKM  C2   H2    SING  N  N  74  
RKM  C38  H38   SING  N  N  75  
RKM  C20  H20   SING  N  N  76  
RKM  C21  H21   SING  N  N  77  
RKM  C23  H23   SING  N  N  78  
RKM  C24  H24   SING  N  N  79  
RKM  C27  H27   SING  N  N  80  
RKM  C28  H28   SING  N  N  81  
RKM  C30  H30   SING  N  N  82  
RKM  C31  H31   SING  N  N  83  
RKM  C33  H33   SING  N  N  84  
RKM  C34  H34   SING  N  N  85  
RKM  C37  H37   SING  N  N  86  
RKM  C39  H391  SING  N  N  87  
RKM  C39  H39   SING  N  N  88  
RKM  C39  H392  SING  N  N  89  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RKM  SMILES            ACDLabs               12.01  "n3c2ccc1nccnc1c2n(cc3)[Ru]9(n5c4c8c(c6nc7c(nc6c4ccc5)ccc(c7)C)cccn89)nccc(nccn)cccncc"  
RKM  InChI             InChI                 1.03   "InChI=1S/C19H12N4.2C10H6N4.Ru/c1-11-6-7-14-15(10-11)23-19-13-5-3-9-21-17(13)16-12(18(19)22-14)4-2-8-20-16;2*1-2-8-10(14-6-4-12-8)9-7(1)11-3-5-13-9;/h2-10H,1H3;2*1-6H;"  
RKM  InChIKey          InChI                 1.03   IUORKEDPZTZOCS-UHFFFAOYSA-N  
RKM  SMILES_CANONICAL  CACTVS                3.385  "[Ru].Cc1ccc2nc3c4cccnc4c5ncccc5c3nc2c1.c6cnc7c(ccc8nccnc78)n6.c9cncc(cccnccnc)n9"  
RKM  SMILES            CACTVS                3.385  "[Ru].Cc1ccc2nc3c4cccnc4c5ncccc5c3nc2c1.c6cnc7c(ccc8nccnc78)n6.c9cncc(cccnccnc)n9"  
RKM  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "Cc1ccc2c(c1)nc3c4c5c6c(c3n2)C=CC=[N]6[Ru]78([N]5=CC=C4)([N]9=CC=Nc1c9c2c(cc1)N=CC=[N]72)[N]1=CC=Nc2c1c1c(cc2)N=CC=[N]81"  
RKM  SMILES            "OpenEye OEToolkits"  1.9.2  "Cc1ccc2c(c1)nc3c4c5c6c(c3n2)C=CC=[N]6[Ru]78([N]5=CC=C4)([N]9=CC=Nc1c9c2c(cc1)N=CC=[N]72)[N]1=CC=Nc2c1c1c(cc2)N=CC=[N]81"  
#
_pdbx_chem_comp_identifier.comp_id          RKM
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  12.01
_pdbx_chem_comp_identifier.identifier       "(11-methyldipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RKM  "Create component"  2014-11-25  EBI   
RKM  "Initial release"   2015-05-13  RCSB  
##
