data_QCM
#

_chem_comp.id                                   QCM
_chem_comp.name                                 Givinostat
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H27 N3 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "{6-[(diethylamino)methyl]naphthalen-2-yl}methyl [4-(hydroxycarbamoyl)phenyl]carbamate"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-10-15
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       421.489
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    QCM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6UOC
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
QCM  C02   C1   C  0  1  N  N  N  -2.285  -19.575  25.962    8.865  -0.071  -0.084  C02   QCM   1  
QCM  C03   C2   C  0  1  Y  N  N  -2.413  -20.372  27.209    7.406  -0.237  -0.236  C03   QCM   2  
QCM  C04   C3   C  0  1  Y  N  N  -3.438  -21.300  27.475    6.876  -1.480  -0.594  C04   QCM   3  
QCM  C05   C4   C  0  1  Y  N  N  -3.470  -22.093  28.611    5.515  -1.631  -0.735  C05   QCM   4  
QCM  C06   C5   C  0  1  Y  N  N  -2.458  -22.036  29.570    4.668  -0.548  -0.522  C06   QCM   5  
QCM  C08   C6   C  0  1  N  N  N  -1.424  -23.562  31.160    2.447  -0.036   0.145  C08   QCM   6  
QCM  C10   C7   C  0  1  N  N  N  -0.687  -25.166  32.771    0.273   0.493   0.978  C10   QCM   7  
QCM  C11   C8   C  0  1  Y  N  N   0.183  -24.413  33.730   -1.167   0.108   0.755  C11   QCM   8  
QCM  C12   C9   C  0  1  Y  N  N   1.405  -23.986  33.312   -1.909   0.789  -0.160  C12   QCM   9  
QCM  C13   C10  C  0  1  Y  N  N   2.289  -23.282  34.131   -3.252   0.433  -0.370  C13   QCM  10  
QCM  C14   C11  C  0  1  Y  N  N   1.960  -22.972  35.437   -3.813  -0.632   0.378  C14   QCM  11  
QCM  C15   C12  C  0  1  Y  N  N   2.897  -22.250  36.253   -5.156  -0.989   0.168  C15   QCM  12  
QCM  C16   C13  C  0  1  Y  N  N   4.125  -21.857  35.750   -5.898  -0.308  -0.748  C16   QCM  13  
QCM  C17   C14  C  0  1  N  N  N   5.149  -21.117  36.530   -7.338  -0.693  -0.970  C17   QCM  14  
QCM  C19   C15  C  0  1  N  N  N   5.922  -20.527  38.691   -8.163   1.508  -0.389  C19   QCM  15  
QCM  C20   C16  C  0  1  N  N  N   5.641  -19.903  40.057   -8.732   2.314   0.780  C20   QCM  16  
QCM  C21   C17  C  0  1  N  N  N   3.981  -19.324  37.610   -9.574  -0.435  -0.076  C21   QCM  17  
QCM  C22   C18  C  0  1  N  N  N   2.601  -19.317  38.272   -9.644  -1.737   0.723  C22   QCM  18  
QCM  C23   C19  C  0  1  Y  N  N   4.416  -22.192  34.422   -5.347   0.739  -1.483  C23   QCM  19  
QCM  C24   C20  C  0  1  Y  N  N   3.548  -22.872  33.645   -4.049   1.112  -1.306  C24   QCM  20  
QCM  C25   C21  C  0  1  Y  N  N   0.672  -23.410  35.890   -3.015  -1.312   1.314  C25   QCM  21  
QCM  C26   C22  C  0  1  Y  N  N  -0.173  -24.105  35.059   -1.717  -0.943   1.487  C26   QCM  22  
QCM  C28   C23  C  0  1  Y  N  N  -1.427  -21.136  29.290    5.192   0.690  -0.166  C28   QCM  23  
QCM  C29   C24  C  0  1  Y  N  N  -1.396  -20.351  28.170    6.552   0.847  -0.018  C29   QCM  24  
QCM  N07   N1   N  0  1  N  N  N  -2.481  -22.828  30.664    3.289  -0.705  -0.667  N07   QCM  25  
QCM  N18   N2   N  0  1  N  N  N   4.689  -20.647  37.820   -8.197   0.077  -0.060  N18   QCM  26  
QCM  N30   N3   N  0  1  N  N  N  -2.861  -20.155  24.819    9.374   1.128   0.261  N30   QCM  27  
QCM  O01   O1   O  0  1  N  N  N  -1.594  -18.599  25.838    9.606  -1.018  -0.264  O01   QCM  28  
QCM  O09   O2   O  0  1  N  N  N  -1.680  -24.424  32.173    1.121  -0.263   0.073  O09   QCM  29  
QCM  O27   O3   O  0  1  N  N  N  -0.262  -23.474  30.737    2.882   0.772   0.940  O27   QCM  30  
QCM  O31   O4   O  0  1  N  N  N  -2.758  -19.578  23.597   10.774   1.287   0.408  O31   QCM  31  
QCM  H041  H1   H  0  0  N  N  N  -4.239  -21.399  26.758    7.534  -2.320  -0.760  H041  QCM  32  
QCM  H051  H2   H  0  0  N  N  N  -4.298  -22.771  28.758    5.105  -2.591  -1.011  H051  QCM  33  
QCM  H101  H3   H  0  0  N  N  N  -1.163  -25.992  33.320    0.398   1.559   0.787  H101  QCM  34  
QCM  H102  H4   H  0  0  N  N  N  -0.044  -25.576  31.978    0.553   0.273   2.008  H102  QCM  35  
QCM  H121  H5   H  0  0  N  N  N   1.706  -24.202  32.297   -1.468   1.599  -0.722  H121  QCM  36  
QCM  H151  H6   H  0  0  N  N  N   2.639  -22.010  37.274   -5.597  -1.799   0.730  H151  QCM  37  
QCM  H171  H7   H  0  0  N  N  N   6.008  -21.785  36.693   -7.617  -0.478  -2.001  H171  QCM  38  
QCM  H172  H8   H  0  0  N  N  N   5.469  -20.246  35.940   -7.464  -1.758  -0.774  H172  QCM  39  
QCM  H191  H9   H  0  0  N  N  N   6.339  -21.533  38.846   -8.762   1.690  -1.282  H191  QCM  40  
QCM  H192  H10  H  0  0  N  N  N   6.660  -19.902  38.167   -7.133   1.814  -0.574  H192  QCM  41  
QCM  H201  H11  H  0  0  N  N  N   6.576  -19.847  40.634   -8.124   2.145   1.668  H201  QCM  42  
QCM  H202  H12  H  0  0  N  N  N   5.233  -18.891  39.921   -8.722   3.375   0.529  H202  QCM  43  
QCM  H203  H13  H  0  0  N  N  N   4.912  -20.522  40.600   -9.757   1.997   0.975  H203  QCM  44  
QCM  H211  H14  H  0  0  N  N  N   4.591  -18.519  38.046   -9.879  -0.623  -1.106  H211  QCM  45  
QCM  H212  H15  H  0  0  N  N  N   3.861  -19.150  36.531  -10.241   0.303   0.371  H212  QCM  46  
QCM  H221  H16  H  0  0  N  N  N   2.116  -18.345  38.100   -9.412  -1.534   1.769  H221  QCM  47  
QCM  H223  H17  H  0  0  N  N  N   1.982  -20.116  37.838  -10.647  -2.156   0.648  H223  QCM  48  
QCM  H222  H18  H  0  0  N  N  N   2.712  -19.485  39.353   -8.922  -2.449   0.323  H222  QCM  49  
QCM  H231  H19  H  0  0  N  N  N   5.368  -21.896  34.006   -5.957   1.262  -2.203  H231  QCM  50  
QCM  H241  H20  H  0  0  N  N  N   3.823  -23.108  32.628   -3.636   1.926  -1.883  H241  QCM  51  
QCM  H251  H21  H  0  0  N  N  N   0.361  -23.190  36.901   -3.429  -2.126   1.891  H251  QCM  52  
QCM  H261  H22  H  0  0  N  N  N  -1.135  -24.424  35.433   -1.105  -1.470   2.203  H261  QCM  53  
QCM  H281  H23  H  0  0  N  N  N  -0.612  -21.056  29.994    4.531   1.529  -0.002  H281  QCM  54  
QCM  H291  H24  H  0  0  N  N  N  -0.555  -19.690  28.022    6.958   1.808   0.263  H291  QCM  55  
QCM  H071  H25  H  0  0  N  N  N  -3.346  -22.888  31.161    2.938  -1.295  -1.351  H071  QCM  56  
QCM  H301  H27  H  0  0  N  N  N  -3.360  -21.017  24.910    8.783   1.882   0.409  H301  QCM  57  
QCM  H311  H28  H  0  0  N  N  N  -2.224  -18.795  23.660   11.044   2.181   0.657  H311  QCM  58  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
QCM  O31  N30   SING  N  N   1  
QCM  N30  C02   SING  N  N   2  
QCM  O01  C02   DOUB  N  N   3  
QCM  C02  C03   SING  N  N   4  
QCM  C03  C04   DOUB  Y  N   5  
QCM  C03  C29   SING  Y  N   6  
QCM  C04  C05   SING  Y  N   7  
QCM  C29  C28   DOUB  Y  N   8  
QCM  C05  C06   DOUB  Y  N   9  
QCM  C28  C06   SING  Y  N  10  
QCM  C06  N07   SING  N  N  11  
QCM  N07  C08   SING  N  N  12  
QCM  O27  C08   DOUB  N  N  13  
QCM  C08  O09   SING  N  N  14  
QCM  O09  C10   SING  N  N  15  
QCM  C10  C11   SING  N  N  16  
QCM  C12  C11   DOUB  Y  N  17  
QCM  C12  C13   SING  Y  N  18  
QCM  C24  C13   DOUB  Y  N  19  
QCM  C24  C23   SING  Y  N  20  
QCM  C11  C26   SING  Y  N  21  
QCM  C13  C14   SING  Y  N  22  
QCM  C23  C16   DOUB  Y  N  23  
QCM  C26  C25   DOUB  Y  N  24  
QCM  C14  C25   SING  Y  N  25  
QCM  C14  C15   DOUB  Y  N  26  
QCM  C16  C15   SING  Y  N  27  
QCM  C16  C17   SING  N  N  28  
QCM  C17  N18   SING  N  N  29  
QCM  C21  N18   SING  N  N  30  
QCM  C21  C22   SING  N  N  31  
QCM  N18  C19   SING  N  N  32  
QCM  C19  C20   SING  N  N  33  
QCM  C04  H041  SING  N  N  34  
QCM  C05  H051  SING  N  N  35  
QCM  C10  H101  SING  N  N  36  
QCM  C10  H102  SING  N  N  37  
QCM  C12  H121  SING  N  N  38  
QCM  C15  H151  SING  N  N  39  
QCM  C17  H171  SING  N  N  40  
QCM  C17  H172  SING  N  N  41  
QCM  C19  H191  SING  N  N  42  
QCM  C19  H192  SING  N  N  43  
QCM  C20  H201  SING  N  N  44  
QCM  C20  H202  SING  N  N  45  
QCM  C20  H203  SING  N  N  46  
QCM  C21  H211  SING  N  N  47  
QCM  C21  H212  SING  N  N  48  
QCM  C22  H221  SING  N  N  49  
QCM  C22  H223  SING  N  N  50  
QCM  C22  H222  SING  N  N  51  
QCM  C23  H231  SING  N  N  52  
QCM  C24  H241  SING  N  N  53  
QCM  C25  H251  SING  N  N  54  
QCM  C26  H261  SING  N  N  55  
QCM  C28  H281  SING  N  N  56  
QCM  C29  H291  SING  N  N  57  
QCM  N07  H071  SING  N  N  58  
QCM  N30  H301  SING  N  N  59  
QCM  O31  H311  SING  N  N  60  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
QCM  SMILES            ACDLabs               12.01  "C(c3ccc(NC(OCc1ccc2c(c1)ccc(c2)CN(CC)CC)=O)cc3)(NO)=O"  
QCM  InChI             InChI                 1.03   "InChI=1S/C24H27N3O4/c1-3-27(4-2)15-17-5-7-21-14-18(6-8-20(21)13-17)16-31-24(29)25-22-11-9-19(10-12-22)23(28)26-30/h5-14,30H,3-4,15-16H2,1-2H3,(H,25,29)(H,26,28)"  
QCM  InChIKey          InChI                 1.03   YALNUENQHAQXEA-UHFFFAOYSA-N  
QCM  SMILES_CANONICAL  CACTVS                3.385  "CCN(CC)Cc1ccc2cc(COC(=O)Nc3ccc(cc3)C(=O)NO)ccc2c1"  
QCM  SMILES            CACTVS                3.385  "CCN(CC)Cc1ccc2cc(COC(=O)Nc3ccc(cc3)C(=O)NO)ccc2c1"  
QCM  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCN(CC)Cc1ccc2cc(ccc2c1)COC(=O)Nc3ccc(cc3)C(=O)NO"  
QCM  SMILES            "OpenEye OEToolkits"  2.0.7  "CCN(CC)Cc1ccc2cc(ccc2c1)COC(=O)Nc3ccc(cc3)C(=O)NO"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
QCM  "SYSTEMATIC NAME"  ACDLabs               12.01  "{6-[(diethylamino)methyl]naphthalen-2-yl}methyl [4-(hydroxycarbamoyl)phenyl]carbamate"  
QCM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "[6-(diethylaminomethyl)naphthalen-2-yl]methyl ~{N}-[4-(oxidanylcarbamoyl)phenyl]carbamate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
QCM  "Create component"  2019-10-15  RCSB  
QCM  "Initial release"   2019-12-04  RCSB  
QCM  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     QCM
_pdbx_chem_comp_synonyms.name        "{6-[(diethylamino)methyl]naphthalen-2-yl}methyl [4-(hydroxycarbamoyl)phenyl]carbamate"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
