data_PUM
#

_chem_comp.id                                   PUM
_chem_comp.name                                 "(1S)-1,4-anhydro-5-[(N-carbamimidoylglycyl-N~2~-hydroxy-L-glutaminyl)amino]-5-deoxy-1-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)-D-ribitol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H26 N8 O9"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        pseudouridimycin
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-02-13
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       486.437
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    PUM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5X21
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PUM  OAH  O1   O  0  1  N  N  N  -3.216   0.268  78.351   3.506  -0.151   2.014  OAH  PUM   1  
PUM  CBB  C1   C  0  1  N  N  N  -2.639  -0.600  78.988   4.327   0.590   1.504  CBB  PUM   2  
PUM  NAT  N1   N  0  1  N  N  N  -1.958  -1.634  78.302   4.894   1.577   2.227  NAT  PUM   3  
PUM  CBA  C2   C  0  1  N  N  N  -1.284  -2.650  79.038   5.801   2.395   1.662  CBA  PUM   4  
PUM  OAG  O2   O  0  1  N  N  N  -0.694  -3.542  78.448   6.304   3.282   2.326  OAG  PUM   5  
PUM  NAS  N2   N  0  1  N  N  N  -1.292  -2.623  80.475   6.160   2.247   0.374  NAS  PUM   6  
PUM  CAL  C3   C  0  1  N  N  N  -1.989  -1.557  81.175   5.608   1.257  -0.394  CAL  PUM   7  
PUM  CAZ  C4   C  0  1  N  N  N  -2.651  -0.570  80.469   4.699   0.419   0.149  CAZ  PUM   8  
PUM  CBG  C5   C  0  1  N  N  S  -3.369   0.527  81.225   4.085  -0.681  -0.678  CBG  PUM   9  
PUM  OAU  O3   O  0  1  N  N  N  -2.915   0.567  82.566   2.644  -0.606  -0.626  OAU  PUM  10  
PUM  CBD  C6   C  0  1  N  N  R  -4.838   0.356  81.175   4.431  -2.062  -0.078  CBD  PUM  11  
PUM  OAJ  O4   O  0  1  N  N  N  -5.467   1.582  81.015   5.533  -2.649  -0.773  OAJ  PUM  12  
PUM  CBC  C7   C  0  1  N  N  S  -5.128  -0.242  82.467   3.148  -2.897  -0.295  CBC  PUM  13  
PUM  OAI  O5   O  0  1  N  N  N  -6.389   0.042  82.931   3.419  -4.024  -1.130  OAI  PUM  14  
PUM  CBE  C8   C  0  1  N  N  R  -4.095   0.397  83.321   2.180  -1.921  -1.000  CBE  PUM  15  
PUM  CAP  C9   C  0  1  N  N  N  -3.778  -0.403  84.584   0.749  -2.141  -0.507  CAP  PUM  16  
PUM  NAR  N3   N  0  1  N  N  N  -2.915  -1.535  84.230  -0.158  -1.237  -1.219  NAR  PUM  17  
PUM  C    C10  C  0  1  N  N  N  -3.466  -2.729  83.978  -1.478  -1.255  -0.947  C    PUM  18  
PUM  O    O6   O  0  1  N  N  N  -4.690  -2.868  84.042  -1.915  -2.018  -0.112  O    PUM  19  
PUM  CA   C11  C  0  1  N  N  S  -2.579  -3.905  83.606  -2.410  -0.325  -1.679  CA   PUM  20  
PUM  CB   C12  C  0  1  N  N  N  -3.410  -5.155  83.413  -1.997   1.125  -1.415  CB   PUM  21  
PUM  CG   C13  C  0  1  N  N  N  -3.393  -6.032  84.630  -2.864   2.063  -2.256  CG   PUM  22  
PUM  CD   C14  C  0  1  N  N  N  -2.521  -7.203  84.333  -2.457   3.491  -1.996  CD   PUM  23  
PUM  OE1  O7   O  0  1  N  N  N  -2.875  -8.024  83.488  -1.562   3.733  -1.215  OE1  PUM  24  
PUM  NE2  N4   N  0  1  N  N  N  -1.367  -7.348  84.974  -3.088   4.498  -2.632  NE2  PUM  25  
PUM  N    N5   N  0  1  N  N  N  -1.539  -4.079  84.608  -3.781  -0.536  -1.207  N    PUM  26  
PUM  OAK  O8   O  0  1  N  N  N  -1.875  -3.676  85.805  -4.788  -0.942  -2.115  OAK  PUM  27  
PUM  CAX  C15  C  0  1  N  N  N  -0.288  -4.554  84.406  -4.083  -0.343   0.092  CAX  PUM  28  
PUM  OAE  O9   O  0  1  N  N  N   0.483  -4.660  85.345  -3.220   0.006   0.870  OAE  PUM  29  
PUM  CAN  C16  C  0  1  N  N  N   0.154  -4.875  82.996  -5.493  -0.559   0.578  CAN  PUM  30  
PUM  NAQ  N6   N  0  1  N  N  N   1.611  -4.900  83.039  -5.561  -0.287   2.016  NAQ  PUM  31  
PUM  CAV  C17  C  0  1  N  N  N   2.438  -4.669  82.005  -6.755  -0.419   2.685  CAV  PUM  32  
PUM  NAB  N7   N  0  1  N  N  N   3.778  -4.708  82.119  -7.885  -0.807   2.004  NAB  PUM  33  
PUM  NAA  N8   N  0  1  N  N  N   1.905  -4.388  80.805  -6.816  -0.176   3.964  NAA  PUM  34  
PUM  H1   H1   H  0  1  N  N  N  -1.950  -1.651  77.302   4.647   1.698   3.157  H1   PUM  35  
PUM  H2   H2   H  0  1  N  N  N  -1.990  -1.536  82.255   5.901   1.145  -1.427  H2   PUM  36  
PUM  H4   H4   H  0  1  N  N  N  -3.122   1.482  80.738   4.431  -0.617  -1.710  H4   PUM  37  
PUM  H5   H5   H  0  1  N  N  N  -5.106  -0.338  80.365   4.652  -1.972   0.985  H5   PUM  38  
PUM  H6   H6   H  0  1  N  N  N  -6.408   1.454  80.985   5.792  -3.518  -0.437  H6   PUM  39  
PUM  H7   H7   H  0  1  N  N  N  -4.953  -1.327  82.427   2.737  -3.221   0.662  H7   PUM  40  
PUM  H8   H8   H  0  1  N  N  N  -6.518  -0.375  83.775   4.068  -4.640  -0.761  H8   PUM  41  
PUM  H9   H9   H  0  1  N  N  N  -4.469   1.383  83.635   2.234  -2.049  -2.081  H9   PUM  42  
PUM  H10  H10  H  0  1  N  N  N  -3.260   0.242  85.309   0.454  -3.174  -0.695  H10  PUM  43  
PUM  H11  H11  H  0  1  N  N  N  -4.713  -0.777  85.028   0.698  -1.938   0.563  H11  PUM  44  
PUM  H12  H12  H  0  1  N  N  N  -1.924  -1.416  84.177   0.192  -0.627  -1.886  H12  PUM  45  
PUM  H13  H13  H  0  1  N  N  N  -2.100  -3.670  82.644  -2.359  -0.528  -2.749  H13  PUM  46  
PUM  H14  H14  H  0  1  N  N  N  -4.449  -4.862  83.200  -2.133   1.354  -0.358  H14  PUM  47  
PUM  H15  H15  H  0  1  N  N  N  -3.007  -5.722  82.561  -0.950   1.258  -1.685  H15  PUM  48  
PUM  H16  H16  H  0  1  N  N  N  -2.991  -5.474  85.488  -2.729   1.834  -3.313  H16  PUM  49  
PUM  H17  H17  H  0  1  N  N  N  -4.413  -6.373  84.860  -3.912   1.929  -1.987  H17  PUM  50  
PUM  H18  H18  H  0  1  N  N  N  -0.777  -8.130  84.771  -3.804   4.304  -3.257  H18  PUM  51  
PUM  H19  H19  H  0  1  N  N  N  -1.088  -6.675  85.659  -2.826   5.417  -2.464  H19  PUM  52  
PUM  H20  H20  H  0  1  N  N  N  -1.147  -3.809  86.400  -5.660  -1.056  -1.711  H20  PUM  53  
PUM  H21  H21  H  0  1  N  N  N  -0.196  -4.101  82.298  -6.168   0.113   0.048  H21  PUM  54  
PUM  H22  H22  H  0  1  N  N  N  -0.238  -5.854  82.684  -5.787  -1.592   0.390  H22  PUM  55  
PUM  H23  H23  H  0  1  N  N  N   2.035  -5.109  83.920  -4.764  -0.013   2.496  H23  PUM  56  
PUM  H24  H24  H  0  1  N  N  N   4.199  -4.916  83.002  -7.840  -0.988   1.052  H24  PUM  57  
PUM  H25  H25  H  0  1  N  N  N   4.353  -4.529  81.321  -8.727  -0.900   2.476  H25  PUM  58  
PUM  H26  H26  H  0  1  N  N  N   0.905  -4.385  80.830  -6.019   0.098   4.444  H26  PUM  59  
PUM  H3   H3   H  0  1  N  N  N  -0.819  -3.336  80.992   6.815   2.846  -0.015  H3   PUM  60  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PUM  NAT  CBB  SING  N  N   1  
PUM  NAT  CBA  SING  N  N   2  
PUM  OAH  CBB  DOUB  N  N   3  
PUM  OAG  CBA  DOUB  N  N   4  
PUM  CBB  CAZ  SING  N  N   5  
PUM  CBA  NAS  SING  N  N   6  
PUM  CAZ  CAL  DOUB  N  N   7  
PUM  CAZ  CBG  SING  N  N   8  
PUM  NAS  CAL  SING  N  N   9  
PUM  NAA  CAV  DOUB  N  N  10  
PUM  OAJ  CBD  SING  N  N  11  
PUM  CBD  CBG  SING  N  N  12  
PUM  CBD  CBC  SING  N  N  13  
PUM  CBG  OAU  SING  N  N  14  
PUM  CAV  NAB  SING  N  N  15  
PUM  CAV  NAQ  SING  N  N  16  
PUM  CBC  OAI  SING  N  N  17  
PUM  CBC  CBE  SING  N  N  18  
PUM  OAU  CBE  SING  N  N  19  
PUM  CAN  NAQ  SING  N  N  20  
PUM  CAN  CAX  SING  N  N  21  
PUM  CBE  CAP  SING  N  N  22  
PUM  CB   CA   SING  N  N  23  
PUM  CB   CG   SING  N  N  24  
PUM  OE1  CD   DOUB  N  N  25  
PUM  CA   C    SING  N  N  26  
PUM  CA   N    SING  N  N  27  
PUM  C    O    DOUB  N  N  28  
PUM  C    NAR  SING  N  N  29  
PUM  NAR  CAP  SING  N  N  30  
PUM  CD   CG   SING  N  N  31  
PUM  CD   NE2  SING  N  N  32  
PUM  CAX  N    SING  N  N  33  
PUM  CAX  OAE  DOUB  N  N  34  
PUM  N    OAK  SING  N  N  35  
PUM  NAT  H1   SING  N  N  36  
PUM  CAL  H2   SING  N  N  37  
PUM  CBG  H4   SING  N  N  38  
PUM  CBD  H5   SING  N  N  39  
PUM  OAJ  H6   SING  N  N  40  
PUM  CBC  H7   SING  N  N  41  
PUM  OAI  H8   SING  N  N  42  
PUM  CBE  H9   SING  N  N  43  
PUM  CAP  H10  SING  N  N  44  
PUM  CAP  H11  SING  N  N  45  
PUM  NAR  H12  SING  N  N  46  
PUM  CA   H13  SING  N  N  47  
PUM  CB   H14  SING  N  N  48  
PUM  CB   H15  SING  N  N  49  
PUM  CG   H16  SING  N  N  50  
PUM  CG   H17  SING  N  N  51  
PUM  NE2  H18  SING  N  N  52  
PUM  NE2  H19  SING  N  N  53  
PUM  OAK  H20  SING  N  N  54  
PUM  CAN  H21  SING  N  N  55  
PUM  CAN  H22  SING  N  N  56  
PUM  NAQ  H23  SING  N  N  57  
PUM  NAB  H24  SING  N  N  58  
PUM  NAB  H25  SING  N  N  59  
PUM  NAA  H26  SING  N  N  60  
PUM  NAS  H3   SING  N  N  61  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PUM  SMILES            ACDLabs               12.01  "O=C1C(=CNC(N1)=O)C2OC(C(C2O)O)CNC(=O)C(N(O)C(=O)CN/C(N)=N)CCC(N)=O"  
PUM  InChI             InChI                 1.03   "InChI=1S/C17H26N8O9/c18-9(26)2-1-7(25(33)10(27)5-22-16(19)20)15(31)21-4-8-11(28)12(29)13(34-8)6-3-23-17(32)24-14(6)30/h3,7-8,11-13,28-29,33H,1-2,4-5H2,(H2,18,26)(H,21,31)(H4,19,20,22)(H2,23,24,30,32)/t7-,8+,11+,12+,13-/m0/s1"  
PUM  InChIKey          InChI                 1.03   XDEYHXABZOKKDZ-YFKLLHAASA-N  
PUM  SMILES_CANONICAL  CACTVS                3.385  "NC(=N)NCC(=O)N(O)[C@@H](CCC(N)=O)C(=O)NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)C2=CNC(=O)NC2=O"  
PUM  SMILES            CACTVS                3.385  "NC(=N)NCC(=O)N(O)[CH](CCC(N)=O)C(=O)NC[CH]1O[CH]([CH](O)[CH]1O)C2=CNC(=O)NC2=O"  
PUM  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "[H]/N=C(/N)\NCC(=O)N([C@@H](CCC(=O)N)C(=O)NC[C@@H]1[C@H]([C@H]([C@@H](O1)C2=CNC(=O)NC2=O)O)O)O"  
PUM  SMILES            "OpenEye OEToolkits"  2.0.6  "C1=C(C(=O)NC(=O)N1)C2C(C(C(O2)CNC(=O)C(CCC(=O)N)N(C(=O)CNC(=N)N)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PUM  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1S)-1,4-anhydro-5-[(N-carbamimidoylglycyl-N~2~-hydroxy-L-glutaminyl)amino]-5-deoxy-1-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)-D-ribitol"  
PUM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(2~{S})-~{N}-[[(2~{R},3~{S},4~{R},5~{S})-5-[2,4-bis(oxidanylidene)-1~{H}-pyrimidin-5-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-2-[2-carbamimidamidoethanoyl(oxidanyl)amino]pentanediamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PUM  "Create component"    2017-02-13  RCSB  
PUM  "Other modification"  2017-02-24  RCSB  
PUM  "Initial release"     2017-07-05  RCSB  
PUM  "Modify synonyms"     2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     PUM
_pdbx_chem_comp_synonyms.name        pseudouridimycin
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
